SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene800

Length: 3172 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene800
ATGGGGGGGACAGAAACAGCGAATAGCAATCTCTAGAGCTATAGTTAAAAATCCAGCGATACTTCTCCTGGACGAGGCCACCAGTGCCTTGGATTCAGAATCTGAAAAAAGTGTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTTGGGATGTCGGGAGCAATATTTGCAGGAGGGCAAATACCCTTGTTTGCCCTGGGAGTCACTCAAGGCATGGTGGCCCTTTACAGTGCGGATTACGGTTACACCAAAAGTGAAATACGCAAAATCTGCTTGCTTTTTTGCACCGCTGCTGTGCTCACAGTCTTTGCACATGTGGTGGAACATGTCAACTTCGCAACAATGGGTGAACGTCTTACATTACGTGTGAGGGAGATGATGTTCGCAGCAATCCTGCGAAATGAAGTGGGGTGGTTTGATGATAACAGCAACAACAGTGGCCTGGTGTCTTCTCGGTTGGCGTCGGACGCAACATTAGTGAGAGGTTTGGTGGTAGACCGTGGGTCCATTCTACTGCAAAACTTGTCGCTCATTGTGACTGCAGTTATAATTGCATTCATCGAGCAATGGCGTATCACCCTGGTTATATTGGCCACTTACCCCTTCCTCGTCATTTCCCAGATGTGTGAGAGGTTCTTCATGACAGGATATGGGGGAAACCTGAGCAAAGCTTATCTAAAAGCCAATATGATGGCCACCGAAGGGGTGAGCAATATCAGAACAGTGGCGGCCTTTTGTGCTGAAGAGAAACTCATCGACATGTTCAGCAGAGAATTAGAGGAGCCACGAAAAAAATCTTTTATTCGTGGGCAAATAGCAGGATTCTTCTACGGAATTTCACAGTTCTCCATGTTCAGCTCCTATGGTTTGGCCCTGTGGTATGCCTCCACTCTCATCAAGAACTACGAAGCATCATTTGGGTCCGTGATGAAAACGTTCATGGTTCTCATAGTCACAGCCCTGGGCATGGCAGAGACCCTTGCAGTCTGCCCTGATTTAATCAAGGGCACAGATGCTGTGAGCTCTGTATTTGAAATTGTGGACAGGAAAACAGAAATTCCTCCAGACGACCCAAATGGCGAAGTTCTGACCCATGTACAAGGGGTGATCCAGTTGAAACATGTAGATTTCAGCTACCCTGCAAGGCCGGATGTGAAAATTTTTGAGGACTTCAACCTTGTAGTAAAATCTGGTCGATCTGTGGCACTGGTTGGTTCCAGTGGCTCGGGAAAAAGTTCAATTCTTGCTCTGATATTGAGATTCTACGATCCAACTGCAGGCAAGGTGATGGTCGATGGCATAGATATCAAGAAATTGAAGGTGAGGTCATTGCGTAAACACATAGGTCTAGTTCAGCAGGAACCTGCTCTGTTCGCCACTACCATATTCGATAATATCATCTATGGAAGAGATGGAGCCACTGAAGCTGAGGTTATTGAAGCTGCTAAATTGGCCAATGCCCACAACTTTATCAGTAGCCTGCCAGATGGGTATCGGACCGAGGTGGGTGAGAGGGGAGTTCAGTTGTCAGGGGGGCAGAAACAGAGAGTTGCCATTGCTAGAGCAGTGCTCAAAGATCCTGCTATTCTACTTTTAGATGAGGCCACCAGTGCCCTTGATGCTGAATCTGAGAATGTTGTGCAACAGGCATTGAACCAGCTGATGAAGAACAGGACTACTGTTATGGTAGCCCATCGTCTGTCTACTGTTCAGAATGCTGATGTCATTGCTGTTTTGCAGGATGGTAAAATTGTTGAGCAAGGCTCTCATTCCAGTCTTCTCAACAAGGATGGTGCCTATTCAAAGCTTGTCAGTCTTCAACAACATCAATGACTTCTACACAGGGTTAGGCTTCCAGTCTATATTTCATCTTGGGTTCAGTATGGTGCCTATTCAGAGCTTGTCAGTCCTCAACAACATCAATGATTTCTACATAGGGTTAGCTTTCCAATCTAGTTTTCATCTTGGGTTTCATAAAACATAGTTGGATGGGTTAAGCTTGAATTTAACAGTGATACATATTGTGTAGATGTTCTCTATACTATGATCACGTGAAAAAAATATTGGTCAGATAATGTGAAAACAACTGATACTCTGTTGTCTTCGGTGATTGGAATAAAAACACACATTGGATTCTCTGTCTGGGTATTAAGCAGTAAACAGATTGTAAAGACATGGAATCTCTTGATGGGCCGCACAGCAATAAGGTTGCAGGATAGGAGACTTGGTAGATTGCCAGTAGAGAATTAAACATTGATTCATGAGGTGTCATGCACGAGTGGCCGTGCTTTTGTATTTCAATAAATATGCAGTTTATCACTTTCTGGATTGCTGGTTGCATTTGATAAAAAGCTGAAAGTGCAAATAGCTCTGAATGAAGCTTCGATTAGTCCATGGAAACGTTTACAGATATGTAAGCTGATCTGAAATATGTAGCTGTGAATGAAATGTGCAGAGGCTTTGCAGAAAGTTGTTACATTATACGAAGAATTTAACTCAATTTAGATGAAATGAATATTGATTTCAAATATTAGATATTTGTGAGATGGTTTAATATTTAAATATTTGGTTGAATGGACACATTCAATTGTTGGTTGTGAAATATCAAATGTCTATTAAATAAGAGCACAGGGCCTTTGGTTGCATCTGTATGTAATGAAAGCCGAGGTATAAAATGTAGGATCTCTGCATGGGCTTTGGTTGTATCTGTATGTAATGAAAGCAGAGGTATAAAATGTAGGATCTCTGCAT

Ace file of the UniGene sp_v1.1_unigene800 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug/pheromone exporter, MDR family, ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9GZA0_POPTR	-	-	64%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	43%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	77%
Blast2go	ABC transporter-like	IPR003439	-	77%
Blast2go	AAA+ ATPase domain	IPR003593	-	77%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	77%
Blast2go	ABC transporter, conserved site	IPR017871	-	77%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 751 - 1316

Fln protein: WGGQKQRIAISRAIVKNPAILLLDEATSALDSESEKSVQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGSALSRQKSAVVSRGGGGSISQRGGGGSISRTFSFAASDKESSLGAFSRPFGSETNEIAKTERVPFSRLVKMAAPDWMRAVLGMSGAIFAGGQIPLFALGVTQGMVALYSADYGYTKSEIRKICLLFCTAAVLTVFAHVVEHVNFATMGERLTLRVREMMFAAILRNEVGWFDDNSNNSGLVSSRLASDATLVRGLVVDRGSILLQNLSLIVTAVIIAFIEQWRITLVILATYPFLVISQMCERFFMTGYGGNLSKAYLKANMMATEGVSNIRTVAAFCAEEKLIDMFSRELEEPRKKSFIRGQIAGFFYGISQFSMFSSYGLALWYASTLIKNYEASFGSVMKTFMVLIVTALGMAETLAVCPDLIKGTDAVSSVFEIVDRKTEIPPDDPNGEVLTHVQGVIQLKHVDFSYPARPDVKIFEDFNLVVKSGRSVALVGSSGSGKSSILALILRFYDPTAGKVMVDGIDIKKLKVRSLRKHIGLVQQEPALFATTIFDNIIYGRDGATEAEVIEAAKLANAHNFISSLPDGYRTEVGERGVQLSGGQKQRVAIARAVLKDPAILLLDEATSALDAESENVVQQALNQLMKNRTTVMVAHRLSTVQNADVIAVLQDGKIVEQGSHSSLLNKDGAYSKLVSLQQHQ*

Protein Length: 752

Fln nts: ATGGGGGGGACAGAAACAGCGAATAGCAATCTCTAGAGCTATAGTTAAAAATCCAGCGATACTTCTCCTGGACGAGGCCACCAGTGCCTTGGATTCAGAATCTGAAAAAAGTGTGCAAGTAGCTCTCGATCGTGTCATGGTTGGTCGGACAACCGTAGTAGTTGCTCATCGCTTATCCACTATAATAAACGCAGACATTATAGCTGTAATTCAAAATGGTAAAATTGTGGAAAGTGGTGATCATAAAACGCTGATGTCCAAAGAGGGAGGAGCATATGCAAGCCTTGTCAAGTTGCAGGAATCGAGTAAAGAGGTTGCAGAGGGTTCGGCCCTCTCTCGTCAGAAAAGTGCGGTCGTTTCACGAGGTGGTGGTGGCTCTATCTCGCAAAGAGGTGGTGGTGGCTCTATCTCGCGAACATTCAGTTTCGCAGCATCAGACAAGGAGTCATCATTGGGAGCATTTTCCAGGCCTTTTGGTTCAGAGACGAACGAGATTGCCAAAACTGAGAGAGTTCCTTTTAGTCGATTGGTCAAAATGGCTGCCCCAGACTGGATGCGCGCTGTCCTTGGGATGTCGGGAGCAATATTTGCAGGAGGGCAAATACCCTTGTTTGCCCTGGGAGTCACTCAAGGCATGGTGGCCCTTTACAGTGCGGATTACGGTTACACCAAAAGTGAAATACGCAAAATCTGCTTGCTTTTTTGCACCGCTGCTGTGCTCACAGTCTTTGCACATGTGGTGGAACATGTCAACTTCGCAACAATGGGTGAACGTCTTACATTACGTGTGAGGGAGATGATGTTCGCAGCAATCCTGCGAAATGAAGTGGGGTGGTTTGATGATAACAGCAACAACAGTGGCCTGGTGTCTTCTCGGTTGGCGTCGGACGCAACATTAGTGAGAGGTTTGGTGGTAGACCGTGGGTCCATTCTACTGCAAAACTTGTCGCTCATTGTGACTGCAGTTATAATTGCATTCATCGAGCAATGGCGTATCACCCTGGTTATATTGGCCACTTACCCCTTCCTCGTCATTTCCCAGATGTGTGAGAGGTTCTTCATGACAGGATATGGGGGAAACCTGAGCAAAGCTTATCTAAAAGCCAATATGATGGCCACCGAAGGGGTGAGCAATATCAGAACAGTGGCGGCCTTTTGTGCTGAAGAGAAACTCATCGACATGTTCAGCAGAGAATTAGAGGAGCCACGAAAAAAATCTTTTATTCGTGGGCAAATAGCAGGATTCTTCTACGGAATTTCACAGTTCTCCATGTTCAGCTCCTATGGTTTGGCCCTGTGGTATGCCTCCACTCTCATCAAGAACTACGAAGCATCATTTGGGTCCGTGATGAAAACGTTCATGGTTCTCATAGTCACAGCCCTGGGCATGGCAGAGACCCTTGCAGTCTGCCCTGATTTAATCAAGGGCACAGATGCTGTGAGCTCTGTATTTGAAATTGTGGACAGGAAAACAGAAATTCCTCCAGACGACCCAAATGGCGAAGTTCTGACCCATGTACAAGGGGTGATCCAGTTGAAACATGTAGATTTCAGCTACCCTGCAAGGCCGGATGTGAAAATTTTTGAGGACTTCAACCTTGTAGTAAAATCTGGTCGATCTGTGGCACTGGTTGGTTCCAGTGGCTCGGGAAAAAGTTCAATTCTTGCTCTGATATTGAGATTCTACGATCCAACTGCAGGCAAGGTGATGGTCGATGGCATAGATATCAAGAAATTGAAGGTGAGGTCATTGCGTAAACACATAGGTCTAGTTCAGCAGGAACCTGCTCTGTTCGCCACTACCATATTCGATAATATCATCTATGGAAGAGATGGAGCCACTGAAGCTGAGGTTATTGAAGCTGCTAAATTGGCCAATGCCCACAACTTTATCAGTAGCCTGCCAGATGGGTATCGGACCGAGGTGGGTGAGAGGGGAGTTCAGTTGTCAGGGGGGCAGAAACAGAGAGTTGCCATTGCTAGAGCAGTGCTCAAAGATCCTGCTATTCTACTTTTAGATGAGGCCACCAGTGCCCTTGATGCTGAATCTGAGAATGTTGTGCAACAGGCATTGAACCAGCTGATGAAGAACAGGACTACTGTTATGGTAGCCCATCGTCTGTCTACTGTTCAGAATGCTGATGTCATTGCTGTTTTGCAGGATGGTAAAATTGTTGAGCAAGGCTCTCATTCCAGTCTTCTCAACAAGGATGGTGCCTATTCAAAGCTTGTCAGTCTTCAACAACATCAATGA___CTTCTACACAGGGTTAGGCTTCCAGTCTATATTTCATCTTGGGTTCAGTATGGTGCCTATTCAGAGCTTGTCAGTCCTCAACAACATCAATGATTTCTACATAGGGTTAGCTTTCCAATCTAGTTTTCATCTTGGGTTTCATAAAACATAGTTGGATGGGTTAAGCTTGAATTTAACAGTGATACATATTGTGTAGATGTTCTCTATACTATGATCACGTGAAAAAAATATTGGTCAGATAATGTGAAAACAACTGATACTCTGTTGTCTTCGGTGATTGGAATAAAAACACACATTGGATTCTCTGTCTGGGTATTAAGCAGTAAACAGATTGTAAAGACATGGAATCTCTTGATGGGCCGCACAGCAATAAGGTTGCAGGATAGGAGACTTGGTAGATTGCCAGTAGAGAATTAAACATTGATTCATGAGGTGTCATGCACGAGTGGCCGTGCTTTTGTATTTCAATAAATATGCAGTTTATCACTTTCTGGATTGCTGGTTGCATTTGATAAAAAGCTGAAAGTGCAAATAGCTCTGAATGAAGCTTCGATTAGTCCATGGAAACGTTTACAGATATGTAAGCTGATCTGAAATATGTAGCTGTGAATGAAATGTGCAGAGGCTTTGCAGAAAGTTGTTACATTATACGAAGAATTTAACTCAATTTAGATGAAATGAATATTGATTTCAAATATTAGATATTTGTGAGATGGTTTAATATTTAAATATTTGGTTGAATGGACACATTCAATTGTTGGTTGTGAAATATCAAATGTCTATTAAATAAGAGCACAGGGCCTTTGGTTGCATCTGTATGTAATGAAAGCCGAGGTATAAAATGTAGGATCTCTGCATGGGCTTTGGTTGTATCTGTATGTAATGAAAGCAGAGGTATAAAATGTAGGATCTCTGCAT

Fln Alignment:

sp_v1.1_unigene800___GGQKQRIAISRAIVKNPAILLLDEATSALDSESEKSVQVALDRVMVGRTTVVVAHRLSTIINADIIAVIQNGKIVESGDHKTLMSKEGGAYASLVKLQESSKEVAEGSA-----------------LSRQKSAVVXXXXXXXXXXXXXXXXXXRTFSFAASDKESSLGAFSRPFGSETNEIAK---------------------TERVPFSRLVKMAAPDWMRAVLGMSGAIFAGGQIPLFALGVTQGMVALYSADYGYTKSEIRKICLLFCTAAVLTVFAHVVEHVNFATMGERLTLRVREMMFAAILRNEVGWFDDNSNNSGLVSSRLASDATLVRGLVVDRGSILLQNLSLIVTAVIIAFIEQWRITLVILATYPFLVISQMCERFFMTGYGGNLSKAYLKANMMATEGVSNIRTVAAFCAEEKLIDMFSRELEEPRKKSFIRGQIAGFFYGISQFSMFSSYGLALWYASTLIKNYEASFGSVMKTFMVLIVTALGMAETLAVCPDLIKGTDAVSSVFEIVDRKTEIPPDDPNGEVLTHVQGVIQLKHVDFSYPARPDVKIFEDFNLVVKSGRSVALVGSSGSGKSSILALILRFYDPTAGKVMVDGIDIKKLKVRSLRKHIGLVQQEPALFATTIFDNIIYGRDGA-TEAEVIEAAKLANAHNFISSLPDGYRTEVGERGVQLSGGQKQRVAIARAVLKDPAILLLDEATSALDAESENVVQQALNQLMKNRTTVMVAHRLSTVQNADVIAVLQDGKIVEQGSHSSLLNK-DGAYS
E6Y0T0_____________GGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDSKDPDELEIHQDDSKVLGRVSSQRSSFRRSISSGSSGIGGSRRSYSFSYAFPGTVGLQETGGMEEISQSKGNKRRKGLMSYFRSNTQKDVEGGQSDAEKDVSILRLASLNKPEIPVFILGSIAAAMNGMIFPVFGLLLSSVIKVFYEPPHELRK-DAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNENSSGAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRVKVNRSTIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKKRNGAYA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1896			11	88	0.923564
1899	87	12			0.992554
2050		33		66	0.997452
2051		33		66	0.997452
2052	33	66			0.997452
2053			66	33	0.997452
2309	88			11	0.923564
2450		16	83		0.994512
2451		16		83	0.994512
2452		16	83		0.994512
2454			83	16	0.994512
2536	20	80			0.995493
2574		20		80	0.995493
2976	90	10			0.90298
2977	90	10			0.90298
2978		10		90	0.90298
2979	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain