SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene796

Length: 1357 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene796

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	prephenate dehydrogenase, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	arogenate dehydrogenase isoform 2	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Prephenate dehydrogenase	IPR003099	-	81%
Blast2go	Arogenate/prephenate dehydrogenase	IPR012070	-	81%
Blast2go	NAD(P)-binding domain	IPR016040	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN5

Fln msg:

Fln protein: MSEFQCMATSVKPSSICFQSSQPCFGVKQLFMPVRIWNSKPTSLFSVRKKQNREHTSVLRQLRIKALDAAQPFDYEFKKNEDLENNFVLKIGIVGFGNFGQFLAKTLVKQGHTVLAHSRTDHGEIARKMGVSFFKDADDFCEEHPEVILLCSSIIATESVLRSFPTQRLKRNTLFADVLSVKEFPRNLFLQILPPEFDILCTHPMFGPESGKAGWSGLPFVYEKVRVGKGARAERCYRFLNIFAKEGCRMVEMSCVEHDRHAAESQFITHTVGRMLAKLNLESTPINTKGYETLLRIVENTSGDSFDLYYGLFMYNKNATEQLERLERALDALKKQLVGQLHQILRKQLFEGNSSVQSSQNISALADMQNSHPSGNSSGEQKIKKLTDVIKEVK*

Protein Length: 396

Fln nts: CTAAGGGCTGGATCTGTCTAAATTACATCATTTTATTCCAAGCTGCAGTATAATCACCAAAAGCTTGGAG_-_ATGTCTGAGTTTCAATGTATGGCTACTTCAGTTAAACCTTCATCTATTTGCTTTCAATCTTCCCAGCCTTGTTTTGGTGTCAAACAGCTTTTCATGCCAGTACGGATATGGAACAGTAAACCAACCTCTCTGTTTTCTGTTAGGAAGAAACAAAATAGAGAGCATACTTCCGTTCTTAGACAACTGAGGATTAAAGCGTTGGATGCCGCTCAGCCATTTGATTATGAATTCAAGAAAAATGAGGACTTGGAGAATAATTTTGTGTTAAAGATAGGTATAGTTGGATTTGGTAATTTTGGTCAATTTCTTGCAAAAACCCTTGTAAAGCAAGGCCACACAGTATTGGCTCATTCTCGAACAGATCATGGGGAGATTGCTAGAAAGATGGGAGTTTCTTTCTTCAAGGATGCAGATGATTTTTGTGAAGAACATCCTGAAGTTATATTGCTATGTTCATCTATTATAGCAACAGAGTCTGTGCTGAGGTCATTTCCAACTCAAAGATTGAAGAGAAACACATTATTTGCAGATGTACTTTCTGTGAAAGAGTTTCCACGCAATCTATTTTTACAGATATTGCCTCCAGAATTTGATATATTGTGCACTCATCCTATGTTTGGGCCTGAGAGCGGGAAAGCTGGGTGGAGTGGCCTTCCTTTTGTTTATGAAAAGGTTAGGGTTGGCAAAGGAGCAAGAGCAGAACGTTGTTATAGGTTTTTGAATATATTTGCAAAAGAAGGTTGCAGGATGGTTGAGATGTCATGTGTTGAACACGATCGCCATGCTGCTGAAAGTCAATTTATTACGCATACTGTTGGCAGGATGTTAGCAAAGTTGAACTTGGAATCTACTCCAATTAATACTAAAGGCTATGAAACATTGCTCCGAATTGTTGAGAACACTTCCGGGGACAGTTTTGATCTTTATTATGGTTTATTTATGTACAATAAAAATGCAACAGAGCAGTTGGAGAGACTGGAGAGGGCTCTTGATGCTCTAAAGAAACAGCTTGTAGGGCAGTTGCACCAGATACTTAGAAAACAGTTATTTGAAGGAAATAGCTCTGTGCAATCTTCTCAGAATATTTCAGCATTAGCTGACATGCAAAATTCTCACCCTTCAGGCAACTCTTCTGGCGAGCAGAAAATAAAGAAGCTAACTGATGTCATTAAGGAAGTTAAGTAG___TAATTTCGAAGTTATTTCTAGCTCATCCCAATTGGGAGTTTTTGAATTTACAGTGCTTTTAGAGCTTTATTTGGCTTATGTTCTTTGTATTAAATTTTTATT

Fln Alignment:

sp_v1.1_unigene796___MSEFQCMATSVKPSSICFQSSQPCFGVKQLFMPVRIWNSKPTSLFSVRKKQNREHTSVLRQLRIKALDAAQPFDYEFKKNEDLENNFVLKIGIVGFGNFGQFLAKTLVKQGHTVLAHSRTDHGEIARKMGVSFFKDADDFCEEHPEVILLCSSIIATESVLRSFPTQRLKRNTLFADVLSVKEFPRNLFLQILPPEFDILCTHPMFGPESGKAGWSGLPFVYEKVRVGKGARAERCYRFLNIFAKEGCRMVEMSCVEHDRHAAESQFITHTVGRMLAKLNLESTPINTKGYETLLRIVENTSGDSFDLYYGLFMYNKNATEQLERLERALDALKKQLVGQLHQILRKQLFEGNSSVQSSQNISALADMQNSHPSGNSSGEQKIKKLTDVIKEVK
A9NUN5_____________MSEFQCMATSVKPSSIFFQSAQPCFGVKRPFIPTRIWNSRSTFPFSVRKKQNRERSFVLRHLKIKALDAAQPFDYEFKKSEVLEKNSLLKIGIVGFGNFGQFLAKTLVKQGHTVLAHSRTDHGEVARKIGVSFFKDADDFCEEHPEVILLCSSIIATESVLRSFPTQRLKRNTLFADVLSVKEFPRNLFSQLLPPEFDILCTHPMFGPESGKAGWSGLPFVYEKVRVGKGARAERCYRFLNIFAQEGCRMVEMSCTEHDRHAAESQFITHTVGRMLAKLNLESTPINTKGYETLLRIVDNTCGDSFDLYYGLFMYNNNATEQLERLEMAFDALKKQLMGQLHQILRKQLFEGSSSAESSQQISALTDTQNSHPSGNSSGKQKIKELSDVVKEVK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
463		33		66	1.0
464			33	66	1.0
468			33	66	1.0
470		66	33		1.0
471	33			66	1.0
472		33		66	1.0
474	66			33	1.0
475	66			33	1.0
478	66	33			1.0
485	66	33			1.0
487		33	66		1.0
603		16		83	0.994512
606	83	16			0.994512
607		83	16		0.994512
609			16	83	0.994512
610	16			83	0.994512
612		16		83	0.994512
613			83	16	0.994512
615		33	66		1.0
616	80		20		0.995493
617	80	20			0.995493
618	80			20	0.995493
620	80			20	0.995493
621		20	80		0.995493
622	20			80	0.995493
623		20		80	0.995493
714	20		80		0.995493
718	80		20		0.995493
744			75	25	0.996473
746			25	75	0.996473
747			25	75	0.996473
846		80		20	0.995493
1053	38		61		1.0
1060		15		84	1.0
1097	92	7			0.990109
1334	33			66	0.997452
1335		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain