SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene696

Length: 1450 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene696 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	unknown [Picea sitchensis]	-	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM9

Fln msg: your sequence is longer than subject: 281 - 197

Fln protein: MLWDEATNFSWVRLQFHILTKWTEKRSWNWLRPFLHIPLLMFNPGLLLHEQVVGSVGHIFGVEAPVLIFCYLHSKAGSVHFLSIMDGFDNEDEQAVSLQGSNAQLLDEVMHLQKNQTSQTSQQDLIDKLQVAYFGLINQNILLQEITFQLHATIKSSQDLVSQIHDELEEKNKCILSLQRLNRDLVRQVSELRGTEDIQEDCINTLQISSSSFASTTALVAMPEFHSPDNGDFELWARDNMLPEVTQSISQAVSSLSLGASSHSLMDSLVPSAPNFEQCT*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTTATTTCCTGTCAGTACTGGGAGCAAATTGTCTTTACATAATTGGATCGGTTCAGTTTTATGCTAATCTAGCACGTGACCGTCCTGGCTGGCTACGACGTGATCTCTCTTTTCAGTGCGCATTCAGAAGAGCACATGCTTGGCGCAATTATCTTAGCACATGCTAGGTGCAGTTCTTGATCTTGATGCATCTCCCTAGAGGCATAAGCTGTTTCAGAGCCTACGCAGCAAATCCTTCTTTCCACAGATCTGCAAGTGTAAGCAGTTTCAGCTTCTCTCCCTCTGGTGCCCTAGCTGCTACTCTATCAGGAAACTCTGCCCATGGAAAATTCTCTGGTTGGATTTGTATTTTTCATGATCTGATTGCAT_-_ATGTTATGGGATGAGGCAACAAACTTTAGTTGGGTGAGATTGCAATTTCATATTCTCACCAAATGGACAGAGAAAAGGTCTTGGAATTGGCTGAGGCCCTTCCTTCATATACCACTGTTGATGTTCAACCCTGGCCTGCTGCTGCATGAACAGGTTGTTGGATCTGTTGGGCATATCTTTGGTGTGGAGGCTCCAGTTCTGATATTTTGTTACCTGCATAGCAAAGCTGGTTCAGTGCACTTTTTGAGCATTATGGACGGCTTTGACAACGAAGATGAACAGGCTGTTTCTTTGCAAGGTTCCAATGCCCAACTTCTTGATGAAGTTATGCACCTGCAAAAAAATCAAACCAGTCAGACCAGTCAGCAAGATCTTATTGATAAGTTGCAAGTTGCTTATTTTGGTTTAATTAACCAAAACATTTTGTTACAGGAGATTACATTTCAACTTCATGCAACCATCAAGTCTTCCCAGGACCTTGTTTCCCAGATTCATGATGAATTGGAAGAGAAGAATAAGTGCATTCTGAGCTTGCAACGTCTCAACCGAGATCTTGTACGACAAGTGAGTGAACTCAGGGGTACTGAAGACATTCAAGAGGATTGCATCAATACATTACAAATATCGTCCTCTTCTTTTGCATCTACTACTGCACTGGTGGCCATGCCTGAATTTCATTCTCCTGACAATGGTGACTTTGAGCTCTGGGCAAGAGACAACATGTTGCCAGAGGTTACCCAGTCTATATCACAGGCAGTTTCTTCCCTTTCTTTGGGTGCATCTTCTCATTCTTTGATGGATTCTCTTGTACCATCAGCCCCCAATTTTGAGCAATGTACTTGA___ATCATTTGTTTCAAATTACTTCATTAAACGGGCTATATGGGTGGTAGGTGGGCTTTGTAATTATAAATATAGTATTATAATTTCTATGAGTGTGATGGATTAAAGCAAGTCTCTCATATGTTATATGTTGAGATTTGATCTTAAATATGTGGTTTTTTGTACTTGAAACACTGAGTTCAAATTACTTCATTAAATGGACTATATTGGTAGGG

Fln Alignment:

sp_v1.1_unigene696___MDGFDNEDEQAVSLQGSNAQLLDEVMHLQKNQTSQTSQQDLIDKLQVAYFGLINQNILLQEITFQLHATIKSSQDLVSQIHDELEEKNKCILSLQRLNRDLVRQVSELRGTED--IQEDCINTLQISSSSF----ASTTALVAMPEFHSPDNGDFELWARDNMLPEVTQSISQAVXXXXXXXXXXXLMDSLVPSAPNFEQCT
A9NVM9_____________MDGFDNEDEQVASFEGSNAQVLHEDVSVQK---VKVNQQDLIDQLQVAYFGLINQNILLQEITLQLHATIQSSQDLVSEMHHRLEEKDKCILGLRRFNLDLVRQVSELSGISEDCISEDCIRKLQISASSFASISASTPALVGAPKLYSPDNGDSKVRDTEDMLQEVTQPISQV--NPSFSSSSHVLMASLGPSLSNIQQCT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
594		14		85	0.993533
750		83		16	0.994512
909	37	62			1.0
910	62		37		1.0
919		37	62		1.0
920	37	62			1.0
924		62		37	1.0
928		37	62		1.0
931	37			62	1.0
932		37		62	1.0
974	20			80	0.995493
1250	80	20			0.995493
1251	80	20			0.995493
1252		20	80		0.995493
1254	80			20	0.995493
1273	66	33			0.997452
1274	66	33			0.997452
1275		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain