SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene811

Length: 453 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene811
GTTGCAAGTGTACATGAAAAAGTCCACTTCCTCTGCTTTAGTTTATCACTAAAATGGTGCTTTCTAGTTGCTGGAATGGCATGCAAACTGACAGTCACATTTTCTGATTGATTTTACTTGTTCCGTTTTTCATGCAAGCGGAGGTCAAACCTTTGAAGCACTTAAGCGGCCAAGTCTGCCAGATCTGTGGTGATGATGTTGGGCTAACGGCAGATGGAGATCTCTTTGTAGCGTGCAATGTCTGTGCCTTTCCTGTGTGCAGACCTTGCTATGACTACGAGCGCAAAGATGGAAATCAATCCTGTCCTCAATGCAAGACTAGATACAAGATGCATAAAGGTAGTCCTAGGGTGGAAGGCGATGAAGGAGAAGACGGTGCTGATGATGTAGGGAATGAGTATCACTACCCACCACCTGGTAGCAGAAATGAGAAGCAAAAGATTGCAGAGGCAA

Ace file of the UniGene sp_v1.1_unigene811 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA	-	-	3.9937e-43	85%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	66%
Blast2go	cellulose synthase	-	-	1.58347e-43	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.58347e-43	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 967 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 107 - 1096

Fln protein: MQAEVKPLKHLSGQVCQICGDDVGLTADGDLFVACNVCAFPVCRPCYDYERKDGNQSCPQCKTRYKMHKGSPRVEGDEGEDGADDVGNEYHYPPPGSRNEKQKIAEA

Protein Length: 108

Fln nts: GTTGCAAGTGTACATGAAAAAGTCCACTTCCTCTGCTTTAGTTTATCACTAAAATGGTGCTTTCTAGTTGCTGGAATGGCATGCAAACTGACAGTCACATTTTCTGATTGATTTTACTTGTTCCGTTTTTC_-_ATGCAAGCGGAGGTCAAACCTTTGAAGCACTTAAGCGGCCAAGTCTGCCAGATCTGTGGTGATGATGTTGGGCTAACGGCAGATGGAGATCTCTTTGTAGCGTGCAATGTCTGTGCCTTTCCTGTGTGCAGACCTTGCTATGACTACGAGCGCAAAGATGGAAATCAATCCTGTCCTCAATGCAAGACTAGATACAAGATGCATAAAGGTAGTCCTAGGGTGGAAGGCGATGAAGGAGAAGACGGTGCTGATGATGTAGGGAATGAGTATCACTACCCACCACCTGGTAGCAGAAATGAGAAGCAAAAGATTGCAGAGGCAA

Fln Alignment:

sp_v1.1_unigene811___KPLKHLSGQVCQICGDDVGLTADGDLFVACNVCAFPVCRPCYDYERKDGNQSCPQCKTRYKMHKGSPRVXXXXXXXXXXXXXXEYHYPPPGSRNEKQKIAEA
Q4VWW7_____________KPPQHINSHICQICGEDVGLAADGEFFVACNECAFPVCRPCYEYEWKDGNQSCPQCKTRYKWHKGSPQVDGDKEDECADDLDHDFN-STQGNRNEKQQIAEA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
93		25		75	0.996473
215	81		18		0.999994
216	18		9		0.999994
314		90	10		0.90298
316	10		90		0.90298
317		90		10	0.90298
320			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain