SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene693

Length: 3069 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene693
CGTCGTGACCTTGGCTGTCACTCACTTTTCGCCTTAGTTTTTCATGAGCTTTCCCCTGAAGTCCCCATAGCATATGCTGTGGGCTTCCGTTTCTGGGTTCATCTTAGGTTCTCTGAATATGCTGCCATATTTATCTGCCGGGAGCTCTCTACTTTCATCTGTTTCTTTACATTCTATTATCATCTCCCAGATTTCTAAATTGACTACAGTCCGAGGATCCTAAAACCTATTTTCACTTGATTCTAATCCTGGTAGGACTGTATAAAGGTTTTGAGTTTCTGAACTTTTGCGAAGGTTCGCGACTAATTGAAAGGAGTCGTGGGTTCTTGGGGAGGCTCGGCCGCGGCGACTTCGTGGTAAAGAGAATGGAAGTGGCTTTGGCATATGCAGAAGAAGCTCCACCCCTTTCCGTCTTTGCTACAGCAGCAGTTGCGGGTATATCGATAAATGCTGATCCCAAGCTTCCTTCGGGGTCACCACCAACATTCTCCTTTCCTTCTGGAGAAGAATTTCATGGAACCGGAATATTATTAAGATACCTTGGCCGCATTGCAAGTGTCCCTGACTTTTACAACCGTGATGCGTTTGCGACAGCTCAGATTGATGAATGGTTGGAATACGCCAATGTCTTCTCGGCTGGAGCTGAATTTGAAAAATCTTGTACTTATGTGGATAATTATCTGTCACTGCGGACTTTTGTGGTTGGGTATAGTTTATCTGTAGCTGATATAGCAGTTTGGTCTGGTCTAGCAGGCACTGGGCAAAGATGGGAAAGTATCTGTAAATCAAAGAAGTTTCAGAATCTAGTCCGGTGGTACAATTCAATATTGTCAGAATATCCAGTACTGAGTGAAGTAATTCAAAAATATGTAGGCAGACGAGGAATTGGCAAGCCGGGTTTGGTGAATAAGAAAGAGAATGATGGCACTGGGATCAAAGGTGAAAACAACGAAATAGAAAAAGCAGAGGGTTCCTTTGACATTGACCTGCCAGATGCTGAAATGGGAAACGTGTGTACACGTTTCCCTCCTGAGCCAAGTGGTTATCTCCATATTGGGCATGCAAAGGCTGCTCTTTTAAACCAATACTTTGCTCAGAGGTATAAAGGGCGCTTAATCATACGCTTTGATGACACGAATCCTGCTAAAGAGAGTAATGAATTTGTTGAGAATATTCTAAATGATTTGGATACACTCGGTATCAAAGGAGAAGGACCCACATATACTTCAGATTATTTTCCGCAGTTAATGGAGATGGCTGAGAAACTAATATCTGAGGGAAAGTCCTATGTAGATGACACACCCCGAGAGCAGATGCAGAAGGAGAGAATGGATGGAATTGAGTCAGTGAATAGGAATAATAGCGTGGAGCAAAATATGGCTTTGTGGAAAGAAATGGTTGCTGGGACTGAGAGGGGCAAGCAATGCTGTCTTAGAGGGAAGATGGATATGCAGGCTGCAAATAAGTCACTTAGGGATCCTGTTTATTATAGATGCAATCCTACATCTCATCATCGTGTTGGGTCCAAGTACAAAGTTTATCCAACGTATGACTTTGCATGCCCATATGTTGATAGTATTGAGGGTGTGACACATGCTCTTCGTTCAAGTGAATACCATGATCGCAATGAACAGTACTATCAAGTCTTACAGGATATGGGTTTGCGCAAGGTCCATGTATGGGATTTTAGTCGTTTAAATTTTGTTTACACACTTTTGAGCAAGCGAAAGTTACAATGGTTTGTAGATAACGGTAAAGTAGAGGGTTGGGATGATCCTCGGTTCCCAACAGTGCAAGGAATAATACGAAGAGGCTTGACTGTGGAGGCCTTGAAGCAGTTTATTCTCTCTCAAGGAGCATCGAAAAATCTCAACCTTATGGAGTGGGACAAGCTTTGGACAATAAATAAGAAAATTATTGATCCTATATGTCCAAGACACACTGCAGTTTTTCAAGAAGGTCGCGTGCTTTTGTGCTTAACAAATGGGCCTGAAGAACCTTTTGTTAGAATTGCACCCCGACATAAAAAGTATGAAGGAGCTGGAAAAAAAAGCAACTACTTACACAAAAGAAATCTGGCTGGATGGTGCTGATGCAGCTGCTGTCTCAGAAGGCGAAGAGGTAACACTGATGGATTGGGGCAATGCCATCATACAACATGTTGAAAAGGACAAGAATGGCACCATTATACATCTTAATGGAGTGCTGCATCTTGAAGGCTCCGTCAAAACAACAAAGTTAAAGCTTACCTGGCTTCCAAATATATCTGAGCTGGTGAATCTGTCTCTTGTTGAGCTTGATCATTTAATTACTAAAAAGAAGCTCGAGGAAACTGATAATTTTCTTGAAGTTCTCAATCCATGTACAAGATGGGAAAGTCTAGCTATAGGCGATGCAAATATGTGTAACCTAAAAAGAGGCGAGATTTTACAGCTGGAAAGGAAAGGATATTTCCGATGTGACGTGCCCTATTTGAGGCCATCAAAGCCTATAGTTCTGATTGCAATACCTGACGGTAGAAAGCAGTCTGTCTTGAAAAGGCCTTCCTCTTGACTGACTGTGTTTAATGGTGTCTGAAATGCAAATTGAGTAGTACTAAATTTTTATAGTTGCTTTACAGTGGTAGAGAGCTGGCTGTCTTGAAAGGGCCATTCTCTTGACTAAGGCATAATTGGTGTCAAACACATTAAGAGTTGGATTTTGTCATACTAACTGTAATTTATTGAAAGAATAGCATCTATTATTTTGGGCAATTGGGTGTAAATGAATTTGGTTAAGGTTGTGTGACTATTTTGTCTCCAAAGGCCCTAGAGAGTGTAGTTTTATTATTTCTTAGCTTGAGCTAAGAGAGTTGCACTGCTTGTATTTTGTAACTTAGATTGAATTCTGAATCTGGACACTTTGGTTGAACTCTACAGCAATTTGCAATCTTATTTGTGCCATTCGCAGCCAATGACAAGCATGCATGATATTAGGCATCTGTCCTACACTTGATTTGACCAAGTGACAAAGTGCTGTATTAACCATACAGCTTTCATATTGTTGACTAATATACATAGCAGAGGTAGC

Ace file of the UniGene sp_v1.1_unigene693

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA synthetase, cytoplasmic, putative n=1 Tax=Ricinus communis RepID=B9RFS6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	glutamyl-trna synthetase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-oxygen bonds, Ligases forming aminoacyl-tRNA and related compounds.	EC:6.1.1.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	81%
Blast2go	primary metabolic process	GO:0044238	Biological Process	81%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	81%
Blast2go	ligase activity, forming aminoacyl-tRNA and related compounds	GO:0016876	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Blast2go	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	81%
Blast2go	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	81%
Blast2go	Glutamyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic	IPR004526	-	81%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	81%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	81%
Blast2go	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	IPR020058	-	81%
Blast2go	Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain	IPR020061	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRU5

Fln msg: Overlapping hits, possible frame ERROR between 2054 and 1987,

Fln protein: MEVALAYAEEAPPLSVFATAAVAGISINADPKLPSGSPPTFSFPSGEEFHGTGILLRYLGRIASVPDFYNRDAFATAQIDEWLEYANVFSAGAEFEKSCTYVDNYLSLRTFVVGYSLSVADIAVWSGLAGTGQRWESICKSKKFQNLVRWYNSILSEYPVLSEVIQKYVGRRGIGKPGLVNKKENDGTGIKGENNEIEKAEGSFDIDLPDAEMGNVCTRFPPEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKLISEGKSYVDDTPREQMQKERMDGIESVNRNNSVEQNMALWKEMVAGTERGKQCCLRGKMDMQAANKSLRDPVYYRCNPTSHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYQVLQDMGLRKVHVWDFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIIRRGLTVEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPICPRHTAVFQEGRVLLCLTNxxxxxxxxxxxxxxxxxxxxxxxxTTYTKEIWLDGADAAAVSEGEEVTLMDWGNAIIQHVEKDKNGTIIHLNGVLHLEGSVKTTKLKLTWLPNISELVNLSLVELDHLITKKKLEETDNFLEVLNPCTRWESLAIGDANMCNLKRGEILQLERKGYFRCDVPYLRPSKPIVLIAIPDGRKQSVLKRPSS*

Protein Length: 731

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTCGCCTTAGTTTTTCATGAGCTTTCCCCTGAAGTCCCCATAGCATATGCTGTGGGCTTCCGTTTCTGGGTTCATCTTAGGTTCTCTGAATATGCTGCCATATTTATCTGCCGGGAGCTCTCTACTTTCATCTGTTTCTTTACATTCTATTATCATCTCCCAGATTTCTAAATTGACTACAGTCCGAGGATCCTAAAACCTATTTTCACTTGATTCTAATCCTGGTAGGACTGTATAAAGGTTTTGAGTTTCTGAACTTTTGCGAAGGTTCGCGACTAATTGAAAGGAGTCGTGGGTTCTTGGGGAGGCTCGGCCGCGGCGACTTCGTGGTAAAGAGA_-_ATGGAAGTGGCTTTGGCATATGCAGAAGAAGCTCCACCCCTTTCCGTCTTTGCTACAGCAGCAGTTGCGGGTATATCGATAAATGCTGATCCCAAGCTTCCTTCGGGGTCACCACCAACATTCTCCTTTCCTTCTGGAGAAGAATTTCATGGAACCGGAATATTATTAAGATACCTTGGCCGCATTGCAAGTGTCCCTGACTTTTACAACCGTGATGCGTTTGCGACAGCTCAGATTGATGAATGGTTGGAATACGCCAATGTCTTCTCGGCTGGAGCTGAATTTGAAAAATCTTGTACTTATGTGGATAATTATCTGTCACTGCGGACTTTTGTGGTTGGGTATAGTTTATCTGTAGCTGATATAGCAGTTTGGTCTGGTCTAGCAGGCACTGGGCAAAGATGGGAAAGTATCTGTAAATCAAAGAAGTTTCAGAATCTAGTCCGGTGGTACAATTCAATATTGTCAGAATATCCAGTACTGAGTGAAGTAATTCAAAAATATGTAGGCAGACGAGGAATTGGCAAGCCGGGTTTGGTGAATAAGAAAGAGAATGATGGCACTGGGATCAAAGGTGAAAACAACGAAATAGAAAAAGCAGAGGGTTCCTTTGACATTGACCTGCCAGATGCTGAAATGGGAAACGTGTGTACACGTTTCCCTCCTGAGCCAAGTGGTTATCTCCATATTGGGCATGCAAAGGCTGCTCTTTTAAACCAATACTTTGCTCAGAGGTATAAAGGGCGCTTAATCATACGCTTTGATGACACGAATCCTGCTAAAGAGAGTAATGAATTTGTTGAGAATATTCTAAATGATTTGGATACACTCGGTATCAAAGGAGAAGGACCCACATATACTTCAGATTATTTTCCGCAGTTAATGGAGATGGCTGAGAAACTAATATCTGAGGGAAAGTCCTATGTAGATGACACACCCCGAGAGCAGATGCAGAAGGAGAGAATGGATGGAATTGAGTCAGTGAATAGGAATAATAGCGTGGAGCAAAATATGGCTTTGTGGAAAGAAATGGTTGCTGGGACTGAGAGGGGCAAGCAATGCTGTCTTAGAGGGAAGATGGATATGCAGGCTGCAAATAAGTCACTTAGGGATCCTGTTTATTATAGATGCAATCCTACATCTCATCATCGTGTTGGGTCCAAGTACAAAGTTTATCCAACGTATGACTTTGCATGCCCATATGTTGATAGTATTGAGGGTGTGACACATGCTCTTCGTTCAAGTGAATACCATGATCGCAATGAACAGTACTATCAAGTCTTACAGGATATGGGTTTGCGCAAGGTCCATGTATGGGATTTTAGTCGTTTAAATTTTGTTTACACACTTTTGAGCAAGCGAAAGTTACAATGGTTTGTAGATAACGGTAAAGTAGAGGGTTGGGATGATCCTCGGTTCCCAACAGTGCAAGGAATAATACGAAGAGGCTTGACTGTGGAGGCCTTGAAGCAGTTTATTCTCTCTCAAGGAGCATCGAAAAATCTCAACCTTATGGAGTGGGACAAGCTTTGGACAATAAATAAGAAAATTATTGATCCTATATGTCCAAGACACACTGCAGTTTTTCAAGAAGGTCGCGTGCTTTTGTGCTTAACAAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTACTTACACAAAAGAAATCTGGCTGGATGGTGCTGATGCAGCTGCTGTCTCAGAAGGCGAAGAGGTAACACTGATGGATTGGGGCAATGCCATCATACAACATGTTGAAAAGGACAAGAATGGCACCATTATACATCTTAATGGAGTGCTGCATCTTGAAGGCTCCGTCAAAACAACAAAGTTAAAGCTTACCTGGCTTCCAAATATATCTGAGCTGGTGAATCTGTCTCTTGTTGAGCTTGATCATTTAATTACTAAAAAGAAGCTCGAGGAAACTGATAATTTTCTTGAAGTTCTCAATCCATGTACAAGATGGGAAAGTCTAGCTATAGGCGATGCAAATATGTGTAACCTAAAAAGAGGCGAGATTTTACAGCTGGAAAGGAAAGGATATTTCCGATGTGACGTGCCCTATTTGAGGCCATCAAAGCCTATAGTTCTGATTGCAATACCTGACGGTAGAAAGCAGTCTGTCTTGAAAAGGCCTTCCTCTTGA___CTGACTGTGTTTAATGGTGTCTGAAATGCAAATTGAGTAGTACTAAATTTTTATAGTTGCTTTACAGTGGTAGAGAGCTGGCTGTCTTGAAAGGGCCATTCTCTTGACTAAGGCATAATTGGTGTCAAACACATTAAGAGTTGGATTTTGTCATACTAACTGTAATTTATTGAAAGAATAGCATCTATTATTTTGGGCAATTGGGTGTAAATGAATTTGGTTAAGGTTGTGTGACTATTTTGTCTCCAAAGGCCCTAGAGAGTGTAGTTTTATTATTTCTTAGCTTGAGCTAAGAGAGTTGCACTGCTTGTATTTTGTAACTTAGATTGAATTCTGAATCTGGACACTTTGGTTGAACTCTACAGCAATTTGCAATCTTATTTGTGCCATTCGCAGCCAATGACAAGCATGCATGATATTAGGCATCTGTCCTACACTTGATTTGACCAAGTGACAAAGTGCTGTATTAACCATACAGCTTTCATATTGTTGACTAATATACATAGCAGAGGTAGC

Fln Alignment:

sp_v1.1_unigene693___MEVALAYAEEAPPLSVFATAAVAGISINADPKLXXXXXXXXXXXXXEEFHGTGILLRYLGRIASVPDFYNRDAFATAQIDEWLEYANVFSAGAEFEKSCTYVDNYLSLRTFVVGYSLSVADIAVWSGLAGTGQRWESICKSKKFQNLVRWYNSILSEYPVLSEVIQKYVGRRGIGKPGLVNKKENDGTGIKGENNEIEKAEGSFDIDLPDAEMGNVCTRFPPEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKLISEGKSYVDDTPREQMQKERMDGIESVNRNNSVEQNMALWKEMVAGTERGKQCCLRGKMDMQAANKSLRDPVYYRCNPTSHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYQVLQDMGLRKVHVWDFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIIRRGLTVEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPICPRHTAVFQEGRVLLCLTNxxxxxxxxxxxxxxxxxxxxxxxTTYTKEIWLDGADAAAVSEGEEVTLMDWGNAIIQHVEKDKNGTIIHLNGVLHLEGSVKTTKLKLTWLPNISELVNLSLVELDHLITKKKLEETDNFLEVLNPCTRWESLAIGDANMCNLKRGEILQLERKGYFRCDVPYLRPSKPIVLIAIPDGRKQSVLKRPSS
B8LRU5_____________MEVALAYTEEAPPLSIFVTAAVAGISIKADPKLPSGSLPTFCFPSGEELHGTGILLRYLGRIASVPDFYNRDAFATAQIDEWVEYATVFSAGAEFEKSCTYVDNHLSLRTFLVGYSLSVADIAVWSGLAGTGQRWESIRKSKKFQNLVRWFNSILSEYSVLSEVIQKYVGRRGIGKPGLVNRKENDGTGIKGENNEIEKAEGSFDIDLPDAEMGNVCTRFPPEPSGYLHIGHAKAALLNQYFAQRYKGRLIIRFDDTNPAKESNEFVENILNDLDTLGIKGEGPTYTSDYFPQLMEMAEKMISEGKSYIDDTPREQMQKERMDGIESVNRNNTVEQNMALWKEMVAGTERGKQCCLRAKMDMQAANKSLRDPVYYRCNPISHHRVGSKYKVYPTYDFACPYVDSIEGVTHALRSSEYHDRNEQYYRVLQDMGLRKVHVWDFSRLNFVYTLLSKRKLQWFVDNSKVEGWDDPRFPTVQGIIRRGLTVEALKQFILSQGASKNLNLMEWDKLWTMNKKIIDPICPRHTAVLQEGRVLLCLTNxxxxxxxxxxxxxxxxxxxxxxxTTYTKEIWLDGADAAAVSEGEEVTLMDWGNAIIKHVEKDKNGTIIRLSGVLHLEGSVKTTKLKLTWLPDISELVNLSLVELDHLITKKKLEETDNFLEVLNPCTRWEGLAIGDANMRNLKRGEILQLERKGYFRCDVPYLRPSKPIVLIAIPDGRKQSVLKRPSS

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
415		22		77	0.999999
419			11	88	0.923564
421			11	88	0.923564
422	11		88		0.923564
424		11		88	0.923564
425	88			11	0.923564
426		88		11	0.923564
427	77		11	11	0.968132
430	88			11	0.923564
434		11	88		0.923564
436		44		55	1.0
438	12	87			0.992554
447		87		12	0.992554
474		83		16	0.994512
530	75			25	0.996473
532	75	25			0.996473
533			25	75	0.996473
534		25		75	0.996473
536			25	75	0.996473
538	75		25		0.996473
541	75			25	0.996473
542			25	75	0.996473
547	25			75	0.996473
587			66	33	0.997452
589			66	33	0.997452
590		33		66	0.997452
672	66		33		0.997452
785		42		57	1.0
896	83		16		0.994512
904			40	60	1.0
916	25		75		0.996473
931		80		20	0.995493
955		75		25	0.996473
1144		75		25	0.996473
1655		25	75		0.996473
1827		20		80	0.995493
1909	83		16		0.994512
2141	20			80	0.995493
2143			40	20	1.0
2180			88	11	0.923564
2181	88		11		0.923564
2182	88		11		0.923564
2183			11	88	0.923564
2201		12		87	0.992554
2256	12			87	0.992554
2314	33			66	1.0
2409		75		25	0.996473
2415		83	16		0.994512
2456	16			83	0.994512
2530	80	20			0.995493
2536		20		80	0.995493
2541	80		20		0.995493
2542	80	20			0.995493
2543	80			20	0.995493
2544	80		20		0.995493
2545			20	80	0.995493
2546	20		80		0.995493
2669	80	20			0.995493
2671			80	20	0.995493
2673	80		20		0.995493
2675	80		20		0.995493
2678		20		80	0.995493
2679		20	80		0.995493
2680			80	20	0.995493
2683			20	80	0.995493
2685	80			20	0.995493
2686	80		20		0.995493
2687	80			20	0.995493
2693		20		80	0.995493
2755	40		60		1.0
2811	33		66		1.0
2818	80		20		0.995493
2845		75		25	0.996473
2846			25	75	0.996473
2866	25			75	0.996473
2876	16			83	0.994512
2879			16	83	0.994512
2880	83		16		0.994512
2883	23			76	1.0
2889		30		69	1.0
2908		66		25	1.0
2922		10		90	0.90298
2953		25		75	0.996473
2954			25	75	0.996473
2956	25			75	0.996473
2957			25	75	0.996473
2958		75		25	0.996473
2959		50	25	25	0.995533
2961	75		25		0.996473
2963			25	75	0.996473
2964	25			75	0.996473
2965		25	75		0.996473
2966	25			75	0.996473
2967	75		25		0.996473
2968			25	75	0.996473
2969		25	75		0.996473
2970	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain