SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene684

Length: 1641 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene684 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exostosin family protein [Arabidopsis thaliana] emb\|CAB37544.1\| putative protein [Arabidopsis thaliana] emb\|CAB80469.1\| putative protein [Arabidopsis thaliana] gb\|AAK93666.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45007.1\| unknown protein [Arabidops	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	0.0	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1W4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, No stop codon before M and low homology subject,

Fln protein: MAERKMAWGIFAAILMSVLPLVIHLPKEVCGISNQGSTLPNILYENTDIGVNERTLLSTDAVHNNLYLFASTFEANYEQMLSNFKIFIYPRKHHDFGSPEWCSNRTFRDISKPVAMFYESLVTSAFTTDDPEEAHLFFVPFSIDALRITLATHKSRFLRRYIDGLRTEYPYWNRTLGADHFYVSCEGIDIDSSRNVVELKKNSIQVSCYPLPVGANWRFYPHKDINMPPIDSAAPGHKILNFKPDQRQSQTFLAYCVNWPEAIPDLESTLSQWKTDPGFVLDPLVVEPSLYAQRLSSSRFCLNFVGGGNPLFLLDAMTFGCIPVIISSSPFFDLPFQDILNWKEFLVIVNMRQVSKLKQLLQSIPEARFLKMKSLAKEASKHLKWHSTPRPYDAFYSLMYQLWLRRHTIRYARQL*

Protein Length: 417

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGTCTGGGGGGAGTTCTCATCCTTGTCTGAATGCTAAATCCTTCAAAGAACTCGTCTCACATTCATACGTTGCAGGCCAAGATATACTAAAA_-_ATGGCAGAGAGGAAAATGGCATGGGGGATTTTTGCAGCGATCCTGATGTCGGTATTACCACTGGTTATTCACCTTCCTAAAGAAGTCTGCGGGATCAGCAATCAAGGTAGCACATTGCCTAACATTCTCTATGAAAATACAGATATCGGTGTTAATGAAAGAACCCTTCTATCTACAGATGCAGTCCACAATAATTTATACCTTTTTGCATCAACATTTGAGGCAAATTATGAGCAAATGCTTTCAAATTTCAAGATTTTTATTTACCCTCGTAAGCACCATGATTTTGGGTCACCTGAGTGGTGCAGCAACCGGACGTTTAGAGACATCAGTAAACCTGTGGCAATGTTTTATGAAAGCCTTGTGACTAGTGCCTTTACTACAGATGATCCAGAAGAAGCCCATTTGTTCTTTGTGCCGTTTTCCATTGATGCCCTGAGAATCACTTTGGCCACACATAAATCAAGGTTTTTGAGAAGATATATAGATGGACTGAGAACTGAGTATCCATATTGGAATAGAACCCTAGGTGCAGACCATTTTTATGTTTCGTGTGAGGGAATAGATATAGATTCTTCTAGAAATGTTGTCGAGTTAAAGAAGAATTCAATTCAGGTCTCCTGCTATCCTCTGCCTGTTGGCGCAAATTGGCGTTTTTACCCCCATAAGGACATAAACATGCCCCCCATTGATTCAGCAGCTCCTGGGCACAAAATCCTAAATTTTAAGCCCGACCAGAGGCAGTCTCAAACATTTCTTGCTTATTGTGTGAACTGGCCGGAAGCAATTCCAGATCTTGAATCAACTTTGTCGCAATGGAAAACTGATCCAGGTTTTGTGTTGGATCCCCTTGTAGTAGAGCCTTCTCTTTATGCACAGAGGTTGAGTTCCAGCAGGTTTTGTTTGAATTTCGTAGGTGGTGGGAATCCATTATTCCTGCTAGATGCAATGACATTTGGATGCATTCCAGTTATCATATCCAGCAGTCCCTTCTTCGACTTGCCCTTTCAGGATATCCTTAATTGGAAAGAATTCTTGGTTATTGTGAACATGAGGCAGGTAAGTAAGCTGAAGCAACTACTGCAGAGTATACCAGAGGCCCGTTTCCTGAAGATGAAGAGCCTAGCCAAAGAGGCAAGCAAGCATTTGAAGTGGCATTCTACACCAAGGCCTTATGATGCTTTCTATAGTCTGATGTACCAGTTGTGGCTAAGGCGACATACTATCAGATATGCTCGACAGTTGTAGGCATATCAGTAGCTGAGGTCTTAGTTTTATTTTCAAGTTAACTGTCATGTTGCTGCATGTGCGGCTTTCAGTACAGTGGAAAACATCAAGTTTCTGTTGTTGCAGGTAGTGTCGATTCGTTGCTTTATGTAATTGGATATGCTATGATTTTTAGACAGGGAGAAAGGTGGCTGATTGCTTGGTATGTTTAAGAACAGTGCACAGGCTACTTCTTTTTAACATGGGTGGGCCTTGTCTTTCCAAGCCCCATCTTTGGTTTTCTTATCCAAGTT

Fln Alignment:

sp_v1.1_unigene684___LVTSAFTTDDPEEAHLFFVPF----SIDALRITLATHKSRFLRRYIDGLRTEYPYWNRTLGADHFYV------SCEGIDIDSS--RNVVELKKNSIQVSCYPLPVGANWRFYPHK-DINMPPIDSAAPGHKILNFKPDQRQSQTF-----LAYCV-NWPE----AIPDLESTLSQWKTDPGFVLDPLVVEPSLYAQRLSSSRFCLNFVGGG--NPLFLLDAMTFGCIPVIISSSPFFDLPFQDILNWKEFLVIVNMRQVSKLKQLLQSI-PEARFLKMKSLAKEASKHLKWHSTP-RPYDAFYSLM
A9P1W4_____________LLGSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQYISTNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTF----GQRYHVCLKKGSITVPPY--APPQKMQAHLIPPSTPRSIFVYFRGLFYDVGNDPEGGYYARGARASVWENFKDNPLF--DISTEHPATYYEDMQRAIFCLCPLGWAPWSPR-LVEGVIFGCIPVIIADD--IVLPFADAIPWEEIGVFVAEKDVPNLDTILTSIPPEVILRKQRLLANPAMKQAMLFPQPAQPGDAFHQIL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1470		33		66	0.997452
1489		33	66		0.997452
1579			33	66	0.997452
1583	33	66			0.997452
1585		33		66	0.997452
1587		66	33		0.997452
1589	66	33			0.997452
1590		33	66		0.997452
1592		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain