SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene783

Length: 1003 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene783 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	importin beta-1, putative	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	HEAT	IPR000357	-	88%
Blast2go	Armadillo-like helical	IPR011989	-	88%
Blast2go	Armadillo-type fold	IPR016024	-	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV8

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 334 - 874

Fln protein: VVTLAVTHVYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNLSMAGGTCLGLVARTVGDDVVPLVMPFVEENISKPDWRCREAATYAFGSILEGPSPDKLTPLVNVALNFILNAMKDANSHVKDTTAWTLGRIFEFLHGSTMETPIITQSNFPHILSVLLESLKDAPNVAEKVCGALYFLAQGYEDAGANSSPLSPYFKNIVEALLDAAHREDATESRLRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAY

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTATTTTATTAAGCAAGCACTTCCTGCTCTTGTGCCAATGTTATTAGAGACATTGCTGAAACAGGAAGAGGACCAAGATCAGGATGAGGGGGCATGGAATCTCTCTATGGCTGGAGGAACTTGCTTGGGTCTTGTTGCCAGAACTGTGGGAGATGACGTTGTCCCCCTTGTTATGCCATTTGTAGAAGAAAACATATCAAAGCCAGATTGGAGATGTCGAGAGGCAGCTACTTATGCCTTTGGATCAATTCTGGAGGGTCCATCACCTGATAAGCTTACTCCTCTTGTCAATGTTGCTCTCAACTTTATTCTCAATGCTATGAAGGATGCGAATAGTCATGTTAAGGACACAACTGCATGGACCCTAGGGAGAATATTTGAATTTTTACACGGTTCAACAATGGAGACACCCATAATCACACAGTCAAATTTCCCACATATCCTATCAGTTCTACTTGAAAGCTTGAAGGATGCACCGAATGTTGCTGAAAAAGTCTGTGGTGCGTTGTATTTCCTGGCCCAAGGCTATGAAGATGCAGGGGCAAATTCCTCTCCATTATCTCCGTATTTTAAGAACATTGTTGAGGCTCTTCTTGATGCGGCACATAGGGAGGATGCAACTGAATCTAGGCTGCGGACTGCAGCATACGAGACATTGAATGAGGTTGTTCGTTGTTCAACTAAAGACACAGCTGCTATTGTTATGCAACTTGTTCCTGTCATCATGCTTAAGCTTAATGAAACTTTGGAGATGCAGAAACTATCATCAGAAGGCAAAGAAAAACAGAGTGATTTGCAAGCACTTCTATGTGGTTGCTTGCAAGTGATCATTCAAAAATTGAGTGCTTCGGAGTCAACTAAGTATGGTATTCTACAATATGCTGATCAAATGATGAATCTTTTCTTGAGGGTATTTGCCTGTCGGAGTGCCACTGTTCATGAGGAAGCAATGTTGGCAATAGGAGCTCTGGCATAT

Fln Alignment:

sp_v1.1_unigene783___VTHVYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNLSMAGGTCLGLVARTVGDDVVPLVMPFVEENISKPDWRCREAATYAFGSILEGPSPDKLTPLVNVALNFILNAMKDANSHVKDTTAWTLGRIFEFLHGSTMETPIITQSNFPHILSVLLESLKDAPNVAEKVCGALYFLAQGYEDAGANSSPLSPYFKNIVEALLDAAHREDATESRLRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAY
C0PQV8_____________VPHFHFIKQALPVLVPLLLETLTKQDEDQDQDEGAWNLAMAGGTCLGLVARTVEDDIVPLVMPYVQENISKPDWRCREAATYAFGSIIEGPSLEKLSPLVNMALNFILNALKDENNQVKDTTAWTLGRIFEFLHGPTVQSPVITQANLQSIVAALLESIKDTANVADKVCGAIYFLAQGYEQASAASCPLSPFLPDIIGSLLATADRKDAADSRIRTAAYETLNEIVRCSTQETASVIMQLLPLIMTKLGQTMELQIVSSDDREKQGDLQALLCGVLQVIIQKLGNQETTKYAILQYADQMMALFLQVFACRSATVHEEAMLAIGALAY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
955		33	66		0.997452
956			66	33	0.997452
957	66			33	0.997452
958	66		33		0.997452
960	33			66	0.997452
961	33		66		0.997452
963	33			66	0.997452
964	33			66	0.997452
965	33		66		0.997452
967	33			66	0.997452
971		33		66	0.997452
972	66	33			0.997452
974	66		33		0.997452
975	66			33	0.997452
976			33	66	0.997452
977	66	33			0.997452
978	33	33			0.997753
984	33			66	0.997452
988		33		66	0.997452
993			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain