SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene760

Length: 2760 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene760
ATGGGGGATATTCACAATGTGCTTCGCAGTGACGAAAGCGATTAATACCCCAACTCAGAGTTCGGCGCCTCAGAAATAATCGCTACAAGTACCCAAACAAACAAAGTTACAAGAGAGCCACTAGTACCTCTCTCTTTGCATTTATTTCCGCATCTCGCACAGTAGTCTGAGAGCGTATGCGAATGAGACAGTAAAGCAGAGGAGCAATGGCTTCAGTGGCTGTTATCGCCAAACGCTATGCAATACCGACAATTCTGGTGGTCCTGGCTGTTATATGGCAGCTGGTTATACTGCCCACAAGTTTCTCCAGATCTCACTACGATGTTATTGGAGTAAAACAAAATTCTACTAGTGAGGAAATTATTGAAGCATATCAAAGGCTGACCTTGCAATGGCACTCTTACAAGGACACAGAAATCATCACTGAAAATGTTATTGAGATACAACATGCCTTTGAAGTGCTGTCTAACCAATTTAGGAGAAGAGATTATGACTTATTTAACGTTGATGAATTACAGGATGTTGCTAAAGCAGCCAAGAAACAGTATGCTGGGGACAAGTTTTCAAGGTTAAAACTGCCATTACTAAAGATGCCCGAAACTGATCTGATAAATGACAATAGTGAAGTTCTTACTGCTGAGAACTTCAGATCTGTGCTTGGAGAGGAAGGGACCTGGCTGATATTGGTTTATTCTCTTGGAAGTGGAAATTCCCAGCAGTTTTCTCATAGCTGGAAAAGAATTGTTGGTTGGCTGGATGGAGTTGCCAATACTGGACAATTGGAGCTTGGTGAAGTCCAGCTTGCATCGTACCTTGCAGAAAGAGATCGAGCTACAGGCCACCCTTTCTTCCGATATGGGCTTCCTTCTATTATTGCATTTCCTAGGACTTGCAGGCGCCTTGATTGTCTTGTACGGTACTCAGGAAAATTAAATGTGGATGCTATTGTAGACTGGATTGCAACAGATATTCTTGGACTCCCTCGTATTCCCTATTACTCACTGGAATCATTGTTTACAGAGGTTATCCGCAAGGCTGGGCCACATAAGGTCAAAGTAATATGCTTCTCAAAGACTGGACAGCGTGCAGCCCCCTTCCTAAGACAGGCAGTAAGAGATTATTCAGCATATGCCTCTTTTGGGCTTGTGCTATGGAGAGAAGAGAATGCTTCCGTATGGTGGAACATATTTGGAGTGGATTCTGCCCCTGCTATTGTCTTCTTGAAAGATCCTTTTGCAGAACCTGTTGTACATTATGGGGCTATCAATAGTTCTGATTTTCATAATCTGATGGAGCAACATAAAAGTCATGCCCTCCCACAGCTGAGGAGCATAACTTCTATGGATCTTGGATGCGATGTCAAAGGTTACTCTCGAGCTGGTAATGACACATTGACCTGGTACTGTGTCATTGTTGCTGGAAAACCTGGCTCTACACTCAGTAAAGCACGTGAAATTATGCGTAGTGTCCAAGATAATCTTACAAATGAGGTCATTCCAGACACAGTCAGTATATCATCTCTTCCAGATTCGTTAGTTGCTGCATATGCCTTCCAGCAAAAACGCCTTACTCTTGCATGGTTAGATGGAGAAGCTCAGAAAAAATATTGTTTCTTCTACTTGCATTCAGAGAATGTCTTTGAGACTTGTGGACCAAGAAGGTACGCAGAAGAGGAGGATGTGGCAAAAGTTTTTCTCGTACGGTACAGGAGAAACAATTCTGAAGTAAACATAGACGTCAAGAAACAATATAAAAATATTTGGGATACTTTTCGAGAGGATGAAGAGGGTCTTGCTTCTCAACTTGTGGCTAAATACAATGGTTCAATGGAAGGCCCCGAGATACTCTCTTGGATGTCGAACACAATCAAGGATGGCGATTCTGGTGACCTTCCATATTTTAGGGCAAAGACTCCAGATCTCAACCCAGAGGAGTCAAACCCTGCTTGGTCTCTTGTCAAGCAAAAAATTGGTTTCAGTAACAACAGAAGGATGACAGAAAGGGTTAAAGACTTTGTCACTGGAGGATCTGATTATATGAAAGATCCAAGAATAGGTCCAATCCTCCTCCTGGCAAGTGCTTTATACTTGGGTGCTCTTTGGCTTAGAACGAACCAGTCCGAACAGAAAAATGAGCAGGTAAAGAAGGAGCCGGAAAATGTGCAGTCACCATCTTCGTCCAAGGATAAGAGAGCAAATGTGCAGTCACGACATCCATCGAAGGATAAGAGAGCAAATGTGCAGTCAAGATATCCATCTATTACAGATGAAGTGCCACAAGATGCATATCAAGCCTTCGAATCAGACTCAGAGTCAGATTCAGAATGAATTGCAAATACGCTGAAGACTGTAAATTATGTGTCATCCATTATTCACCGGCAGTAAAAAAATGTTGCAAGAACAAGTAACTTTAAAGCCGTTGGAAAATAAAGCGAGAGGGAAAGAGAGTGATTATTTGCGTGTATGGAATTTGCATGTTGTTTAAATTCCAATTCGGTCGTCATAATTTAAGATATCCTCTATTTTAGGGTTACAATGTTTTGTAACGGCAAGTTATTACAATTTATTTTGTTGCGAGTTCATATGAAGCAAATGATTAATTGTTAGGTGGGTAGTTGCACCTATCATTGGGAACAAAATTCATATAGATGTTTACAGAATAATTTTACTTAGGCTGAATGGGGGATTCATGGGCTTTATGTAATTGTACTGAATTCAAAATATTAATTTCAATTATTCATTTTTTGTTTGTGTTTCATCG

Ace file of the UniGene sp_v1.1_unigene760

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein binding protein, putative	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	50%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	63%
Blast2go	Thioredoxin fold	IPR012335	-	63%
Blast2go	Thioredoxin-like fold	IPR012336	-	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7SI93

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MASVAVIAKRYAIPTILVVLAVIWQLVILPTSFSRSHYDVIGVKQNSTSEEIIEAYQRLTLQWHSYKDTEIITENVIEIQHAFEVLSNQFRRRDYDLFNVDELQDVAKAAKKQYAGDKFSRLKLPLLKMPETDLINDNSEVLTAENFRSVLGEEGTWLILVYSLGSGNSQQFSHSWKRIVGWLDGVANTGQLELGEVQLASYLAERDRATGHPFFRYGLPSIIAFPRTCRRLDCLVRYSGKLNVDAIVDWIATDILGLPRIPYYSLESLFTEVIRKAGPHKVKVICFSKTGQRAAPFLRQAVRDYSAYASFGLVLWREENASVWWNIFGVDSAPAIVFLKDPFAEPVVHYGAINSSDFHNLMEQHKSHALPQLRSITSMDLGCDVKGYSRAGNDTLTWYCVIVAGKPGSTLSKAREIMRSVQDNLTNEVIPDTVSISSLPDSLVAAYAFQQKRLTLAWLDGEAQKKYCFFYLHSENVFETCGPRRYAEEEDVAKVFLVRYRRNNSEVNIDVKKQYKNIWDTFREDEEGLASQLVAKYNGSMEGPEILSWMSNTIKDGDSGDLPYFRAKTPDLNPEESNPAWSLVKQKIGFSNNRRMTERVKDFVTGGSDYMKDPRIGPILLLASALYLGALWLRTNQSEQKNEQVKKEPENVQSPSSSKDKRANVQSRHPSKDKRANVQSRYPSITDEVPQDAYQAFESDSESDSE*

Protein Length: 708

Fln nts: ATGGGGGATATTCACAATGTGCTTCGCAGTGACGAAAGCGATTAATACCCCAACTCAGAGTTCGGCGCCTCAGAAATAATCGCTACAAGTACCCAAACAAACAAAGTTACAAGAGAGCCACTAGTACCTCTCTCTTTGCATTTATTTCCGCATCTCGCACAGTAGTCTGAGAGCGTATGCGAATGAGACAGTAAAGCAGAGGAGCA_-_ATGGCTTCAGTGGCTGTTATCGCCAAACGCTATGCAATACCGACAATTCTGGTGGTCCTGGCTGTTATATGGCAGCTGGTTATACTGCCCACAAGTTTCTCCAGATCTCACTACGATGTTATTGGAGTAAAACAAAATTCTACTAGTGAGGAAATTATTGAAGCATATCAAAGGCTGACCTTGCAATGGCACTCTTACAAGGACACAGAAATCATCACTGAAAATGTTATTGAGATACAACATGCCTTTGAAGTGCTGTCTAACCAATTTAGGAGAAGAGATTATGACTTATTTAACGTTGATGAATTACAGGATGTTGCTAAAGCAGCCAAGAAACAGTATGCTGGGGACAAGTTTTCAAGGTTAAAACTGCCATTACTAAAGATGCCCGAAACTGATCTGATAAATGACAATAGTGAAGTTCTTACTGCTGAGAACTTCAGATCTGTGCTTGGAGAGGAAGGGACCTGGCTGATATTGGTTTATTCTCTTGGAAGTGGAAATTCCCAGCAGTTTTCTCATAGCTGGAAAAGAATTGTTGGTTGGCTGGATGGAGTTGCCAATACTGGACAATTGGAGCTTGGTGAAGTCCAGCTTGCATCGTACCTTGCAGAAAGAGATCGAGCTACAGGCCACCCTTTCTTCCGATATGGGCTTCCTTCTATTATTGCATTTCCTAGGACTTGCAGGCGCCTTGATTGTCTTGTACGGTACTCAGGAAAATTAAATGTGGATGCTATTGTAGACTGGATTGCAACAGATATTCTTGGACTCCCTCGTATTCCCTATTACTCACTGGAATCATTGTTTACAGAGGTTATCCGCAAGGCTGGGCCACATAAGGTCAAAGTAATATGCTTCTCAAAGACTGGACAGCGTGCAGCCCCCTTCCTAAGACAGGCAGTAAGAGATTATTCAGCATATGCCTCTTTTGGGCTTGTGCTATGGAGAGAAGAGAATGCTTCCGTATGGTGGAACATATTTGGAGTGGATTCTGCCCCTGCTATTGTCTTCTTGAAAGATCCTTTTGCAGAACCTGTTGTACATTATGGGGCTATCAATAGTTCTGATTTTCATAATCTGATGGAGCAACATAAAAGTCATGCCCTCCCACAGCTGAGGAGCATAACTTCTATGGATCTTGGATGCGATGTCAAAGGTTACTCTCGAGCTGGTAATGACACATTGACCTGGTACTGTGTCATTGTTGCTGGAAAACCTGGCTCTACACTCAGTAAAGCACGTGAAATTATGCGTAGTGTCCAAGATAATCTTACAAATGAGGTCATTCCAGACACAGTCAGTATATCATCTCTTCCAGATTCGTTAGTTGCTGCATATGCCTTCCAGCAAAAACGCCTTACTCTTGCATGGTTAGATGGAGAAGCTCAGAAAAAATATTGTTTCTTCTACTTGCATTCAGAGAATGTCTTTGAGACTTGTGGACCAAGAAGGTACGCAGAAGAGGAGGATGTGGCAAAAGTTTTTCTCGTACGGTACAGGAGAAACAATTCTGAAGTAAACATAGACGTCAAGAAACAATATAAAAATATTTGGGATACTTTTCGAGAGGATGAAGAGGGTCTTGCTTCTCAACTTGTGGCTAAATACAATGGTTCAATGGAAGGCCCCGAGATACTCTCTTGGATGTCGAACACAATCAAGGATGGCGATTCTGGTGACCTTCCATATTTTAGGGCAAAGACTCCAGATCTCAACCCAGAGGAGTCAAACCCTGCTTGGTCTCTTGTCAAGCAAAAAATTGGTTTCAGTAACAACAGAAGGATGACAGAAAGGGTTAAAGACTTTGTCACTGGAGGATCTGATTATATGAAAGATCCAAGAATAGGTCCAATCCTCCTCCTGGCAAGTGCTTTATACTTGGGTGCTCTTTGGCTTAGAACGAACCAGTCCGAACAGAAAAATGAGCAGGTAAAGAAGGAGCCGGAAAATGTGCAGTCACCATCTTCGTCCAAGGATAAGAGAGCAAATGTGCAGTCACGACATCCATCGAAGGATAAGAGAGCAAATGTGCAGTCAAGATATCCATCTATTACAGATGAAGTGCCACAAGATGCATATCAAGCCTTCGAATCAGACTCAGAGTCAGATTCAGAATGAATTGCAAATACGCTGAAGACTGTAAATTATGTGTCATCCATTATTCACCGGCAGTAAAAAAATGTTGCAAGAACAAGTAACTTTAAAGCCGTTGGAAAATAAAGCGAGAGGGAAAGAGAGTGATTATTTGCGTGTATGGAATTTGCATGTTGTTTAAATTCCAATTCGGTCGTCATAATTTAAGATATCCTCTATTTTAGGGTTACAATGTTTTGTAACGGCAAGTTATTACAATTTATTTTGTTGCGAGTTCATATGAAGCAAATGATTAATTGTTAGGTGGGTAGTTGCACCTATCATTGGGAACAAAATTCATATAGATGTTTACAGAATAATTTTACTTAGGCTGAATGGGGGATTCATGGGCTTTATGTAATTGTACTGAATTCAAAATATTAATTTCAATTATTCATTTTTTGTTTGTGTTTCATCG

Fln Alignment:

sp_v1.1_unigene760___AMASVAVIAKRYAIPTILVVLAVIWQLVILPTSFSRSHYDVIGVKQNSTSEEIIEAYQRLTLQWHSYKDTEII-TENVIEIQHAFEVLSNQFRRRDYDLFNVDELQDVAKAAKKQYAGDKFSRLKLPLLKMPETDLINDNSEVLTAENFRSVLGEEGTWLILVYSLGSGNSQQFSHSWKRIVGWLDGVANTGQLELGEVQLASYLAERDRATGHPFFRYGLPSIIAFPRTCRRLDCLVRYSGKLNVDAIVDWIATDILGLPRIPYYSLESLFTEVIRKAGPHKVKVICFSKTGQRAAPFLRQAVRDYSAYASFGLVLWREENASVWWNIFGVDSAPAIVFLKDPFAEPVVHYGAINSSDFHNLMEQHKSHALPQLRSITSMDLGCDVKGYSRAGNDTLTWYCVIVAGKPGSTLSKAREIMRSVQDNLTNEVIPDTVSISSLPDSLVAAYAFQQKRLTLAWLDGEAQKKYCFFYLHSENVFETCGPRRYAEEEDVAKVFLVRYRRNNSEVNIDVKKQYKNIWDTFREDEEGLASQLVAKYNGSMEGPEILSWMSNTIKDGDSGDLPYFRAKTPDLNPEESNPAWSLVKQKIGFSNNRRMTERVKDFVTGGSDYMKDPRIGPIXXXXXXXXXXXXXXRTNQ-SEQKNEQVKKEPENVQSPSSSKDKRANVQSRHPSKDKRANVQSRYPSITDEVPQDAYQA
D7SI93_____________ASSSMASTLKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKWNS--GTEVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQIDVFENVKKQFSGVSFSGINLPLLSAASSDPGDHVFNVITSNDFHSVLEKTEPLLIQIYSLGSNSCRQFSNDWKRIATFLEGVANTGMVELGDARLAAYLAEK-KPTGQPFFRNGLPSLVAFPSGCRTSDCLVRYEGELSVDAVTDWFATAILTLPRISYYSKESLGQAFLAKSSPWKVKVIVFSRTGQRATPFLRQAAKNYWAHASFAFVLWQEEDSSVWWNTFEVESAPAIVFLKDPGVKPVVHHGFFNNSWFVNIMEQNKQQELPQLRSITSMELGCDARGYSRAGYDTMTWYCVILAGRLSLELNKMRETMRRVQQILSSAA--ELNGADKQQPSEPSAIALKDKRLTFTWLDGEAQKQYCFFYIHSEDSYDTCGPRR--DVADVPQLFIVRYKRNATVDDLKVERRPKGIWNPFQEEDVDPASQLVARYNGSGEIPEIIKWISQIIKDGDSRDLPLFRTKTPQLVPEDGDPIWSKGAQSI-LSTSKGLKYRIKSIISGMNDRLGDPRIGPMLLLGSLMSFASIWLKRSQATHQSRLDQPSQPSNMDEDRKTRRNRKTTVSS----------QDRPTSITDMEPKDAYQA

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
582	83			16	0.994512
622	85		14		0.993533
624			14	85	0.993533
963	66		33		0.997452
964	66			33	0.997452
970	66		33		0.997452
971	33			66	0.997452
972		33		66	0.997452
978	66			33	0.997452
979		66	33		0.997452
982	33	66			0.997452
986	33		66		0.997452
1025		33		66	0.997452
1104	80		20		0.995493
1498	11			88	0.923564
1664	22		77		0.999999
1739	11	88			0.923564
1747	88	11			0.923564
1748	88	11			0.923564
1750	88			11	0.923564
1751	88	11			0.923564
1755	88	11			0.923564
1757	88			11	0.923564
1758	88	11			0.923564
1759	88	11			0.923564
1889		10		90	0.90298
1957			14	85	0.993533
1960	14			85	0.993533
1962	85	14			0.993533
1963	85			14	0.993533
1964			85	14	0.993533
1965		85	14		0.993533
1966	14		14		0.984337
1967	85	14			0.993533
1968	85			14	0.993533
1969	85		14		0.993533
1970	85			14	0.993533
1971	85	14			0.993533
1973		14		85	0.993533
1975		14	85		0.993533
1976	14		85		0.993533
2145	87		12		0.992554
2146	87	12			0.992554
2149	87		12		0.992554
2156	12	87			0.992554
2159	87	12			0.992554
2160	87	12			0.992554
2384	90			10	0.90298
2385		10	90		0.90298
2387	90	10			0.90298
2389	90		10		0.90298
2390	90			10	0.90298
2391	90		10		0.90298
2393	80		20		0.999996
2396	26			73	1.0
2463	12		87		0.999964
2467	87		12		0.999964
2468			12	87	0.999964
2534		16		83	0.999991
2588			23	76	1.0
2634	33		66		1.0
2666	68		25		1.0
2759			25	75	0.996473
2762			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain