SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene683

Length: 2656 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene683
ATGGGGATATGACAGGGCAACTGATGGAGGTGGAAAAGTGTGAAATGCCTGGAGATGTGGCTTGTCTGGATATTGCTCCAGTTCCTGAAGGCAGACAAAGGTCTAGATTCCTGGCCGTAGGATTATATGACAGCACAATTCGCATATATTCTTTGGATCCTGATGATTGTTTGGTTGCTTTGAGTATGCAGGCTGTATCTTCTCCTCCAGAATCTCTTCTCTTACTTGAAGTTCAGGCGTCTGTTGGAGGGGAGGACGGTGCAGATCACCCAGCGAGTGTGTTTTTGAATGCTGGTTTGCAGAATGGGGTTCTTCTTAGAACTGAGGTAGATATGGCAAATGGTAGCCTTTCAGACACACGGACCAGATTCTTGGGTTTAAGAGCACCAAAACTTTTTTCTGCTATAGTGAGAGGCCGTCGGGCAACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAGGGGCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTGCATTTAGCATTTGCTCTGTTACTTTTCATGATAAAGAATGGGGAACACTTGTGGCCATTGGAACTGCAAAGGATTTAGAATTTTGGCCAAAGAGGCATTGTTCAGGAGGTTTTATTCATATCTATAGGTCTGTGGATGATGGCAAAGCCTTGGAGCTTTTGCATAAAACACCAGTTGATGGAGTACCTCTTGGATTATGTCAATTTCAAGGCCGCTTATTAGTTGGGATTGGACAGGTGCTGAGAATATATGACTTGGGCAAAAGGAAATTGCTGCGGAAATGTGAGAATAAGCTCTTTCCCAATACAATTGTGTCTATTCACACTTATGGTGATCGTATTTATGTTGGAGATATTCAAGAGTCATTTCACTATGTGAAGTATCGGCGCGATGAGAACCAGCTGTATATATTTGCTGATGATTGTGTGCCTCGTTGGCTAACTTCTTCAATACATATAGACTTTGACACTATGGCAGGTGCAGATAAGTTTGGAAATGTTTACTTTGTTCGCTTACCACAGGATGTATCAGAGGAGATTGAAGATGATCCTACTGGTGGAAGGATCAGGTGGGAACAGGGTAAACTTAATGGAGCACCCAATAAAGTTGAAGAAATAATACAATTTCATATAGGCGATGTAGTATCAAGTTTACAGAAGGCATCACTTATACCTGGTGGTGGTGAATGTCTCATTTATGGGACAGTGATGGGAAGTATTGGGGCACTGCTGCCATTTACATCGAGAGAGGATGTTGACTTCTTCTCACATTTGGAGATGCATTTGAGGCAGGAACACCCTCCTTTGTGTGGTAGAGATCACATGGCTTATAGATCATCTTATTTTCCAGTGAAGGATGTGATTGATGGTGATCTTTGCGAGCAGTTTCCTACCCTGCCACCTGATTTGCAGCGCAAGATTGCAGAGGAGCTTGATCGTTCACCTGGTGAAATATTGAAGAAACTAGAAGACATCAGGAATAAGATAATCTAATTGAACACTATTGCTTGACATCTTGGAGCAATGAGAAATTTAGGGGCAAATTTTAGCTAATAGGCAAAATATTTTAGGTTAACATAGAAAGTGGGTGAATTTTGATTATTAACCATGTTGCAAATATCTCTGTTTCCCTCAATATTTCTGATATTTTTCGAGTGACTTTCAGGTCCAAGGTTTGAGGAAAACCTTGCGGGGAAGAGGCTTCCCCACATTAATGGATCACATTCCTAGTAAACCTGCTGGTGTAGACTAGGCTGCATCACCCAGGGGGATTTGGAAAAGGCACCTGATGGAACAGAACTAGCCAAATGCTCAGCAACATAGGTGACAACTGATTTAGCCCCTTGGGCTTACGCATGAGGATAGTTTATCCCATATTTCCGATAAGTTTCTGTTTGGAATCTTGGTGATATTTTCCATGAAATGATATTTGCAATATTGTTCTAAACTGATGGTATCATGGTATAATTAAGTTGCTTTACCCGTTTGGGAGAGTAGGAAGTTCAATATCTTATTTGGTAAATTTCTTTGACACTATTTATTCCACCTCTTCTACCATGATAAGTTATCCCAGCCATGGGTAAGTCTTTCTGGTCATTGTGGGTTGGTACTCCGGTTTGCACTTCCGCTGTGTTTAAATGAAATAGACATCTTGCTGGTAAACCACTAGAATGCATTCAAGAAGGAAATCTGGCAGCTACCTC

Ace file of the UniGene sp_v1.1_unigene683

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	spliceosomal protein sap, putative; K12830 splicing factor 3B subunit 3	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	89%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K6

Fln msg: your sequence is longer than subject: 646 - 173

Fln protein: MTGQLMEVEKCEMPGDVACLDIAPVPEGRQRSRFLAVGLYDSTIRIYSLDPDDCLVALSMQAVSSPPESLLLLEVQASVGGEDGADHPASVFLNAGLQNGVLLRTEVDMANGSLSDTRTRFLGLRAPKLFSAIVRGRRATLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVMPLRYTPRKFILHPKQKSLIIIESDQGAFTAEEREAAKKECLEAAGLGESGNMETEQQNGDDEEKEDPLPDEQYGYPKAESKKWASCVRVLDPKTGETTCLLALQDNEAAFSICSVTFHDKEWGTLVAIGTAKDLEFWPKRHCSGGFIHIYRSVDDGKALELLHKTPVDGVPLGLCQFQGRLLVGIGQVLRIYDLGKRKLLRKCENKLFPNTIVSIHTYGDRIYVGDIQESFHYVKYRRDENQLYIFADDCVPRWLTSSIHIDFDTMAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVSSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIAEELDRSPGEILKKLEDIRNKII*

Protein Length: 647

Fln nts: ATGGGGAT_-_ATGACAGGGCAACTGATGGAGGTGGAAAAGTGTGAAATGCCTGGAGATGTGGCTTGTCTGGATATTGCTCCAGTTCCTGAAGGCAGACAAAGGTCTAGATTCCTGGCCGTAGGATTATATGACAGCACAATTCGCATATATTCTTTGGATCCTGATGATTGTTTGGTTGCTTTGAGTATGCAGGCTGTATCTTCTCCTCCAGAATCTCTTCTCTTACTTGAAGTTCAGGCGTCTGTTGGAGGGGAGGACGGTGCAGATCACCCAGCGAGTGTGTTTTTGAATGCTGGTTTGCAGAATGGGGTTCTTCTTAGAACTGAGGTAGATATGGCAAATGGTAGCCTTTCAGACACACGGACCAGATTCTTGGGTTTAAGAGCACCAAAACTTTTTTCTGCTATAGTGAGAGGCCGTCGGGCAACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAGGGGCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTGCATTTAGCATTTGCTCTGTTACTTTTCATGATAAAGAATGGGGAACACTTGTGGCCATTGGAACTGCAAAGGATTTAGAATTTTGGCCAAAGAGGCATTGTTCAGGAGGTTTTATTCATATCTATAGGTCTGTGGATGATGGCAAAGCCTTGGAGCTTTTGCATAAAACACCAGTTGATGGAGTACCTCTTGGATTATGTCAATTTCAAGGCCGCTTATTAGTTGGGATTGGACAGGTGCTGAGAATATATGACTTGGGCAAAAGGAAATTGCTGCGGAAATGTGAGAATAAGCTCTTTCCCAATACAATTGTGTCTATTCACACTTATGGTGATCGTATTTATGTTGGAGATATTCAAGAGTCATTTCACTATGTGAAGTATCGGCGCGATGAGAACCAGCTGTATATATTTGCTGATGATTGTGTGCCTCGTTGGCTAACTTCTTCAATACATATAGACTTTGACACTATGGCAGGTGCAGATAAGTTTGGAAATGTTTACTTTGTTCGCTTACCACAGGATGTATCAGAGGAGATTGAAGATGATCCTACTGGTGGAAGGATCAGGTGGGAACAGGGTAAACTTAATGGAGCACCCAATAAAGTTGAAGAAATAATACAATTTCATATAGGCGATGTAGTATCAAGTTTACAGAAGGCATCACTTATACCTGGTGGTGGTGAATGTCTCATTTATGGGACAGTGATGGGAAGTATTGGGGCACTGCTGCCATTTACATCGAGAGAGGATGTTGACTTCTTCTCACATTTGGAGATGCATTTGAGGCAGGAACACCCTCCTTTGTGTGGTAGAGATCACATGGCTTATAGATCATCTTATTTTCCAGTGAAGGATGTGATTGATGGTGATCTTTGCGAGCAGTTTCCTACCCTGCCACCTGATTTGCAGCGCAAGATTGCAGAGGAGCTTGATCGTTCACCTGGTGAAATATTGAAGAAACTAGAAGACATCAGGAATAAGATAATCTAA___TTGAACACTATTGCTTGACATCTTGGAGCAATGAGAAATTTAGGGGCAAATTTTAGCTAATAGGCAAAATATTTTAGGTTAACATAGAAAGTGGGTGAATTTTGATTATTAACCATGTTGCAAATATCTCTGTTTCCCTCAATATTTCTGATATTTTTCGAGTGACTTTCAGGTCCAAGGTTTGAGGAAAACCTTGCGGGGAAGAGGCTTCCCCACATTAATGGATCACATTCCTAGTAAACCTGCTGGTGTAGACTAGGCTGCATCACCCAGGGGGATTTGGAAAAGGCACCTGATGGAACAGAACTAGCCAAATGCTCAGCAACATAGGTGACAACTGATTTAGCCCCTTGGGCTTACGCATGAGGATAGTTTATCCCATATTTCCGATAAGTTTCTGTTTGGAATCTTGGTGATATTTTCCATGAAATGATATTTGCAATATTGTTCTAAACTGATGGTATCATGGTATAATTAAGTTGCTTTACCCGTTTGGGAGAGTAGGAAGTTCAATATCTTATTTGGTAAATTTCTTTGACACTATTTATTCCACCTCTTCTACCATGATAAGTTATCCCAGCCATGGGTAAGTCTTTCTGGTCATTGTGGGTTGGTACTCCGGTTTGCACTTCCGCTGTGTTTAAATGAAATAGACATCTTGCTGGTAAACCACTAGAATGCATTCAAGAAGGAAATCTGGCAGCTACCTC

Fln Alignment:

sp_v1.1_unigene683___MAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVSSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIAEELDRSPGEILKKLEDIRNKII
D5A8K6_____________MAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
947		12		87	0.992554
949	87			12	0.992554
950	87	12			0.992554
955	12	87			0.992554
956	87	12			0.992554
957		12		87	0.992554
960	87		12		0.992554
963	85			14	0.993533
964			16	83	0.994512
966		16		83	0.994512
967	16		83		0.994512
971	16			83	0.994512
1094	80		20		0.995493
1095			20	80	0.995493
1347	75			25	0.996473
1349		25	75		0.996473
1350	75		25		0.996473
1351		25	75		0.996473
1353	80		20		0.995493
1354		80		20	0.995493
1355		80	20		0.995493
1363		16		83	0.994512
1365			16	83	0.994512
1366	83		16		0.994512
1367		16		83	0.994512
1368		16		83	0.994512
1414	87		12		0.992554
1474	87		12		0.992554
2003	87		12		0.999964
2467		25		75	0.996473
2470			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain