SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene745

Length: 2142 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene745
ATGGGGAATGGTAGGTTGTTGTTGATGGTGGTGGTGGAAGAGGAGGAGGAAAAAGAATGGAAGGGCTTCTGGAACTCTCCGCCTCCGATTTCTTCTGCTCCGCTCCCGCTTCCACCTCGCCGAAGGGATCCAGGGTAGTAATCAGCCTTGAACGCCTGTCTCTGGACGAGAAAAGTCTCTCCGGCGACCGCCCACCGCCGATCAGGACCCTGGAGAGCACAAAGAGCACAGACTGCAGTGAATTAATGTCGAAGAATCAGGCTTCAGTGAAGGGTGTCCAGACGCCGGTTTCCGATTCGAATCCCATGATGACTGATGCCTGGGAAAATCTCCGGCGGTCGCTAGTGTATTTTCGCGGCAAGGCCGTGGGCACCATTGCCGCGTCGGATTCCAACGAGGAAGCGCTGAATTATAACCAGGTTTTCGTGAGGGATTTTGTGCCGAGCGCCCTGGCGTTTCTGATGAACGAGGAACCTGAGATTGTGAAGAATTTTCTGCTCAAGACGCTGTATCTTCAAGGGTGGGAGAAGCGGATTGACTGTTTTACACTCGGGGAAGGAGTCATGCCGGCTTCTTTCAAGGTCCTTCACGATCCCGTCAGGAATGCGGAGATCCTCATTGCGGATTTTGGAGAGAGCGCGATTGGGAGAGTGGCGCCTGTGGATTCTGGGTTTTGGTGGATAATTCTTCTCAGAGCGTATACGAAGTCTACCGGAGATCATGCGTTGGCTGAGATGCCTGAGATTCAGCGTGGGATACGGTTGATTCTGAGTCTCTGCCTCTCCGAGGGATTCGATACGTTCCCCACCTTGCTGTGCGCTGACGGTTGCAGCATGATTGACAGACGAATGGCAATATACGGTTACCCGATCGAGATTCAGGCCCTTTTCTTCTTCGCCCTCAGCTGTGCACGAAAGCTGCTGAAGCCCGAGGGCGCCGGGAAAGAATTTATCGAGCGAATCGACAAGAGGATGCACGCCCTGAGCTACCACATGCGTTCTTATTTCTGGCTCGACTTCCAGCAGCTCAACAATATTTACCGTTACAAGACGGAAGAATACTCTCACACTGCTGTCAACAAATTCAATGTCATCCCGGACTCCATTCCCGATTGGGTTTTCGATTTCATGCCCATGCGGGGCGGTTACTTCATCGGGAACGTGAGCCCTGCGCGCATGGATTTCAGATGGTTTTGCCTCGGGAACTGTGTAGCAATACTCAGTTCGCTGGCGACGCCCGAGCAAGCATCTGCAATAATGGACCTGCTGGAGGAGAGGTGGCAAGATTTAATTGGCGAGATGCCTCTCAAAATTTCGTACCCAGCTCTTGAAGGTCATGACTGGCGAATCGTTACAGGATGCGATCCTAAAAATACAAGATGGAGTTATCACAACGGCGGTTCCTGGCCAGTTCTCCTGTGGCTGTTGACAGGGGCCTGCATAAAGTCGGGGAGGCCGCAGATAGCGAGAAGAGCAATCGAGCTGGTGGAGCAGAGGCTCTCAAAGGACGGATGGCCTGAATACTATGACGGGAAGATGGGTCGATACGTGGGGAAGCAGGCAAGAAAGCTTCAGACATGGTCCATTTCCGGCTATCTCGTTGCCAAAATGATGCTGGAAGACCCTTCTCATCTGGGCATGATTTCGTTAGAGGAGGACCGCAAAATCATGAAGCCCCGTCTTACCAGATCCGTTTCCTGGACTTGTTAGTCCTTTCTAAATATATACGATATCATGATATCATATTCTGCTTACACAGAATGAGGAGCGCCCTCTATTCCCTCTACCCACCCACGCACCTTATTTTGCCTGAATTTTCTTAGCATCAGAATGCAAAACAGAATGTAACCGCTGCAGCCATGGCATTGAACAGTACAACACAACACGAAACACTTGCAAATTGTTGGGGAAGGTAAAAAAAATCGTTATGGCATTCCATTCTAATGTGGTTTTGTAGTTTTCAACGATGGTGACTCTGGTTTGTTACCCAACAATATACACCATAAACCTAAGAGCCGCCTGGTGGTCACGTTCATATGTTCATGTTTACGTCCTTGTCAAATAATGACGACTTTCTATAAAGAACCAGACTGAAATAATGAAGAAAACAGGTTCAGAAAGAACATACAATTTTTAAATGTGG

Ace file of the UniGene sp_v1.1_unigene745 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-fructofuranosidase, putative n=3 Tax=rosids RepID=B9SLD4_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	80%
Blast2go	beta- beta-	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	86%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant neutral invertase	IPR006937	-	0.0	86%
Blast2go	Six-hairpin glycosidase-like	IPR008928	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8RBK2

Fln msg:

Fln protein: MEGLLELSASDFFCSAPASTSPKGSRVVISLERLSLDEKSLSGDRPPPIRTLESTKSTDCSELMSKNQASVKGVQTPVSDSNPMMTDAWENLRRSLVYFRGKAVGTIAASDSNEEALNYNQVFVRDFVPSALAFLMNEEPEIVKNFLLKTLYLQGWEKRIDCFTLGEGVMPASFKVLHDPVRNAEILIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDHALAEMPEIQRGIRLILSLCLSEGFDTFPTLLCADGCSMIDRRMAIYGYPIEIQALFFFALSCARKLLKPEGAGKEFIERIDKRMHALSYHMRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSSLATPEQASAIMDLLEERWQDLIGEMPLKISYPALEGHDWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTGACIKSGRPQIARRAIELVEQRLSKDGWPEYYDGKMGRYVGKQARKLQTWSISGYLVAKMMLEDPSHLGMISLEEDRKIMKPRLTRSVSWTC*

Protein Length: 552

Fln nts: ATGGGGAATGGTAGGTTGTTGTTGATGGTGGTGGTGGAAGAGGAGGAGGAAAAAGA_-_ATGGAAGGGCTTCTGGAACTCTCCGCCTCCGATTTCTTCTGCTCCGCTCCCGCTTCCACCTCGCCGAAGGGATCCAGGGTAGTAATCAGCCTTGAACGCCTGTCTCTGGACGAGAAAAGTCTCTCCGGCGACCGCCCACCGCCGATCAGGACCCTGGAGAGCACAAAGAGCACAGACTGCAGTGAATTAATGTCGAAGAATCAGGCTTCAGTGAAGGGTGTCCAGACGCCGGTTTCCGATTCGAATCCCATGATGACTGATGCCTGGGAAAATCTCCGGCGGTCGCTAGTGTATTTTCGCGGCAAGGCCGTGGGCACCATTGCCGCGTCGGATTCCAACGAGGAAGCGCTGAATTATAACCAGGTTTTCGTGAGGGATTTTGTGCCGAGCGCCCTGGCGTTTCTGATGAACGAGGAACCTGAGATTGTGAAGAATTTTCTGCTCAAGACGCTGTATCTTCAAGGGTGGGAGAAGCGGATTGACTGTTTTACACTCGGGGAAGGAGTCATGCCGGCTTCTTTCAAGGTCCTTCACGATCCCGTCAGGAATGCGGAGATCCTCATTGCGGATTTTGGAGAGAGCGCGATTGGGAGAGTGGCGCCTGTGGATTCTGGGTTTTGGTGGATAATTCTTCTCAGAGCGTATACGAAGTCTACCGGAGATCATGCGTTGGCTGAGATGCCTGAGATTCAGCGTGGGATACGGTTGATTCTGAGTCTCTGCCTCTCCGAGGGATTCGATACGTTCCCCACCTTGCTGTGCGCTGACGGTTGCAGCATGATTGACAGACGAATGGCAATATACGGTTACCCGATCGAGATTCAGGCCCTTTTCTTCTTCGCCCTCAGCTGTGCACGAAAGCTGCTGAAGCCCGAGGGCGCCGGGAAAGAATTTATCGAGCGAATCGACAAGAGGATGCACGCCCTGAGCTACCACATGCGTTCTTATTTCTGGCTCGACTTCCAGCAGCTCAACAATATTTACCGTTACAAGACGGAAGAATACTCTCACACTGCTGTCAACAAATTCAATGTCATCCCGGACTCCATTCCCGATTGGGTTTTCGATTTCATGCCCATGCGGGGCGGTTACTTCATCGGGAACGTGAGCCCTGCGCGCATGGATTTCAGATGGTTTTGCCTCGGGAACTGTGTAGCAATACTCAGTTCGCTGGCGACGCCCGAGCAAGCATCTGCAATAATGGACCTGCTGGAGGAGAGGTGGCAAGATTTAATTGGCGAGATGCCTCTCAAAATTTCGTACCCAGCTCTTGAAGGTCATGACTGGCGAATCGTTACAGGATGCGATCCTAAAAATACAAGATGGAGTTATCACAACGGCGGTTCCTGGCCAGTTCTCCTGTGGCTGTTGACAGGGGCCTGCATAAAGTCGGGGAGGCCGCAGATAGCGAGAAGAGCAATCGAGCTGGTGGAGCAGAGGCTCTCAAAGGACGGATGGCCTGAATACTATGACGGGAAGATGGGTCGATACGTGGGGAAGCAGGCAAGAAAGCTTCAGACATGGTCCATTTCCGGCTATCTCGTTGCCAAAATGATGCTGGAAGACCCTTCTCATCTGGGCATGATTTCGTTAGAGGAGGACCGCAAAATCATGAAGCCCCGTCTTACCAGATCCGTTTCCTGGACTTGTTAG___TCCTTTCTAAATATATACGATATCATGATATCATATTCTGCTTACACAGAATGAGGAGCGCCCTCTATTCCCTCTACCCACCCACGCACCTTATTTTGCCTGAATTTTCTTAGCATCAGAATGCAAAACAGAATGTAACCGCTGCAGCCATGGCATTGAACAGTACAACACAACACGAAACACTTGCAAATTGTTGGGGAAGGTAAAAAAAATCGTTATGGCATTCCATTCTAATGTGGTTTTGTAGTTTTCAACGATGGTGACTCTGGTTTGTTACCCAACAATATACACCATAAACCTAAGAGCCGCCTGGTGGTCACGTTCATATGTTCATGTTTACGTCCTTGTCAAATAATGACGACTTTCTATAAAGAACCAGACTGAAATAATGAAGAAAACAGGTTCAGAAAGAACATACAATTTTTAAATGTGG

Fln Alignment:

sp_v1.1_unigene745___SLDEKSLSGDRPPPIRTLESTKSTDCSELMSKNQ-ASVKGVQTPVSDSNPMMTDAWENLRRSLVYFRGKAVGTIAASDSNEEALNYNQVFVRDFVPSALAFLMNEEPEIVKNFLLKTLYLQGWEKRIDCFTLGEGVMPASFKVLHDPVRNAEILIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDHALAEMPEIQRGIRLILSLCLSEGFDTFPTLLCADGCSMIDRRMAIYGYPIEIQALFFFALSCARKLLKPEGAGKEFIERIDKRMHALSYHMRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSSLATPEQASAIMDLLEERWQDLIGEMPLKISYPALEGHDWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTGACIKSGRPQIARRAIELVEQRLSKDGWPEYYDGKMGRYVGKQARKLQTWSISGYLVAKMMLEDPSHLGMISLEEDRKIMKPRLTRSVSWTC
D8RBK2_____________SLDERTLSDLVSPGISPLPPSRH-EIGENFSMNWFRSASNTPRSLLDPNPAMIDAWEQLRRSLVYFRDKPIGTIAANDPVEESLNYNQVFVRDFVPSALAFIMNGEPEIAKNFLMKTLRLQAWEKRIDCFTLGEGVMPASFKVLHDPSRT-DTMIADFGESAIGRVAPVDSGFWWIILLRAYVKATGDHNLSDDPDCQRGIRLILTLCLSEGFDTFPTLLCADGCCMIDRRMGIYGYPIEIQALFFMALRCAKFLLKPEAGGKEFIERIDKRLHALRYHLRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMKGGYFIGNVSPARMDFRWFTIGNCVAILSSLTTPEQATAIMDLIEERWDDLIGEMPLKVTYPALEGHEWKIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEIAEARLSKDGWPEYYDGKTGRYIGKQARKLQTWSIAGYLVAKMMLEDPSHLGMVSLEEDKK-TKPYLTRSNSWTC

SNPs (tot: 7)

Position	A %	C %	T %	Probability
2114	85		14	0.999981
2115		78	14	0.999974
2120	72	9	18	0.999994
2121	81		18	0.999994
2123	88		11	0.923564
2128	40	60		1.0
2131	75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
2106	2117	CCA CCA CCA CCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain