SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene687

Length: 1645 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative arogenate dehydratase n=1 Tax=Capsicum annuum RepID=B5LAT0_CAPAN	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	arogenate prephenate dehydratase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	72%
Blast2go	Biosynthesis of phenylpropanoids	01061	72%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	72%
Blast2go	Biosynthesis of plant hormones	01070	72%
Blast2go	Metabolic pathways	01100	72%
Blast2go	Biosynthesis of secondary metabolites	01110	72%

Source	GOs	Term	Type	Identity
Blast2go	tyrosine biosynthetic process	GO:0006571	Biological Process	72%
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	72%
Blast2go	response to low fluence blue light stimulus by blue low-fluence system	GO:0010244	Biological Process	72%
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	72%
Blast2go	cytosol	GO:0005829	Cellular Component	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMZ1

Fln msg: your sequence is shorter than subject: 310 - 389

Fln protein: KKVRVAYQGIPGAFSEAAATTAHPGCEGVPCKGYEDAIWAVESRKADRAILPVEGTLEGNAVRNYDLLLHHSLYIVEEIRLFVNYCLLVAPGVRKEQVRRVMSHPMALAHCSHGLKKLGLDVVTREAVDDTAGAAEFVHSRGLRDTAAIASCRAAEIYGLDVVARNVQDEPWNVTRFLVLARQPYTDDDNVGVGAVVGVDRAWKTSIVIAHEGGLDVLLKLLSVFSFHNISLTKLEVNPQGSAPLRVLDIDAKGGAAVRQFEYVFYIDFEASEADPHAQRALEEVRRFATFVRVLGCYVSRPKIHTLDP*

Protein Length: 311

Fln nts: GGAAGAAGGTGAGGGTAGCGTATCAGGGGATTCCCGGGGCTTTCAGTGAGGCGGCAGCAACGACGGCCCACCCTGGTTGCGAGGGGGTGCCTTGCAAGGGCTATGAGGATGCTATCTGGGCCGTGGAGTCCCGCAAGGCGGATCGGGCCATATTGCCAGTAGAGGGCACCCTGGAGGGCAACGCGGTTCGAAACTACGACCTGTTGCTTCACCACAGCCTGTACATCGTGGAGGAGATTCGGCTCTTCGTTAACTATTGCCTGCTGGTGGCGCCCGGTGTTCGGAAGGAGCAAGTGCGCCGCGTGATGAGCCATCCAATGGCGTTGGCGCACTGCAGCCACGGTCTCAAAAAGCTAGGGCTCGATGTGGTCACCCGTGAGGCCGTCGATGACACTGCCGGTGCTGCGGAGTTCGTGCACTCCCGTGGCCTTAGGGACACTGCTGCCATCGCCAGCTGCAGGGCCGCTGAAATCTACGGCCTCGACGTTGTGGCCCGCAATGTGCAGGACGAGCCCTGGAATGTGACTCGGTTCCTGGTGCTCGCCAGGCAACCCTATACGGACGACGACAACGTTGGGGTCGGCGCCGTTGTTGGCGTTGACCGCGCCTGGAAGACGAGCATCGTGATTGCACACGAAGGAGGTTTGGATGTACTTCTGAAATTGCTTTCCGTGTTCTCCTTCCACAACATCAGTCTGACGAAATTGGAGGTGAATCCGCAAGGTAGCGCTCCTCTCAGAGTTCTCGACATCGATGCCAAGGGCGGTGCCGCCGTAAGGCAGTTCGAGTACGTTTTCTATATAGATTTTGAAGCTTCCGAGGCAGACCCTCATGCCCAACGGGCCCTTGAAGAGGTAAGACGCTTCGCCACTTTTGTCCGGGTGCTAGGATGCTACGTTTCCCGCCCCAAAATCCACACCCTTGACCCTTGA___TTAGATGAATATCGTCAGTTGTATCAGAGGTATCGGTGTCATGCCAAGCATGCTCTTTCTTGTTGAGGTTGTTATCTATGTGATTTATTACAGGCAGTAGGCTGAAGGGTTGTTATTTACCTGCTGTGTGGTATTTCTCTGGTTTGTATAATTATTATTAGTAGTATAGTTTTATCTTAATCAAGGATCTAGCCAACGCCAGGCAAAAAAGATTTGGATCCAAATATTACAAGCTATTATTATCCTAAAAATGGATTTGCATCCAAAGAAATAATTACCTTACGCTCTGCTTCGCTCTTTACTTCGCTCGTTATCTGGGATTTGGATCCAAATAAATAATTACCTCACTCAACTTCACTCTTTCTTTTTGGTATCCAGGTCTTAGACCTCCCACCCCTTTTTCTGTGCATGTATGCATTTGAATGTGTTGATCATTTGCTTACAGCACCTATAGTTATGCCCTTTTGGGTATTCAAGTTCATATTCATCTCGAGAGAACATGACATTGTATTTCGTACATTTGGGTAGAAAATATTGATGACTCGCTTACGAGTCATGATACTCTGTCTATGGACGTGTGAGATTTTCAGATCAATTTAATGATTTTAGAGCCTGCACAAGCACATTTGCTCGATCAGTTGTTGGACTTTTACATGGATGTTCTGAATGTTTATGATTATGAGTTTACATCAATGTTCTTTGAGATATCTGTC

Fln Alignment:

sp_v1.1_unigene687___KKVRVAYQGIPGAFSEAAATTAHPGCEGVPCKGYEDAIWAVESRKADRAILPVEGTLEGNAVRNYDLLLHHSLYIVEEIRLFVNYCLLVAPGVRKEQVRRVMSHPMALAHCSHGLKKLGLDVVTREAVDDTAGAAEFVHSRGLRDTAAIASCRAAEIYGLDVVARNVQDEPWNVTRFLVLARQPYTXXXXXXXXXXXXXXRAWKTSIVIAHEGGLDVLLKLLSVFSFHNISLTKLEVNPQGSAPLRVLDIDAKGGAAVRQFEYVFYIDFEASEADPHAQRALEEVRRFATFVRVLGCYVSRPKIHTLDP
B8LMZ1_____________KKVRVAYQGIPGAFSEAAATTAHPGCEGVPCKGYEDAIWAVESRKADRAILPVEGTLEGNAVRNYDLLLHHSLHIVEEIRLFVNYCLLVAPGVRKEQVRRVMSHPMALAHCSHGLKKLGLDVVTREAVDDTAGAAEFVHSRGLRDTAAIASCRAAEIYGLDVVARGVQDEPWNVTRFLVLARQPYTDEDNVGVGAVVGVNRAWKTSIVIAHEGGLEVLLKLLSVFSFHNISLTKLEVNPQGNAPLRVLDIDAKGGAAVRQFEYVFYIDFEASEADPHAQRALEEVRRFATFVRVLGCYVARPKIHTLDP

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
152	75		25		0.996473
153			25	75	0.996473
154			25	75	0.996473
179		75		25	0.996473
204	20			80	0.995493
208			20	80	0.995493
209			20	80	0.995493
264	16	66		16	0.988813
428		87		12	0.992554
478	10		90		0.90298
542		77	22		0.999999
555		11		88	0.923564
573	12		87		0.992554
575			12	87	0.992554
613	85		14		0.993533
632	75		12	12	0.975346
634	87		12		0.992554
635		87		12	0.992554
638	87	12			0.992554
639		12	87		0.992554
640			87	12	0.992554
641	87			12	0.992554
645			12	87	0.992554
647		12	87		0.992554
648	12		87		0.992554
649	87	12			0.992554
651		12	87		0.992554
652	12			87	0.992554
667		14		85	0.993533
739	25		75		0.996473
744		80		20	0.995493
770		80	20		0.995493
979	91	8			0.999766
982	92		8		0.999718
985	8	92			0.999718
986		8		92	0.999718
990			8	91	0.999766
997		8	91		0.999807
1247	16	83			0.994512
1297		16		83	0.994512
1446		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain