SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene747

Length: 1675 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene747

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin B-like protein 2-2 n=6 Tax=fabids RepID=A4ZKI4_POPTR	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	calcineurin b-like protein 3	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	94%

Source	InterPros	Term	Type	Identity
Blast2go	Recoverin	IPR001125	-	94%
Blast2go	Calcium-binding EF-hand	IPR002048	-	94%
Blast2go	EF-hand-like domain	IPR011992	-	94%
Blast2go	EF-HAND 2	IPR018249	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLG4

Fln msg:

Fln protein: MLQCLEGFNHLLGCLVQCFDTKVFKKPRGLEDPEIIARDTVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIDFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTSFPSFVFHSQVDDT*

Protein Length: 228

Fln nts: TAAAATGATCGACGCTTCCCTGAATTGCGATTGTAAATGTGTAATTACATACACTGCGGTGGGCGTAGGATTAGGGGTGATAATTTTGCATTAATCAGAAGTAGAAGAAGCAGCAGCAGCAAGGGTTTGATCGCCTTTGGAAAATCCGACGAACTAAGGGCGTTTCCTACTTGTGAATGTCGAGGTATGGAGTGTGCTGACATTTTGGAAATATC_-_ATGTTGCAGTGCCTAGAGGGATTCAACCACCTACTAGGTTGCCTGGTACAGTGTTTTGACACAAAAGTTTTCAAGAAACCTCGGGGCCTTGAAGATCCTGAAATAATAGCAAGGGACACAGTTTTTAGTGTGAGTGAGGTAGAAGCTCTGTATGAGCTATTTAAGAAGATTAGCAGTGCTGTGATTGATGATGGTCTTATCAACAAGGAGGAGTTTCAACTAGCCTTATTCAAGACAAACAAAAAGGAAAGCTTATTTGCAGACAGAGTTTTTGACTTGTTTGACACAAAGCACAATGGCATCTTAGGTTTTGAAGAATTTGCACGAGCTCTTTCCGTGTTTCACCCAAATGCTCCAATAGACGACAAAATAGACTTCTCTTTCCAACTTTATGATCTCAAGCAACAAGGGTTTATTGAGCGACAAGAGGTGAAGCAAATGGTAGTAGCTACACTTGCCGAGTCTGGCATGAACCTTTCAGATGATGTAATTGAAAGTATTATTGACAAGACCTTCGAGGAGGCAGATACCAAACATGATGGAAGGATTGACAAGGAAGAGTGGAGGAGTCTTGTTCTGCGACATCCTTCACTTCTGAAAAACATGACACTCCAGTATCTCAAGGACATCACAACATCTTTTCCGAGCTTTGTCTTCCATTCACAGGTGGATGATACATGA___ATAGTTTTAAAACAATTCTACGAAGCTACATAATCTTCCGCCTCTAGCAGGAAAGGCAGGAGTAATTGTGTTTTTTAAAATATTTATTGTGAAGGGTGCCTATCCCATATGTGCAATTTTTTCCATTGTACCAGGACTAAAGTTGCTTCTCCGCAACACATATTGTGGATATTTTATCTACATATATTTGTTCTAAAAAGCAGATTAATTATTATTTGTGTCTTTCTATTTGTTGTTTTGAGTTTGGTCCATTCCTGAAGCTGTAATACTTGTATGCATTGAAGCTGTGGTGCCATGCTGTGAATTTCATGTGACATGGCTGGTATAAATTTGGTGTGTTTGGTTAGTAAATTCACATGCATTATCTTTTTGTGTGCTTTATATACAATGTTTGCCACTCTTGCCATGTGATTTGACAAAGGAGAAATAATTGAATCCTCCCTGACATGTCAAGGCAAGATTTTATATGTTGTGATTATACTTGTTAGTCAATGCCTCATCATACTCTTTTTCCTCGAGAGTCCATCACTTCATTTGAGTAGATAGCATATCTAGGAAGACATTGCAAATCTGCTAGCAAAGGGACGTGTAGTGAGAGTTGATTGTTGGCATGGTCAATCCAACTATGTTGCAAGCTCTATTTTCCAGATAAAATAACGTTTGTAATTAAATCATGTGATATATTGGTTGCAAACTACTGAATAAGAAATATCCTTGTTTAGATAGTCTTTTTGAAAAAATGTATGTGAACTACTTCACAACATTTATCCACAAACCAT

Fln Alignment:

sp_v1.1_unigene747___MLQCLEGFNHLLGCLVQCFDTKVFKKPRGLEDPEIIARDTVFSVSEVEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIDFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTSFPSFVFHSQVDDT
A9NLG4_____________MLQCLEGISKLIDCFVQSFDIKVFKHVQGLKDPETIASETVFSVSEVEALYELFKRISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKRNGLLGFEEFACALSVFHPNAPIDDKIEFSFQLYDLKQKGFIGRQEVKQMVVATLAESGMNLSDDVVENIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLPYLKDITTSFPSFVFHSQVEDT

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1011			77	22	0.999999
1089	10			90	0.90298
1090		11		88	0.923564
1093	88			11	0.923564
1094	88		11		0.923564
1095	88		11		0.923564
1096	88	11			0.923564
1097	88			11	0.923564
1101		10	90		0.90298
1104		10		90	0.90298
1244	90	10			0.90298
1247	90	10			0.90298
1248	90		10		0.90298
1249	90			10	0.90298
1250			10	90	0.90298
1251	10			90	0.90298
1255	90			10	0.90298
1258		90	10		0.90298
1259	90	10			0.90298
1261			10	90	0.90298
1266		10		90	0.90298
1267	10			90	0.90298
1268		20		80	0.999996
1638	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
109	121	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain