SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene782

Length: 809 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene782 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-related protein 2 n=6 Tax=Magnoliophyta RepID=ARP2_ORYSJ	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	actin related protein 2	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	91%
Blast2go	actin filament organization	GO:0007015	Biological Process	91%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-like	IPR004000	-	0.0	91%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
469	90			10	0.90298
470		90	10		0.90298
471	10	90			0.90298
472	90		10		0.90298
474		90	10		0.90298
475	10			90	0.90298
477	10	90			0.90298
478			10	90	0.90298
479		10		90	0.90298
483		88	11		0.923564
484	88		11		0.923564
489		11		88	0.923564
491	88	11			0.923564
551		80		20	0.995493
640	25		75		0.996473
729	66		33		0.997452
731		33	66		0.997452
734		33	66		0.997452
735		33		66	0.997452
738			33	66	0.997452
741		33	66		0.997452
745	33			66	0.997452
747		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain