SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene704

Length: 418 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene704
GGAATTGAGTTTGGTCTTTCCAATAGATATCAGATCGAGGCTTCAACCGCCCCTTCCCAGTGGCTACTATGGCAACGGACTCAGTGTCTCCTTCGCCGTGGCAAGAGCAGGGGATTTAATAGAAAAGCCACTGTCTTTTGCTGTCAAATTAATTAGTGACGCCAAAAGAATTGTTGACGATGAGTACGTGAGAGCCCAAATTGACATGCTGGAAGCGGTAGGGCATACTGCACCTACTCTCGTCGGCTCTTTCATGGCCAATGATCACTCCAAAGTTGATTTTGCAGGAGTGGATTTTGGGTGGGGAAAAGCGGAGTATGGAGGCGTTGCGGTGGCTGCGGACCCAAACGAATCAATGTACGTTCGTGTGCGCAGCACAAGTAGCGGAATCGAAAAGATCGTGGTGCCAATTTGTCTA

Ace file of the UniGene sp_v1.1_unigene704 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Benzoyl CoA benzoic acid benzoyltransferase n=1 Tax=Glandularia x hybrida RepID=Q2PF15_VERHY	-	-	5.0e-25	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	benzoyl coenzyme a: benzyl alcohol benzoyl transferase	-	-	7.26797e-33	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	7.26797e-33	60%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	7.26797e-33	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLR5

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 139 - 448

Fln protein: ELSLVFPIDIRSRLQPPLPSGYYGNGLSVSFAVARAGDLIEKPLSFAVKLISDAKRIVDDEYVRAQIDMLEAVGHTAPTLVGSFMANDHSKVDFAGVDFGWGKAEYGGVAVAADPNESMYVRVRSTSSGIEKIVVPICL

Protein Length: 140

Fln nts: GGAATTGAGTTTGGTCTTTCCAATAGATATCAGATCGAGGCTTCAACCGCCCCTTCCCAGTGGCTACTATGGCAACGGACTCAGTGTCTCCTTCGCCGTGGCAAGAGCAGGGGATTTAATAGAAAAGCCACTGTCTTTTGCTGTCAAATTAATTAGTGACGCCAAAAGAATTGTTGACGATGAGTACGTGAGAGCCCAAATTGACATGCTGGAAGCGGTAGGGCATACTGCACCTACTCTCGTCGGCTCTTTCATGGCCAATGATCACTCCAAAGTTGATTTTGCAGGAGTGGATTTTGGGTGGGGAAAAGCGGAGTATGGAGGCGTTGCGGTGGCTGCGGACCCAAACGAATCAATGTACGTTCGTGTGCGCAGCACAAGTAGCGGAATCGAAAAGATCGTGGTGCCAATTTGTCTA

Fln Alignment:

sp_v1.1_unigene704___ELSLVFPIDIRSRLQPPLPSGYYGNGLSVSFAVARAGDLIEKPLSFAVKLISDAKRIVDDEYVRAQIDMLEAVGHTAPTLVGSFMANDHSKVDFAGVDFGWGKAEYGGVA---VAADPNESMYVRVRSTSSGIEKIVVPICL
B8LLR5_____________EVRLIFPLDARTRFDPPLPKGFYGNAISFACAKTTAGELAKNPLSFALKLINEAKTAVNDEYMRSVIDLMELEGRPHFTVVGSFLVSDVTKIGFGDVDFGWGRAAYGGPAKGGVGAVPGVSSFFIPLRNTSGVEGILVPVCL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
2	85			14	0.993533
28	42		57		1.0
175		11	88		0.923564
178	25		75		1.0
179	75	12		12	0.975346
182		16	83		0.994512
188	16		83		0.994512
190	66	33			1.0
191		33	66		1.0
192		16		66	0.988813
203	25		75		0.996473
310		28		71	1.0
312	20	80			0.995493
316	16			83	0.994512
317		16	83		0.994512
321	16	83			0.994512
322			83	16	0.994512
383		16	83		0.994512
384	83	16			0.994512
385		16		83	0.994512
386	16	83			0.994512
413	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain