SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene793

Length: 2801 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene793
CGTGTGACCTTGGCTGTCACTTTATCATGGGAAAAATGGTCCTCCTTCTCACAAAACAGATACTTGGAAGAGGTTGAGAGGTTCTCCACTCCAGGCTCAGTTATTCAGAAGAAAGCTTATTTCGAAGCGCATTTCAGAAAAATAGCAGCTCGAAAGGCTTTAGAACAGCAGGCTCAGCTGGAAGCCCATGCAGAGACTGAAAATGAAGTCCATTCAGAGACTGAAAATGAAATCCATTCAGAGATTGAGAATGAAGTCCATTCAGAGACAGATAATGATGTTCTTTTTAGTGAAGGTCACAGTCATGAAGACTCAAGGGTTCTGCAAGATGCTGCTGAACCGAATGGTTTGGAAACTGAAGAGAATCCTTATACGCAGTCAATAGAATATGACAATACACCTCACAATTCAGATACAGAGGAAGGGACTGTCAGCATGTATATAGGAGAAACAGAGGAAAGCCAACATTTACCTTCGATGTTGGATAATGTTCAGCAAGATGAGATGGCTACAGAGGTCATTTCTTCTAGCAACAAGATGATTGAAGAGAATGGAAAACAGCACTGTACACTTGAAAACAACGCAGATTTAGAAGATTTGGATCTGGGAGAACTTGAAAAACCAGTGCCATTCAAACAAGAACTAGAACATGGGTATAGCCCTAAAGAACCACAGGCTGTGGAAACAAGCATGGAAGAAGCAGAGGAGGAAGTGACATCTAACCATGCCCTATCAGATTCTCTAAAGCAAGATCAAAAGAGAAAACCTAGTCGTAAGGATATTGCTTCTTCAAAAGAGAAAATAGCTCAAGCAAATCGCAGCAAATCAGCAATTTCAACAAAATCAGTATCAAATGCTACATCTAGGGCATCAAAGCCTTTGGTTTCTTCTGAGCCTAACAAACCTGCCAAGGGGCTTCTGAAGGCTTCAAGAAAATTGGAGAATGGTCTCGGAATGAGGAAGGAGGCGAGTAGTGGAGAGACAGCCAAGAGTAAAACCTCTCTTTCTATGTCTTTAAACAAGTCAGTGAGTCTAGTAGCAGACAAAGGAACTTCCACTAGACAGAGCTCTGCAAACAAGAAACAACCTTCAAAACCTCTTCGAAATGGCTCAACAGCGTTGATTGCTTCAAAAGCACAGGTTTCTATGAATGGCGTGCCAGAGACTGCTGAGTTGAGGGGAGTTCATAAAGAGAATATTAGGCATCATAAAGAGAGTACGAAAAAGCCAACGAAGCAAATTGAGAACAAACACTCTGAATCAAAAATGGAAGGAGATACATACACTTCAACTTCCGCAGGGTCCCGCAGATCTATCAGTGAAAGTAGGTTAGAGAACAAGGCAACGAGAGCAACATTCAGCTTTAAAAGTGACGAAAGAGCAGAGAAGAGAAAAGAGTTCTATATGAAATTGGAAGAAAAGATGAATGCCAAGGAAGCCGAGATGAATCAGATTCAAGCAAAGACACAGGAAGAAATGGAGTTTGAAATCAAGCAATTGCGTAAGAGCCTTAATTTTAAAGCCACACCTATGCCTACCTTTTATCAGGAAGGAGTACCGCCAAAAACTGAGTCAAAAAAGATTCCAGCACCAAAGATTGGAAAGAAGAGTTCTAATTCTGGGGCAGATTCGGACAGTAGCTCTGCACGAACCCATAAGGTTTCTGGGCCTGTGATCAAGAACAGTAGTTTAACAGAGAAGCATGCCAACTTCAGAGAGAAACATGTGCAGGTTCCAGTGGCTAGTATTAACAACCCTCCTAGAAAGGCACAAAAGGAGGCAGGCTCTACAAATATATCAACTATAAAGCCCATAAAATCGAAGCATTCAAGTAATGCAAGCTCTAAAACAGAAACCTTAAACCCTGCTAGAGTCGAGAACTCTTCAACTAAACCTGTTTGTAATGAATTGGAAGTAACAGTATCCAATACCGTGGAAAATCCATCTGCAGATGGAGAAAGTTGTGGGCAAAGTGCCGATATCGCTTGTGATAAAATATCAGCAGTTCATATTCATAATGACAGCCAAATGGGTGCTGGGCAGCAGGATTTGAAAGACGGAGTTACAGCTAACAGTGAAATCACCGAAGATAAGGTTGAACCAGAGATCATTGCTAATGGTGAAGATAAGGTGCCAGTACAAAAGACAGACAATGCCAAAGAAAAGGTTGGGATTAAGAACAAAGACATTAGCAGCATGAGTTATGGTCCTGCTTCCAGGGGTAAACCAAGATCACAGCGACATGTTTCTACATCTAGCAGCAATCAAGAGTACTCTAAAAGCAAGATCGTTAAAACCTCCAAACGTGAACTGCAAAAGATTGCAACACCTAGAGAAAGTGAAAAGGATGAAGATGCACCAAATACCTCTGGGAAACGCGGTGTTAAAAGCAATCCGGGACTGTCTTGCTTAGTTACAGACATAGCTGTATCCTAATAGATTAGTCAACCTATTATTGTCAGGATGAGAGGCAATGTTTATCAGAATTGAGGTATATTTGTAGTCTATGGCCTGAAGCTAATGATTGCAGTCAGGCGGGTGAATCATTTATAAATTATCTTTGGCTGTGTAAGGTCAGAAAGGTTCAAATTCATCTCCAGCTTTGAAGGCCTGATGACGACGCACACACACTGGACCAGTATTCTGCACTAATGAACTTGTGCTCAAGAAGCTTTCTTAATTCTTATAAACATGTGTATGGTATAGGATTTGTATAATTTAATTAAGCCCTTGGTAGCAAGTTTTACATTCTCATGAACTGCAACATTATGTTTTTGTTTTGCATGGGAGGCTGCCCAGCG

Ace file of the UniGene sp_v1.1_unigene793

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPX2 multi-domain protein	-	-	8.0e-23	70%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	34%
Blast2go	lymphoid organ expressed yellow head virus receptor protein	-	-	1.119e-30	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xklp2 targeting protein	IPR009675	-	1.119e-30	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7MA60

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 667 - 437

Fln protein: MYIGETEESQHLPSMLDNVQQDEMATEVISSSNKMIEENGKQHCTLENNADLEDLDLGELEKPVPFKQELEHGYSPKEPQAVETSMEEAEEEVTSNHALSDSLKQDQKRKPSRKDIASSKEKIAQANRSKSAISTKSVSNATSRASKPLVSSEPNKPAKGLLKASRKLENGLGMRKEASSGETAKSKTSLSMSLNKSVSLVADKGTSTRQSSANKKQPSKPLRNGSTALIASKAQVSMNGVPETAELRGVHKENIRHHKESTKKPTKQIENKHSESKMEGDTYTSTSAGSRRSISESRLENKATRATFSFKSDERAEKRKEFYMKLEEKMNAKEAEMNQIQAKTQEEMEFEIKQLRKSLNFKATPMPTFYQEGVPPKTESKKIPAPKIGKKSSNSGADSDSSSARTHKVSGPVIKNSSLTEKHANFREKHVQVPVASINNPPRKAQKEAGSTNISTIKPIKSKHSSNASSKTETLNPARVENSSTKPVCNELEVTVSNTVENPSADGESCGQSADIACDKISAVHIHNDSQMGAGQQDLKDGVTANSEITEDKVEPEIIANGEDKVPVQKTDNAKEKVGIKNKDISSMSYGPASRGKPRSQRHVSTSSSNQEYSKSKIVKTSKRELQKIATPRESEKDEDAPNTSGKRGVKSNPGLSCLVTDIAVS*

Protein Length: 668

Fln nts: CGTGTGACCTTGGCTGTCACTTTATCATGGGAAAAATGGTCCTCCTTCTCACAAAACAGATACTTGGAAGAGGTTGAGAGGTTCTCCACTCCAGGCTCAGTTATTCAGAAGAAAGCTTATTTCGAAGCGCATTTCAGAAAAATAGCAGCTCGAAAGGCTTTAGAACAGCAGGCTCAGCTGGAAGCCCATGCAGAGACTGAAAATGAAGTCCATTCAGAGACTGAAAATGAAATCCATTCAGAGATTGAGAATGAAGTCCATTCAGAGACAGATAATGATGTTCTTTTTAGTGAAGGTCACAGTCATGAAGACTCAAGGGTTCTGCAAGATGCTGCTGAACCGAATGGTTTGGAAACTGAAGAGAATCCTTATACGCAGTCAATAGAATATGACAATACACCTCACAATTCAGATACAGAGGAAGGGACTGTCAGC_-_ATGTATATAGGAGAAACAGAGGAAAGCCAACATTTACCTTCGATGTTGGATAATGTTCAGCAAGATGAGATGGCTACAGAGGTCATTTCTTCTAGCAACAAGATGATTGAAGAGAATGGAAAACAGCACTGTACACTTGAAAACAACGCAGATTTAGAAGATTTGGATCTGGGAGAACTTGAAAAACCAGTGCCATTCAAACAAGAACTAGAACATGGGTATAGCCCTAAAGAACCACAGGCTGTGGAAACAAGCATGGAAGAAGCAGAGGAGGAAGTGACATCTAACCATGCCCTATCAGATTCTCTAAAGCAAGATCAAAAGAGAAAACCTAGTCGTAAGGATATTGCTTCTTCAAAAGAGAAAATAGCTCAAGCAAATCGCAGCAAATCAGCAATTTCAACAAAATCAGTATCAAATGCTACATCTAGGGCATCAAAGCCTTTGGTTTCTTCTGAGCCTAACAAACCTGCCAAGGGGCTTCTGAAGGCTTCAAGAAAATTGGAGAATGGTCTCGGAATGAGGAAGGAGGCGAGTAGTGGAGAGACAGCCAAGAGTAAAACCTCTCTTTCTATGTCTTTAAACAAGTCAGTGAGTCTAGTAGCAGACAAAGGAACTTCCACTAGACAGAGCTCTGCAAACAAGAAACAACCTTCAAAACCTCTTCGAAATGGCTCAACAGCGTTGATTGCTTCAAAAGCACAGGTTTCTATGAATGGCGTGCCAGAGACTGCTGAGTTGAGGGGAGTTCATAAAGAGAATATTAGGCATCATAAAGAGAGTACGAAAAAGCCAACGAAGCAAATTGAGAACAAACACTCTGAATCAAAAATGGAAGGAGATACATACACTTCAACTTCCGCAGGGTCCCGCAGATCTATCAGTGAAAGTAGGTTAGAGAACAAGGCAACGAGAGCAACATTCAGCTTTAAAAGTGACGAAAGAGCAGAGAAGAGAAAAGAGTTCTATATGAAATTGGAAGAAAAGATGAATGCCAAGGAAGCCGAGATGAATCAGATTCAAGCAAAGACACAGGAAGAAATGGAGTTTGAAATCAAGCAATTGCGTAAGAGCCTTAATTTTAAAGCCACACCTATGCCTACCTTTTATCAGGAAGGAGTACCGCCAAAAACTGAGTCAAAAAAGATTCCAGCACCAAAGATTGGAAAGAAGAGTTCTAATTCTGGGGCAGATTCGGACAGTAGCTCTGCACGAACCCATAAGGTTTCTGGGCCTGTGATCAAGAACAGTAGTTTAACAGAGAAGCATGCCAACTTCAGAGAGAAACATGTGCAGGTTCCAGTGGCTAGTATTAACAACCCTCCTAGAAAGGCACAAAAGGAGGCAGGCTCTACAAATATATCAACTATAAAGCCCATAAAATCGAAGCATTCAAGTAATGCAAGCTCTAAAACAGAAACCTTAAACCCTGCTAGAGTCGAGAACTCTTCAACTAAACCTGTTTGTAATGAATTGGAAGTAACAGTATCCAATACCGTGGAAAATCCATCTGCAGATGGAGAAAGTTGTGGGCAAAGTGCCGATATCGCTTGTGATAAAATATCAGCAGTTCATATTCATAATGACAGCCAAATGGGTGCTGGGCAGCAGGATTTGAAAGACGGAGTTACAGCTAACAGTGAAATCACCGAAGATAAGGTTGAACCAGAGATCATTGCTAATGGTGAAGATAAGGTGCCAGTACAAAAGACAGACAATGCCAAAGAAAAGGTTGGGATTAAGAACAAAGACATTAGCAGCATGAGTTATGGTCCTGCTTCCAGGGGTAAACCAAGATCACAGCGACATGTTTCTACATCTAGCAGCAATCAAGAGTACTCTAAAAGCAAGATCGTTAAAACCTCCAAACGTGAACTGCAAAAGATTGCAACACCTAGAGAAAGTGAAAAGGATGAAGATGCACCAAATACCTCTGGGAAACGCGGTGTTAAAAGCAATCCGGGACTGTCTTGCTTAGTTACAGACATAGCTGTATCCTAATAGATTAGTCAACCTATTATTGTCAGGATGAGAGGCAATGTTTATCAGAATTGAGGTATATTTGTAGTCTATGGCCTGAAGCTAATGATTGCAGTCAGGCGGGTGAATCATTTATAAATTATCTTTGGCTGTGTAAGGTCAGAAAGGTTCAAATTCATCTCCAGCTTTGAAGGCCTGATGACGACGCACACACACTGGACCAGTATTCTGCACTAATGAACTTGTGCTCAAGAAGCTTTCTTAATTCTTATAAACATGTGTATGGTATAGGATTTGTATAATTTAATTAAGCCCTTGGTAGCAAGTTTTACATTCTCATGAACTGCAACATTATGTTTTTGTTTTGCATGGGAGGCTGCCCAGCG

Fln Alignment:

sp_v1.1_unigene793___KASRKLENGLGMRKEASSGETAKSKTSLSMSLNKSVSLVADKGTSTRQSSANKKQPSKPLRNGSTALIASKAQVSMNGVPETAELRGVHKENIRHHKESTKKPTKQIENKHSESKMEGDTYTSTSAGSRRSISESRLENKATRATFSFKSDERAEKRKEFYMKLEEKMNAKEAEMNQIQAKTQEEMEFEIKQLRKSLNFKATPMPTFYQEGVPPKTESKKIP-----APKIXXXXXXXXXXXXXXXXRTHKVSGPVIKNSSLTEKHA--NFREKHVQVPVASINNPPRKAQKEAGS--TNISTIKPIKSKHSSNAS----SKTETLNPARVENSSTKPVCNELEVTVSNTVE
D7MA60_____________KAQRKLKH------EKLSG--GKNISSVHIKKNKEGKSADAKVAASNGSVAPIAQTTKPLK--SKSFNGREAQVTKQGKHDTAPAESVDGDKV--------KPKPQKKQTHETSEDDTQSSNSPKADDGKPRKVGALPNYG----FSFKCDQRAEKRREFYVKLEEKTHAKEEEINSMQAKSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKTELKKIPPTRPKSPKLGRKKTASGGD-------CEETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQPVRKSLPRLPSQKTALPDGKPAPAKAATISAKVKPEKKKLEKDTETVNQSSHPIEEEAQVTVSSSAD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1345	33	66			0.997452
1348	33	66			0.997452
1355	66	33			0.997452
1358	66		33		0.997452
1501			16	83	0.994512
1650		87		12	0.992554
2171		12		87	0.992554
2225			16	66	0.988813
2255	20	80			0.995493
2340	85			14	0.993533
2341	85		14		0.993533
2343			14	85	0.993533
2439	12		87		0.992554
2495		10	90		0.90298
2497	90		10		0.90298
2499	90	10			0.90298
2500	10			90	0.90298
2501		10		90	0.90298
2504		10		90	0.90298
2732		58	41		1.0
2753		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain