SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene692

Length: 2649 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene692
GCGGTATATAAAGGAGGCCACTGATACGCCATGGGGAATTAAACACTGGCAATCGCCTGCGTCTGCTTCAATTGAAGCTTTTCTGCTCGCCAATCAATATGGCAATTGCAAGCAGGGCAGGAGTTGCACCCATCCTTCAAGTAGACTGTCATTTCACCCATTTCAATTCAATGACTGAATTGGGTTCTCGGAATAGTACGATGTTTCAGTCTGCAATTCCCTGCTCATTTCGACAGATTAGGGCGACCACTAAAAGAAAGCGTTGTGTCTTGTTTGCTAAGCTAAGTAATTCCGATGGAGAAAAGGGGAAAAATGTGAAGGCAGCTGTGGAGATTGCTTCAAAGAGTGGATTCCCAGCTGAGAAACCTCCTACACCGTTGCTCGACACCGTTAATTATCCAGTACACTTAAAGAATCTCTCTATACAGGATCTAGAGCAACTGGCCGCAGAAATTAGAGCAGAACTTGTGTTCGGTGTGGCAAAAACTGGAGGCCACCTGGGAGGTAGCCTGGGTGTGGTAGATCTAACAGTGGCTCTTCACCATGTCTTTGATTCTCCAGAGGATAAGATTATATGGGATGTTGGTCACCAGTCATATCCACACAAGATTTTGACAGGGAGAAGATCCAAAATGCATACAATCAGACAGACCTCTGGTTTGGCCGGATTTCCCAAACGGGACGAAAGCAAATACGATGCTTTTGGCGCTGGACATAGTTCTACCAGTATCTCCGCTGGACTCGGTATGGCAGTTGGGAGAGATTTACTGAAGAAAAAAAACCATGTGGTGGCCGTGATTGGGGATGGAGCCATGACAGCAGGACAAGCTTACGAGGCTATGAATAATTCAGGATATCTGGAATCCAATCTTATCATAATTCTTAATGATAATAAGCAAGTTTCGCGTGCCAACTGCCACACTAGACGGAGCTGCGCCGCCCGTAGGAGCACTTACCAGGGCTCTCACAAAGCTCCAGTCCAGCAAAAAACTTCGCAAACTCAGAGAAGCCGCCAAGGGTCTCACGAAGCAGATAGGTGGGCCAACTCATGAAGTGGCATCGAAAGTTGATAAGTATGCAAGGGGTCTTATCAGCCCAGCAGGTTCCTCGTTATTTGACGAGCTAGGTCTTTATTACATTGGACCTGTGGATGGGCACAACATTGAAGACATGGTGACAATTTTAGAGAAGATTAAAAGCATGCCGGCTACGGGACCCGTACTGATTCACTTGGTGACAGAGAAAGGAAAGGGTTACCCTCCAGCGGAGGAAGCTGCAGACAAATTACATGGTGTGGTGAAGTTCGATCCAGTTACGGGCAAACAATTCAAGTCAAAAAGTTCCGTTCTGAGCTATACACAGTACTTTGCAGAAGCTCTGATAGCAGAAGCGGAAGTAGACAGCAAAATTGTGGGTATTCATGCTGCCATGGGCGGAGGCACAGGACTTAATTATTTCCAAAAGAAGTTCCCAGAACGCTGCTTCGACGTAGGAATAGCAGAACAACACGCGGTCACATTTGCTGCAGGCCTAGCTACAGAAGGCCTGAAACCTTTCTGTGCAATTTATTCTACTTTCCTGCAACGCGGTTATGATCAGGTAGTTCACGATGTGGATCTGCAAAAGCTGCCGGTGCGTTTTGCAATGGATAGGGCCGGACTGGTTGGGGCAGACGGTCCTACTCATTGTGGTTCTTTTGATGTGGCCTATATGGCCTGCCTGCCCAACATGATTGTAATGGCTCCGTCAGACGAGGTAGAACTGATGCACATAGTTGCAACCGCTGCAGCAATTGACGATCGACCCAGCTGTTTCAGGTTCCCTAGGGGCAACGGAGTAGGGTTGTCAAATTTGCCCCTAAATAACAAGGGTGTTCCACTTGAGATTGGCAAAGGTCGCATTCTGGTAGAAGGCACCCGAGTTGCGATTCTAGGGTTTGGTACGATTATACAGAATTGTCTTGCAGCTGGAAAAATCCTAAATGAACAAGCTGGCATATCAGTCACCATTGCAGATGCTCGTTTCTGCAAGCCTTTGGATGGAGATTTGATCAAACGGTTGGCTAAAGAGCACGAGATCCTATTGACTGTGGAGGAAGGATCCATTGGGGGTTTTGGATCCCATGTCTCCCATTTCCTGGCTTTGAACGGGCTACTTGATGGGAAGCTTAAGTGGAGGGCAATGGTGTTACCAGATAGATACATTGATCATGGAGCTCCCAAAGATCAAATCGAAGAAGCAGGTTTGACTCCAGAGCATATTGCAGCTACCATAATGTCCCTCCTGGGCAAGCCTCATGATGCTCTTCTGAAGCACCGATAAATGCATCATGTTTTAAGGGGACAAGCGTAGATTTTGCTTATCCTATCAATAAGGCTATGCAGCAAGTTGGAAGACTCTGGTCAGCCATGAGACCCTTTATCTGTCAAATGTAAATCTGTTTACAGTTTCTAATAATAAAGAAGATAATATCTTGTTTTAAGAGCATTTAGCGTTGACAATACACTGATTAAGAAAATTCACACGTTTAGTCGTGTGTAGCAATATGTAAATGTCAACGAAGAAGCAAAACTCACACGGTTTAGTCGTGTGTAGCCATATGTAAATATCAGTAACAAATAATTAATAGAGTGATTAAATAAATATTAT

Ace file of the UniGene sp_v1.1_unigene692

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type II n=3 Tax=Pinaceae RepID=A7LA01_PICAB	-	-	92%
FL-Next	tr=Putative 1-D-deoxyxylulose 5-phosphate synthase type 2; Pinus densiflora (Japanese red pine).	-	-	97%
Blast2go	1-deoxy-d-xylulose 5-phosphate synthase	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	92%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Transketolase-like, pyrimidine-binding domain	IPR005475	-	92%
Blast2go	Transketolase, C-terminal	IPR005476	-	92%
Blast2go	Deoxyxylulose-5-phosphate synthase	IPR005477	-	92%
Blast2go	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	IPR009014	-	92%
Blast2go	Transketolase-like, C-terminal	IPR015941	-	92%
Blast2go	Transketolase binding site	IPR020826	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B9U4U0

Fln msg: Separated hits, possible frame ERROR between 905 and 907,

Fln protein: MAIASRAGVAPILQVDCHFTHFNSMTELGSRNSTMFQSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEIASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLAAEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVxxVPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNYFQKKFPERCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPSCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR*

Protein Length: 743

Fln nts: GCGGTATATAAAGGAGGCCACTGATACGCCATGGGGAATTAAACACTGGCAATCGCCTGCGTCTGCTTCAATTGAAGCTTTTCTGCTCGCCAATCAAT_-_ATGGCAATTGCAAGCAGGGCAGGAGTTGCACCCATCCTTCAAGTAGACTGTCATTTCACCCATTTCAATTCAATGACTGAATTGGGTTCTCGGAATAGTACGATGTTTCAGTCTGCAATTCCCTGCTCATTTCGACAGATTAGGGCGACCACTAAAAGAAAGCGTTGTGTCTTGTTTGCTAAGCTAAGTAATTCCGATGGAGAAAAGGGGAAAAATGTGAAGGCAGCTGTGGAGATTGCTTCAAAGAGTGGATTCCCAGCTGAGAAACCTCCTACACCGTTGCTCGACACCGTTAATTATCCAGTACACTTAAAGAATCTCTCTATACAGGATCTAGAGCAACTGGCCGCAGAAATTAGAGCAGAACTTGTGTTCGGTGTGGCAAAAACTGGAGGCCACCTGGGAGGTAGCCTGGGTGTGGTAGATCTAACAGTGGCTCTTCACCATGTCTTTGATTCTCCAGAGGATAAGATTATATGGGATGTTGGTCACCAGTCATATCCACACAAGATTTTGACAGGGAGAAGATCCAAAATGCATACAATCAGACAGACCTCTGGTTTGGCCGGATTTCCCAAACGGGACGAAAGCAAATACGATGCTTTTGGCGCTGGACATAGTTCTACCAGTATCTCCGCTGGACTCGGTATGGCAGTTGGGAGAGATTTACTGAAGAAAAAAAACCATGTGGTGGCCGTGATTGGGGATGGAGCCATGACAGCAGGACAAGCTTACGAGGCTATGAATAATTCAGGATATCTGGAATCCAATCTTATCATAATTCTTAATGATAATAAGCAAGTTTCxxxCGTGCCAACTGCCACACTAGACGGAGCTGCGCCGCCCGTAGGAGCACTTACCAGGGCTCTCACAAAGCTCCAGTCCAGCAAAAAACTTCGCAAACTCAGAGAAGCCGCCAAGGGTCTCACGAAGCAGATAGGTGGGCCAACTCATGAAGTGGCATCGAAAGTTGATAAGTATGCAAGGGGTCTTATCAGCCCAGCAGGTTCCTCGTTATTTGACGAGCTAGGTCTTTATTACATTGGACCTGTGGATGGGCACAACATTGAAGACATGGTGACAATTTTAGAGAAGATTAAAAGCATGCCGGCTACGGGACCCGTACTGATTCACTTGGTGACAGAGAAAGGAAAGGGTTACCCTCCAGCGGAGGAAGCTGCAGACAAATTACATGGTGTGGTGAAGTTCGATCCAGTTACGGGCAAACAATTCAAGTCAAAAAGTTCCGTTCTGAGCTATACACAGTACTTTGCAGAAGCTCTGATAGCAGAAGCGGAAGTAGACAGCAAAATTGTGGGTATTCATGCTGCCATGGGCGGAGGCACAGGACTTAATTATTTCCAAAAGAAGTTCCCAGAACGCTGCTTCGACGTAGGAATAGCAGAACAACACGCGGTCACATTTGCTGCAGGCCTAGCTACAGAAGGCCTGAAACCTTTCTGTGCAATTTATTCTACTTTCCTGCAACGCGGTTATGATCAGGTAGTTCACGATGTGGATCTGCAAAAGCTGCCGGTGCGTTTTGCAATGGATAGGGCCGGACTGGTTGGGGCAGACGGTCCTACTCATTGTGGTTCTTTTGATGTGGCCTATATGGCCTGCCTGCCCAACATGATTGTAATGGCTCCGTCAGACGAGGTAGAACTGATGCACATAGTTGCAACCGCTGCAGCAATTGACGATCGACCCAGCTGTTTCAGGTTCCCTAGGGGCAACGGAGTAGGGTTGTCAAATTTGCCCCTAAATAACAAGGGTGTTCCACTTGAGATTGGCAAAGGTCGCATTCTGGTAGAAGGCACCCGAGTTGCGATTCTAGGGTTTGGTACGATTATACAGAATTGTCTTGCAGCTGGAAAAATCCTAAATGAACAAGCTGGCATATCAGTCACCATTGCAGATGCTCGTTTCTGCAAGCCTTTGGATGGAGATTTGATCAAACGGTTGGCTAAAGAGCACGAGATCCTATTGACTGTGGAGGAAGGATCCATTGGGGGTTTTGGATCCCATGTCTCCCATTTCCTGGCTTTGAACGGGCTACTTGATGGGAAGCTTAAGTGGAGGGCAATGGTGTTACCAGATAGATACATTGATCATGGAGCTCCCAAAGATCAAATCGAAGAAGCAGGTTTGACTCCAGAGCATATTGCAGCTACCATAATGTCCCTCCTGGGCAAGCCTCATGATGCTCTTCTGAAGCACCGATAA___ATGCATCATGTTTTAAGGGGACAAGCGTAGATTTTGCTTATCCTATCAATAAGGCTATGCAGCAAGTTGGAAGACTCTGGTCAGCCATGAGACCCTTTATCTGTCAAATGTAAATCTGTTTACAGTTTCTAATAATAAAGAAGATAATATCTTGTTTTAAGAGCATTTAGCGTTGACAATACACTGATTAAGAAAATTCACACGTTTAGTCGTGTGTAGCAATATGTAAATGTCAACGAAGAAGCAAAACTCACACGGTTTAGTCGTGTGTAGCCATATGTAAATATCAGTAACAAATAATTAATAGAGTGATTAAATAAATATTAT

Fln Alignment:

sp_v1.1_unigene692___MAIASRAGVAPILQVDCHFTHFNSMTELGSRNSTMFQSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEIASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLAAEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSxVPTATLDGAAPPVGALTRAXXXXXXXXXXXXXXEAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNYFQKKFPERCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPSCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR
B9U4U0_____________MAIASRAGVAPILQVDCPFTHFNSMTELGSRNSMLFLSAIPCSFRQIRATTKRKRCVLFAKLSNSDGEKGKNVKAAVEVASKSGFPAEKPPTPLLDTVNYPVHLKNLSIQDLEQLATEIRAELVFGVAKTGGHLGGSLGVVDLTVALHHVFDSPEDKIIWDVGHQSYPHKILTGRRSKMHTIRQTSGLAGFPKRDESKYDAFGAGHSSTSISAGLGMAVGRDLLKKKNHVVAVIGDGAMTAGQAYEAMNNSGYLESNLIIILNDNKQVSxLPTATLDGAAPPVGALTRALTKLQSSKKLRKLREAAKGLTKQIGGPTHEVASKVDKYARGLISPAGSSLFDELGLYYIGPVDGHNIEDMVTILEKIKSMPATGPVLIHLVTEKGKGYPPAEEAADKLHGVVKFDPVTGKQFKSKSSVLSYTQYFAEALIAEAEVDSKIVGIHAAMGGGTGLNFFQKKFPERCLDVGIAEQHAVTFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVAYMACLPNMIVMAPSDEVELMHIVATAAAIDDRPCCFRFPRGNGVGLSNLPLNNKGVPLEIGKGRILVEGTRVAILGFGTIIQNCLAAGKILNEQAGISVTIADARFCKPLDGDLIKRLAKEHEILLTVEEGSIGGFGSHVSHFLALNGLLDGKLKWRAMVLPDRYIDHGAPKDQIEEAGLTPEHIAATIMSLLGKPHDALLKHR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
89	25	75			0.996473
153	25			75	0.996473
199	75		25		0.996473
314	66			33	0.997452
315	33			66	0.997452
479		14		85	0.993533
1114	83		16		0.994512
1222	10		90		0.90298
2209		10		90	1.0
2215	90		3		0.997952
2415	88		3	7	0.999079
2489	18			81	0.999994
2490	18			81	0.999994
2491	18			81	0.999994
2493	18		81		0.999994
2494	10	90			0.90298
2504	71		28		1.0
2507		85	14		0.993533
2527	20		80		0.995493
2548			20	80	0.995493
2627	75		25		0.996473
2632			75	25	0.996473
2633	25			75	0.996473
2636	25			75	0.996473
2644	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain