SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene688

Length: 1517 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene688

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homogentisate phytyltransferase VTE2-2 n=3 Tax=Arabidopsis RepID=Q1ACB3_ARATH	-	-	74%
FL-Next	sp=Homogentisate phytyltransferase 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	homogentisate farnesyltransferase homogentisate geranylgeranyltransferase homogentisate solanesyltransferase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	81%
Blast2go	plastoquinone biosynthetic process	GO:0010236	Biological Process	81%
Blast2go	homogentisate geranylgeranyltransferase activity	GO:0010356	Molecular Function	81%
Blast2go	homogentisate farnesyltransferase activity	GO:0010355	Molecular Function	81%
Blast2go	homogentisate solanesyltransferase activity	GO:0010357	Molecular Function	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UbiA prenyltransferase family	IPR000537	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q1ACB3

Fln msg:

Fln protein: MGVVTLAVTQFSMALHSCTSPLYTNFPRGQSSIPLHYNKISFNADDALNLYKNRTNLRDKGRHAILSLGVSPLSRRSFFTSKKFKEANKARGTIRADATIGTAEPEPLSRRFSQFTDAFWRFLRPHTIRGTVLGSIALVSRALIENSHLINWWLLPKALCGLTALLCGNGYIVGINQIYDIGIDKVNKPFLPIAAGDLSVTEAWFLVLLFAAVGVAIVGLNFGPFISALYCLGLFLGTIYSVPPFRLKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLKFQWSPSVVFITMFVTLFAMVIAITKDLPDVEGDRKFQIATLATNLGVRNIAFLGSGLLLANYVGAILAAVYMPQTFRGSLMVLGHAILVLFLGFQTWILDHSLYTKEAIAKYYRFIWNLFYTEYLMFPFL*

Protein Length: 413

Fln nts: _-_ATGGGCGTCGTGACCTTGGCTGTCACTCAATTCTCAATGGCTCTGCACTCCTGTACTTCTCCTCTGTACACCAATTTTCCACGCGGGCAATCTTCAATCCCTCTCCATTATAACAAAATCTCCTTCAATGCCGATGATGCCTTGAATTTGTATAAAAACAGGACGAATCTCCGAGATAAGGGCAGACATGCGATTTTAAGCTTGGGAGTCTCGCCATTGTCCAGGAGGTCCTTCTTCACCAGCAAAAAATTCAAGGAGGCAAACAAAGCTCGTGGGACGATCCGGGCTGATGCAACTATTGGTACTGCTGAGCCAGAGCCACTTTCAAGGAGATTCTCCCAGTTTACAGATGCATTCTGGAGGTTTTTGAGGCCGCACACAATTCGTGGAACTGTACTTGGCTCAATAGCTTTGGTGTCACGAGCTCTGATCGAGAATTCTCATCTTATTAATTGGTGGCTATTACCTAAGGCCTTGTGTGGACTTACTGCATTACTATGTGGAAATGGTTACATTGTTGGAATCAACCAGATATATGATATTGGAATTGACAAGGTGAACAAGCCTTTTCTACCTATAGCTGCAGGAGATCTTTCAGTTACGGAAGCTTGGTTTCTAGTATTACTTTTTGCAGCTGTGGGAGTTGCAATTGTTGGATTAAATTTTGGTCCTTTCATTTCAGCCCTTTACTGTCTTGGGCTTTTTCTGGGGACAATCTATTCTGTGCCACCATTTAGGCTAAAGAGGTTTCCAGTTGCAGCATTTTTAATTATTGCCACGGTTCGAGGTTTCCTGCTCAATTTTGGGGTATATTATGCAACTAGAGCTGCGCTTGGTCTTAAATTTCAATGGAGCCCTTCAGTGGTTTTTATCACAATGTTTGTGACATTGTTTGCCATGGTCATTGCCATAACCAAAGATCTTCCTGATGTAGAAGGCGACCGCAAATTTCAAATAGCCACATTGGCAACCAACCTTGGTGTCCGAAATATTGCATTTCTAGGTTCAGGACTTCTGCTTGCAAACTATGTGGGTGCAATACTCGCTGCAGTATATATGCCACAGACATTTCGAGGTAGCTTAATGGTCCTCGGGCATGCCATCTTAGTATTGTTCTTGGGTTTCCAGACATGGATTTTGGACCATTCGCTTTACACAAAGGAAGCCATTGCAAAATATTATCGATTTATTTGGAATCTTTTCTATACAGAGTATTTGATGTTTCCTTTTCTTTAG___CCAACACATCATGTTTGTATGTGTTTTTTGTTTCATTGTAATAATTAAAGTCTTGAAATAAATATGTAAAACAAAATTTGTATTTTAGTGTTCGTGCTTATCAATATGAGTAAGTGGAATTTTCATTTAAAAAATGAACAGAAAGTTTTATTGAAGTGGAATTTTCATTTAAAAAATGAACAGAAAGTTTTATTGAAGTGGCATTTTGACGATATTGTATTCTCTTGGTATACATTTGCTATTCTATTAATATAACATATAAATCCACATCCAATTAAGTT

Fln Alignment:

sp_v1.1_unigene688___KFKEANKARGTIRADATIGTAEPE-PLSRRFSQFTDAFWRFLRPHTIRGTVLGSIALVSRALIENSHLINWWLLPKALCGLTALLCGNGYIVGINQIYDIGIDKVNKPFLPIAAGDLSVTEAWFLVLLFAAVGVAIVGLNFGPFISALYCLGLFLGTIYSVPPFRLKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLKFQWSPSVVFITMFVTLFAMVIAITKDLPDVEGDRKFQIATLATNLGVRNIAFLGSGLLLANYVGAILAAVYMPQTFRGSLMVLGHAILVLFLGFQTWILDHSLYTKEAIAKYYRFIWNLFYTEYLMFPFL
Q1ACB3_____________KFVSTNYRKISIRACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
404	25	75			0.996473
406		75	25		0.996473
407	75		25		0.996473
408	75		25		0.996473
506	75		25		0.996473
689	14			85	0.993533
690			14	85	0.993533
691	71		28		1.0
692		85	14		0.993533
697	14			85	0.993533
698		14		85	0.993533
699			85	14	0.993533
700		14	85		0.993533
702	14	85			0.993533
750	16			83	0.994512
752			16	83	0.994512
753		83	16		0.994512
754		83	16		0.994512
880	90	10			0.90298
882	10		90		0.90298
887			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain