SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene680

Length: 2396 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene680
TCTTCATATTCAAAGGATGGGATTCCAGGGAAAGGGTATGGGAATCCTGTACAGGGTGGTGGCGGAGGCTCAACCATGGTACTGCACATGAATGTAGGACCTTTAGGCCCATTCACAGGTTATGCTAGTGTCTTGAAAAGCTCAAAGTACTTGAAGCCAGCCCAGCAGTTATTGGATGAGTTTTGCAATGTTGGGGGCAACATCAGAGCAACAATATGCCGAAGGAAAAACTTTCTAAACCTCAAGCTGGATGGGTGGATAGAAGTTCAGGAGGTGGCAGTGTTGTTCAGAATAGTTTAGACATTAAAAGTGATATCAGTGGAAAAATGGGCGACTCCTGTGCTGCAGCATCAACTACCTTCGCCCCTGGAGAAACAAGTGAAAGCGGAATGGAGCAGCTGGCATATTCTGGTGATAGATTCGAAATTCAGAGGAGGCGAACGAAGCTTTTATCGATGCTTGAAGAGGTCCACAGGAGATACAGGCAATATTGTGAACAAATGCAGATGGTTGTTACGTCTTTTGAATCTATAGCCGGTCTAGGAGCGGCAACTCCATACACTGCCTTGGCCCTGAAGGCAATGTCAAGGCACTTTAAATGTTTAAGAGACGCAATCAATAATCAGCTTAGAGTCACAAGTAAGGCATTAGGCGAGGACTCCAGTCTTGCTGGTGTAAGTAGAGGGGAAACACCAAGATTAAGATTTATTGATCAAAACATTAGGCAACAACGTGCAGTGCAGCATTTAGGAATGCTTGAACAACATGCTTGGCGTCCACAGCGAGGACTTCCGGAACGTTCGGTGTCTGTTCTTCGTGCATGGTTATTTGAGCATTTTCTCCACCCGTACCCTACGGATGCCGATAAACATATGTTGGCTAGACAAACCGGTCTTTCAAGAAGTCAGGTTTCCAACTGGTTCATAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGACTCATCTGAAATGGATATCACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAAACTGAGTGTCCTATGGGGAATGAGAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAGCACATCACAAACTGGTCAAGAAAGCTCTGGTACAGCTATGAGCATGCCTCTAGAATCACAGTTTAGGCCAGCTGAAAAAGTTGATGCTATGAGAGAAGCAGATATGAACACTAATAGAAATGTTCGTGAAACCCAGTCTCTGTCCTCAGTTAATGTTGCAACAATAGGGGTTGATAGAAGGCTCGAGGACACTCATGGGTGTCAGAATTTTGATCACGGCACCAAAAGATTTAGGAATGATGAGAGAAACAAGCTTCAAGGATTTGAAAATACAATTGATTTTTCTTCATACAACCATAGCTCCGCCATGGGTGGAAGGTATTCGCATGAGGATTTCACACCTCGATTTGGGAGTGCTGGCGTGTCTTTAACGTTGGGCCTGCGCCACAGTGGAGGTCAAGAGAAGTACAGCAATGGTCTTTATATATCTAGAGATGATGCAGCAGCAGATTCCAATCACCATTATAATATTCACGACAGTCATGATCAAGGCTATGGAAGTGGCTTTGATGCCCAAGACATGCAGTTCAGAAAGCACGTAGGAAGTCAGCTCTTGCATTGATTTAGTGGCTTAATTAGGAACTATAGAAACACTAAAGAGTTTCTTGCAGAAGATGACATCTTAATGCAGACATATAACGTCTCAAATTATGTGGAACGAGGTGAGAGTTTCAACCTTCAACTCCCCATCTCGCTCTGTACAAATTAACCCACGGAAACAGGTAGCTTGCTATTTAAAATTGTGAAAGAAATCTTGTAATATGTCTAGTTCTTAAGCTTGATACCAGCTTGGCCAAAGTGGTCACTGACATTTAATGCTGATGATCATGAATATTGAGGCTGATTAATGCAGCAGCAACAATATTGTCATCCATCGCTGGAGCGGAATAAGTTGCATTTATTTTCCCAGGTAAGAAATGTGAAACTATAGGGCTATGAATGGCATCTTCTACGTCCACAGAAAAGTTAATCGCAGGTAAACTATTTATAACGCTTTAGAAACAAATGCTGGTTCTTGTGATTCATAATAACTTTCAGATGAACAAGCTCCTGCTGGATGGAAAGAAAGTTTCGTTATCTCTTATAATAGTTATACCGGAATGCAAGACTGTATTTTAATATTGTAAAGCTGCCCTTGCNATCAAAGCAACGGGCATTGTACATTAATGATTGGTGGAACATGGTTCCTGGCAGCTTCTTCCGCTTTTGAAGTTACTCTGAAATATTCTCC

Ace file of the UniGene sp_v1.1_unigene680

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative BEL1-like protein (Fragment) n=1 Tax=Gnetum gnemon RepID=Q7XA57_GNEGN	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	bel1 homeotic	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	69%
Blast2go	POX	IPR006563	-	69%
Blast2go	Homeodomain-like	IPR009057	-	69%
Blast2go	Homeodomain-related	IPR012287	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR06

Fln msg: your sequence is longer than subject: 504 - 241

Fln protein: MPKEKLSKPQAGWVDRSSGGGSVVQNSLDIKSDISGKMGDSCAAASTTFAPGETSESGMEQLAYSGDRFEIQRRRTKLLSMLEEVHRRYRQYCEQMQMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQLRVTSKALGEDSSLAGVSRGETPRLRFIDQNIRQQRAVQHLGMLEQHAWRPQRGLPERSVSVLRAWLFEHFLHPYPTDADKHMLARQTGLSRSQVSNWFINARVRLWKPMVEEMYLQESKDSSEMDITLKRKESDSRDKTECPMGNEKNMNKHGKMMLDGGSDRQSASEGGCSKFDHGGSTSQTGQESSGTAMSMPLESQFRPAEKVDAMREADMNTNRNVRETQSLSSVNVATIGVDRRLEDTHGCQNFDHGTKRFRNDERNKLQGFENTIDFSSYNHSSAMGGRYSHEDFTPRFGSAGVSLTLGLRHSGGQEKYSNGLYISRDDAAADSNHHYNIHDSHDQGYGSGFDAQDMQFRKHVGSQLLH*

Protein Length: 505

Fln nts: TCTTCATATTCAAAGGATGGGATTCCAGGGAAAGGGTATGGGAATCCTGTACAGGGTGGTGGCGGAGGCTCAACCATGGTACTGCACATGAATGTAGGACCTTTAGGCCCATTCACAGGTTATGCTAGTGTCTTGAAAAGCTCAAAGTACTTGAAGCCAGCCCAGCAGTTATTGGATGAGTTTTGCAATGTTGGGGGCAACATCAGAGCAACAAT_-_ATGCCGAAGGAAAAACTTTCTAAACCTCAAGCTGGATGGGTGGATAGAAGTTCAGGAGGTGGCAGTGTTGTTCAGAATAGTTTAGACATTAAAAGTGATATCAGTGGAAAAATGGGCGACTCCTGTGCTGCAGCATCAACTACCTTCGCCCCTGGAGAAACAAGTGAAAGCGGAATGGAGCAGCTGGCATATTCTGGTGATAGATTCGAAATTCAGAGGAGGCGAACGAAGCTTTTATCGATGCTTGAAGAGGTCCACAGGAGATACAGGCAATATTGTGAACAAATGCAGATGGTTGTTACGTCTTTTGAATCTATAGCCGGTCTAGGAGCGGCAACTCCATACACTGCCTTGGCCCTGAAGGCAATGTCAAGGCACTTTAAATGTTTAAGAGACGCAATCAATAATCAGCTTAGAGTCACAAGTAAGGCATTAGGCGAGGACTCCAGTCTTGCTGGTGTAAGTAGAGGGGAAACACCAAGATTAAGATTTATTGATCAAAACATTAGGCAACAACGTGCAGTGCAGCATTTAGGAATGCTTGAACAACATGCTTGGCGTCCACAGCGAGGACTTCCGGAACGTTCGGTGTCTGTTCTTCGTGCATGGTTATTTGAGCATTTTCTCCACCCGTACCCTACGGATGCCGATAAACATATGTTGGCTAGACAAACCGGTCTTTCAAGAAGTCAGGTTTCCAACTGGTTCATAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGACTCATCTGAAATGGATATCACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAAACTGAGTGTCCTATGGGGAATGAGAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAGCACATCACAAACTGGTCAAGAAAGCTCTGGTACAGCTATGAGCATGCCTCTAGAATCACAGTTTAGGCCAGCTGAAAAAGTTGATGCTATGAGAGAAGCAGATATGAACACTAATAGAAATGTTCGTGAAACCCAGTCTCTGTCCTCAGTTAATGTTGCAACAATAGGGGTTGATAGAAGGCTCGAGGACACTCATGGGTGTCAGAATTTTGATCACGGCACCAAAAGATTTAGGAATGATGAGAGAAACAAGCTTCAAGGATTTGAAAATACAATTGATTTTTCTTCATACAACCATAGCTCCGCCATGGGTGGAAGGTATTCGCATGAGGATTTCACACCTCGATTTGGGAGTGCTGGCGTGTCTTTAACGTTGGGCCTGCGCCACAGTGGAGGTCAAGAGAAGTACAGCAATGGTCTTTATATATCTAGAGATGATGCAGCAGCAGATTCCAATCACCATTATAATATTCACGACAGTCATGATCAAGGCTATGGAAGTGGCTTTGATGCCCAAGACATGCAGTTCAGAAAGCACGTAGGAAGTCAGCTCTTGCATTGA___TTTAGTGGCTTAATTAGGAACTATAGAAACACTAAAGAGTTTCTTGCAGAAGATGACATCTTAATGCAGACATATAACGTCTCAAATTATGTGGAACGAGGTGAGAGTTTCAACCTTCAACTCCCCATCTCGCTCTGTACAAATTAACCCACGGAAACAGGTAGCTTGCTATTTAAAATTGTGAAAGAAATCTTGTAATATGTCTAGTTCTTAAGCTTGATACCAGCTTGGCCAAAGTGGTCACTGACATTTAATGCTGATGATCATGAATATTGAGGCTGATTAATGCAGCAGCAACAATATTGTCATCCATCGCTGGAGCGGAATAAGTTGCATTTATTTTCCCAGGTAAGAAATGTGAAACTATAGGGCTATGAATGGCATCTTCTACGTCCACAGAAAAGTTAATCGCAGGTAAACTATTTATAACGCTTTAGAAACAAATGCTGGTTCTTGTGATTCATAATAACTTTCAGATGAACAAGCTCCTGCTGGATGGAAAGAAAGTTTCGTTATCTCTTATAATAGTTATACCGGAATGCAAGACTGTATTTTAATATTGTAAAGCTGCCCTTGCaATCAAAGCAACGGGCATTGTACATTAATGATTGGTGGAACATGGTTCCTGGCAGCTTCTTCCGCTTTTGAAGTTACTCTGAAATATTCTCC

Fln Alignment:

sp_v1.1_unigene680___QRRRTKLLSMLEEVHRRYRQYCEQMQMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQLRVTSKALGEDSSLAGVSR--------GETPRLRFIDQNIRQQRAVQ---------HLGMLEQHAWRPQRG--LPERSVSVLRAWLFEHFLHPYPTDADKHMLARQTGLSRSQVSNWFINARVRLWKPMVEEMYLQESKDSSEMDITL
A9NR06_____________QHRTTVSIGMDPELDQFMEAYCE---MLTKYHEELT-----KPFKE-AMSFLKKIEAQLNSLSKGTIRISPSAENDEKTEGGASSEEVEDGSGGETD-FQEVDHHAVEDRELKDHLLRKYSGYLSSLKQEFMKKKKKGKLPKDARQKLLDWWTVHYKWPYPSETEKIALAECTGLDQKQINNWFINQRKRHWKPS-EDMQLMAMDGQSPHGATL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1348	66			33	0.997452
1351		66	33		0.997452
1646	90		10		0.90298
1661			80	20	0.999996
1815	85		14		0.993533
1900	16	83			0.994512
1949		12		87	0.992554
2309		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain