SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene784

Length: 1111 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene784

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9S8W6_RICCO	-	-	6.0e-30	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	membrane associated ring finger	-	-	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3675	IPR022143	-	0.0	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 222 - 279

Fln protein: *SMPDITFKLDILFF*NLL*TFGLHVTILLPHLILKGTLKMRTERTMLV*R*LRNVHLLF*NYRLTNMGIQHLSVLILVCIAIDISGNWGSQLDLDDPRVIAMAAAEHRLLEAEYDEYTAGNSSGAACCRSAALIFMALLLLRHALAIASAGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNIIQNRRQRQEAVMTAAEVAFLMQARRARGLRFAGVASAS*

Protein Length: 223

Fln nts: TTAAAGTATGCCTGATATTACTTTTAAACTTGATATACTGTTCTTTTAGAACTTGCTCTAGACTTTTGGTTTGCATGTAACCATTTTGCTTCCTCATCTAATTTTGAAGGGGACCCTTAAAATGCGCACTGAGAGGACTATGTTGGTATAGCGTTAACTAAGAAATGTACATTTGTTATTCTGAAACTACAGACTTACAAACATGGGTATACAGCACCTCAGCGTCCTCATTCTGGTGTGCATTGCCATTGATATCAGTGGAAACTGGGGATCTCAGTTGGACCTGGATGATCCTCGTGTGATAGCTATGGCTGCAGCAGAACACCGCCTTCTGGAAGCTGAATATGATGAATACACAGCAGGCAATTCAAGTGGTGCTGCATGTTGCCGGTCTGCAGCTTTAATTTTCATGGCCCTTTTACTTCTACGTCACGCCCTAGCCATAGCTAGTGCTGGAGGAGATGAGGATGTTTCAACATTCTTCACGCTCCTCTTAAGAACTGCTGGATTCCTTTTGCCATGCTACATTATGGCACGGGCAATGAATATTATACAGAATCGAAGACAGAGACAGGAGGCAGTAATGACAGCAGCTGAAGTGGCTTTTCTTATGCAAGCACGTCGGGCTCGAGGGTTGAGATTTGCAGGAGTTGCATCAGCTTCTTGA___GCCTCACCTGGTCATTAATGGCTTAAAGTGTGAAAAACCTGGGGCGGCTATCCTTAAGGAATTTGGTTTCGAATAATGTTTGTCTTTTGCAAGAATAATGTCCAGCTTGGCTCTGATAAGTTTGCGAATTCTGGAGCCATGGATAAAAGATGCAGATCTTTCTTTTGTTAAACCTATCAATACATGTATCATTGGGGATCTAAATTTAAAGGTCCCTATGAATAGGAAGAGAGTTGCCATTGCAGGTCTAGTTGGGAAAGCATAAATGAGTGTTCATTCCCGTTAGTGAAGAGTTGACTCAATGTAAAGGTCACCATGAAAGTAAAAGGAAAAGCTAAGGATGTATTTCTTTGTATATATCAGCTGAGAAGCTATTTTCCCAACTCTTTTGTGAGCAGTTGTTTGTTTTCTGTTATTAATCAATATGCCTAACCGCTTTAAAAC

Fln Alignment:

sp_v1.1_unigene784___IAIDISGNWGSQLDLDDPRVIAMAAAEHRLLEAEYDEYTAGNSSGAACCRSXXXXXXXXXXXXXXXXXXXXGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNIIQNRRQRQEAVMTAAEVAFLMQARRARGLRFAG
B8LQD2_____________IAIDISGNWGSQLDLNDPRLLAMAAAERHFLEAEYDEYTAANSSGSACCRSAALIFMALLLLRHALAIASAGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNILQHRRQRQEAAMTAAEVAFLLQARRARGLRFAG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
594		88		11	0.923564
635		22		77	0.999999
682			11	88	0.923564
980	71	28			1.0
1009			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain