SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene735

Length: 2436 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene735
CTATCATTCAACAACCATGGGATTAGTTGCTGTTGACAAGAATACAGTTGCGATTTCTGTATCAGATGTCATGTTGGCATTTGCTGCTTACCCAATGGAAATTCCTGCAGAGGTTGTTTTTCTGCATCCTGTACACAATTATGCATTAGTAGCATATGATCCAGCTGCACTAGGTCCAGCTGGTGCTGCAGCTGTGCGTGCAGCAGTTCTTCTTCCTGAACCTGCCTTGCGTAGGGGTGATGCTGTCTATCTTGTTGGTTTAAATCGGAGCTTACAAGCTACATCACGTAAGTCCATTGTCACAAACCCAGGAGCTGCCTTGAATATTGGTGCAGCTGATTGCCCTCGGCATAGAGCTATGAACATGGAGGTCATTGAATTAGACACAGATTTTGGGCATACATTTTCTGGTGTTCTAGCAGATGAGCTGGGAAGAGTTCAGGCATTATGGGGAAGCTTCTCTACGCAGGTGAAATATAGCGATAGTTCAGATGATCATCAGTTTGTACGAGGGATTCCGATTTATGCTATTAGTCAGGTGTTAGAGAAGATTATAAATGGCACTGAAGGTCCACCTTTGCTTATAAATGGAATCAAAAGACCTATGCCTCTTGTCCGCATCTTAGAGGCTGAGCTTTATCCAACTTTACTTTCAAAGGCCCGCAGCTTTGGATTAAGTGACGAGTGGGTTAGAGCATTAGCAAAAAAGGATTCTATCAGACGACAGGTGCTACGCGTAAAGGGTTGTTTGGCTGGATCACGAGCAGAACTTGTTTTGGAGCAAGGGGACATGCTATTAGCCATAGATGGGGAACCAATTACCAATTTTCGTGATGTGGAGAATGCTTGCCAACGCCTTGATGAGTGCAAGGATCCAGAAGGAAATCTAAGGATGACAGTTTTTCGTCAGGGTTTGGAGTTGGAGCTTCTTGTAGGGACTGATGTAAGAGATGGGTTTGGAACAACGCACATGGCAAATTGGTGTGGGTCTGTTGTTCAGGACCCACACCCAGCTGTCCGTGCATTGGGATTTTTACCAGAAGAAGGGCATGGGGTATATGTGGCAAGATGGTGCCATGGCAGCCCTGTGCATCGATATGGACTTTATGCATTGCAGTGGATTGTTGAAGTGAATGGAAAGCCAACTCCTGATCTACAGACATTTGTAAATGTAACAAAGGAACTGGAGCATGGTGAGTTTGTTCGTGTCAGGACTGTCCATTTGAACGGAAAGCCACGTGTTTTTACTTTGAAGCAAGATCTACACTACTGGCCTACATGGGAACTGACCTTTGACCCTGAGACTGCAGCATGGTGTCGGAGAACCATCAAAGCTTTGGGTGATAATTTTTAATGAGGTTGGTTTCTAAATTTAAGCATTTCATTTCACTACATCTCATTGTGCCTCTGCCTATCCTTTGGAGCAAAGCGCTGTGTATCAGCCTCCACTCAACAACTTGTTGTGGCTTTGTCATAGTGATGGAAGGTGCAGAGAGTTTGTGTAGTGCTTTGGAGGCTTCTATACCATGCCTACACTCATGTCAGGTGATTAGCCATGTAATATAAGAGTGAATAGTTTCATGGATTCCTTGTTCTGCTTAATAATTGCTACAAAAACATTAGAGTAACAAAACTGCTGCCTTGAGCATAAGCAAATCCAAAGAGCAAGGCAGTTCAAATTTTTCCACCTCGATTGCAGATAGGCAGAAAAAACTCTCCGTGAGGCTATATGATGCAAAACATCATGTGAGCCATAGATTAAGGGTTAAATTTTCTAATGCTTAGCATATGCTCTTAATCGTAGCTTTGATGTTTCTCTAATATCATGTGGGAATTATACCCTTGAATCAATATATTAAACTCAATAAGCATTTGGGATTAGCAGCACTAATAATAGGAAGAATGCAGCTTTTGAAATAAGATCAATCTCTAAAAATAAATTCAGCAGCATTCCTCAGAATCTTTTGCAGAGTGTATATTTCTGGCAATTAGATAATCCAAGAGTTGATCAATCAAGATGCTGTAACTGAAATGGAAGGATTATCAAAAGCTATAAATTTGATAATGTGATAATTGGCAACAACAATTATTATACAGAGTTAAATATTCTTAGCAAATGCATCGCTCATGAGAGTCCACCATACCAATGGTATATTGTCAGCACATTGTCTGAGGATTTTCATTTGAAAGATCCTTTGTATCATCTGTATGATTGTGTTAGCAAGGTGTGATTGCACTTATAATATATGGGATATTTGAAGACATTAATAATGTGAAGGGATAGCATCATGTATTAGGGATATGTGATTGTGACTTTTGTATCCCAGTTGGGCCAGTTTTTGAGCTATCCAATTTGCAATATGTAAGAGGTGCATTTGGTATAATATTCTCTGTATGGACTAAAGATATTATTAAAGAATGGAGACATTTATATCC

Ace file of the UniGene sp_v1.1_unigene735 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	75%
FL-Next	sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	photoinhibition	GO:0010205	Biological Process	84%
Blast2go	peptidase activity	GO:0008233	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PDZ domain	IPR001478	-	0.0	84%
Blast2go	Peptidase cysteine/serine, trypsin-like	IPR009003	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RY22

Fln msg: your sequence is shorter than subject: 451 - 1097

Fln protein: YHSTTMGLVAVDKNTVAISVSDVMLAFAAYPMEIPAEVVFLHPVHNYALVAYDPAALGPAGAAAVRAAVLLPEPALRRGDAVYLVGLNRSLQATSRKSIVTNPGAALNIGAADCPRHRAMNMEVIELDTDFGHTFSGVLADELGRVQALWGSFSTQVKYSDSSDDHQFVRGIPIYAISQVLEKIINGTEGPPLLINGIKRPMPLVRILEAELYPTLLSKARSFGLSDEWVRALAKKDSIRRQVLRVKGCLAGSRAELVLEQGDMLLAIDGEPITNFRDVENACQRLDECKDPEGNLRMTVFRQGLELELLVGTDVRDGFGTTHMANWCGSVVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEVNGKPTPDLQTFVNVTKELEHGEFVRVRTVHLNGKPRVFTLKQDLHYWPTWELTFDPETAAWCRRTIKALGDNF*

Protein Length: 452

Fln nts: CTATCATTCAACAACCATGGGATTAGTTGCTGTTGACAAGAATACAGTTGCGATTTCTGTATCAGATGTCATGTTGGCATTTGCTGCTTACCCAATGGAAATTCCTGCAGAGGTTGTTTTTCTGCATCCTGTACACAATTATGCATTAGTAGCATATGATCCAGCTGCACTAGGTCCAGCTGGTGCTGCAGCTGTGCGTGCAGCAGTTCTTCTTCCTGAACCTGCCTTGCGTAGGGGTGATGCTGTCTATCTTGTTGGTTTAAATCGGAGCTTACAAGCTACATCACGTAAGTCCATTGTCACAAACCCAGGAGCTGCCTTGAATATTGGTGCAGCTGATTGCCCTCGGCATAGAGCTATGAACATGGAGGTCATTGAATTAGACACAGATTTTGGGCATACATTTTCTGGTGTTCTAGCAGATGAGCTGGGAAGAGTTCAGGCATTATGGGGAAGCTTCTCTACGCAGGTGAAATATAGCGATAGTTCAGATGATCATCAGTTTGTACGAGGGATTCCGATTTATGCTATTAGTCAGGTGTTAGAGAAGATTATAAATGGCACTGAAGGTCCACCTTTGCTTATAAATGGAATCAAAAGACCTATGCCTCTTGTCCGCATCTTAGAGGCTGAGCTTTATCCAACTTTACTTTCAAAGGCCCGCAGCTTTGGATTAAGTGACGAGTGGGTTAGAGCATTAGCAAAAAAGGATTCTATCAGACGACAGGTGCTACGCGTAAAGGGTTGTTTGGCTGGATCACGAGCAGAACTTGTTTTGGAGCAAGGGGACATGCTATTAGCCATAGATGGGGAACCAATTACCAATTTTCGTGATGTGGAGAATGCTTGCCAACGCCTTGATGAGTGCAAGGATCCAGAAGGAAATCTAAGGATGACAGTTTTTCGTCAGGGTTTGGAGTTGGAGCTTCTTGTAGGGACTGATGTAAGAGATGGGTTTGGAACAACGCACATGGCAAATTGGTGTGGGTCTGTTGTTCAGGACCCACACCCAGCTGTCCGTGCATTGGGATTTTTACCAGAAGAAGGGCATGGGGTATATGTGGCAAGATGGTGCCATGGCAGCCCTGTGCATCGATATGGACTTTATGCATTGCAGTGGATTGTTGAAGTGAATGGAAAGCCAACTCCTGATCTACAGACATTTGTAAATGTAACAAAGGAACTGGAGCATGGTGAGTTTGTTCGTGTCAGGACTGTCCATTTGAACGGAAAGCCACGTGTTTTTACTTTGAAGCAAGATCTACACTACTGGCCTACATGGGAACTGACCTTTGACCCTGAGACTGCAGCATGGTGTCGGAGAACCATCAAAGCTTTGGGTGATAATTTTTAA___TGAGGTTGGTTTCTAAATTTAAGCATTTCATTTCACTACATCTCATTGTGCCTCTGCCTATCCTTTGGAGCAAAGCGCTGTGTATCAGCCTCCACTCAACAACTTGTTGTGGCTTTGTCATAGTGATGGAAGGTGCAGAGAGTTTGTGTAGTGCTTTGGAGGCTTCTATACCATGCCTACACTCATGTCAGGTGATTAGCCATGTAATATAAGAGTGAATAGTTTCATGGATTCCTTGTTCTGCTTAATAATTGCTACAAAAACATTAGAGTAACAAAACTGCTGCCTTGAGCATAAGCAAATCCAAAGAGCAAGGCAGTTCAAATTTTTCCACCTCGATTGCAGATAGGCAGAAAAAACTCTCCGTGAGGCTATATGATGCAAAACATCATGTGAGCCATAGATTAAGGGTTAAATTTTCTAATGCTTAGCATATGCTCTTAATCGTAGCTTTGATGTTTCTCTAATATCATGTGGGAATTATACCCTTGAATCAATATATTAAACTCAATAAGCATTTGGGATTAGCAGCACTAATAATAGGAAGAATGCAGCTTTTGAAATAAGATCAATCTCTAAAAATAAATTCAGCAGCATTCCTCAGAATCTTTTGCAGAGTGTATATTTCTGGCAATTAGATAATCCAAGAGTTGATCAATCAAGATGCTGTAACTGAAATGGAAGGATTATCAAAAGCTATAAATTTGATAATGTGATAATTGGCAACAACAATTATTATACAGAGTTAAATATTCTTAGCAAATGCATCGCTCATGAGAGTCCACCATACCAATGGTATATTGTCAGCACATTGTCTGAGGATTTTCATTTGAAAGATCCTTTGTATCATCTGTATGATTGTGTTAGCAAGGTGTGATTGCACTTATAATATATGGGATATTTGAAGACATTAATAATGTGAAGGGATAGCATCATGTATTAGGGATATGTGATTGTGACTTTTGTATCCCAGTTGGGCCAGTTTTTGAGCTATCCAATTTGCAATATGTAAGAGGTGCATTTGGTATAATATTCTCTGTATGGACTAAAGATATTATTAAAGAATGGAGACATTTATATCC

Fln Alignment:

sp_v1.1_unigene735___YHSTTMGLVAVDKNTVAISVSDVMLAFAAYPMEIPAEVVFLHPVHNYALVAYDXXXXXXXXXXXXXXXXXXXXXXXRRGDAVYLVGLNRSLQATSRKSIVTNPGAALNIGAADCPRHRAMNMEVIELDTDFGHTFSGVLADELGRVQALWGSFSTQVKYSD-SSDDHQFVRGIPIYAISQVLEKIINGTEGPPLLINGIKRPMPLVRILEAELYPTLLSKARSFGLSDEWVRALAKKDSIRRQVLRVKGCLAGSRAELVLEQGDMLLAIDGEPITNFRDVENACQRLDECKDPEGNLRMTVFRQGLELELLVGTDVRDGFGTTHMANWCGSVVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEVNGKPTPDLQTFVNVTKELEHGEFVRVRTVHLNGKPRVFTLKQDLHYWPTWELTFDPETAAWCRRTIKAL
Q8RY22_____________YHSSNMGLAVVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALIAYNPSAMDPASASVIRAAELLPEPALQRGDSVYLVGLSRNLQATSRKSIVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSSFSGALTDEQGRIRAIWGSFSTQVKYSSTSSEDHQFVRGIPVYAISQVLEKIITGGNGPALLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDEWIQVLVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAVNKMPVTCFNDIEAACQTLDKGSYSDENLNLTILRQGQELELVVGTDKRDGNGTTRVINWCGCVVQDPHPAVRALGFLPEEGHGVYVTRWCHGSPAHRYGLYALQWIVEVNGKKTPDLNAFADATKELEHGQFVRIRTVHLNGKPRVLTLKQDLHYWPTWELRFDPETALWRRNILKAL

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
548			14	85	0.993533
554	14			85	0.993533
557		14		85	0.993533
560			14	85	0.993533
561		85	14		0.993533
562		85		14	0.993533
565	85	14			0.993533
567		14		85	0.993533
616	87		12		0.992554
637		85		14	0.993533
640			14	85	0.993533
642	85		14		0.993533
644		14	85		0.993533
648	85	14			0.993533
649	14			85	0.993533
651			14	85	0.993533
653		85		14	0.993533
654		14		85	0.993533
656	85	14			0.993533
659	85		14		0.993533
720	14		85		0.993533
760		40		60	1.0
962			7	92	0.999602
969	91	8			0.999807
975		90	9		0.999842
982	9			90	0.999842
992		9	90		0.999872
1075		88		11	0.923564
1076		88	11		0.923564
1078	88		11		0.923564
1079		88		11	0.923564
1080		88	11		0.923564
1081	11			88	0.923564
1082	11	88			0.923564
1084			20	80	0.995493
1085		20		80	0.995493
1086	75	25			0.996473
1089	75		25		0.996473
1090	75		25		0.996473
1092		25		75	0.996473
1095		25	25		0.995533
1097		50	50		1.0
1098	50	50			1.0
1100	25	50	25		0.995533
1103	75	25			0.996473
1107		75	25		0.996473
1109		25		75	0.996473
1110	25			75	0.996473
1113		25		75	0.996473
1246	83		16		0.994512
1250		16		83	0.994512
1303		16		83	0.994512
1371	85	14			0.993533
1372		14		85	0.993533
1373	14	85			0.993533
1455		80		20	0.995493
1547	88		11		0.923564
1551	11			88	0.923564
1583	87		12		0.992554
1740		85		14	0.993533
1741		14		85	0.993533
1925	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain