SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene675

Length: 1127 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene675

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SM/Sec1-family protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3H0_PHYPA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	snare-interacting protein keule	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sec1-like protein	IPR001619	-	0.0	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG5

Fln msg: Distance to subject end: 339 aas, your sequence is shorter than subject: 304 - 627

Fln protein: MTDNGASSSASPSHGSSKSFRNATKDRLLHEMLRSTKKGGSKSDWKVLIMDKVTVKVMSCSCKMADITDEGISLVEDLSKRRQPLPTMEVVYFIQPTRESVSMFISDMTGRSPLYKKAYVFFSSPISRDLLQLIKKDTSLLSRISALREVNLEYLAIDTQGFSTDSERALEQLFAEQSDKSQDYKVCIDTMACRLATVFASMKEFPTVRFCAPKSAKDTTMPTTFRELVSTKLAAELLDRLVKYKSTIPNYPQTETCELLIVDRSIDPIAPVIHEWTYDAMCHDLLNMEGNKYVYEMTTHKGRK

Protein Length: 305

Fln nts: GAATTGGATTCCAACATGGAAGGAAATGAAAAGTAGGAAAGACGCGAATGGACGGAAGCTTTGCGTGGGTTGATGGAAGGCGGCGTATAATACCTTCACAATTTCTTTTGTAAGAGAGGCGAGTATGTCTTAAAGACATTGCGTCGGTGCGAGGGTTAGAAGGTTTCATACCCCTTTCTCCACAATTCGGAGGGAGCCACTGGTCAGCGAGAA_-_ATGACAGACAATGGAGCTTCCTCCTCCGCTTCCCCTTCCCACGGCTCCTCGAAATCCTTCCGCAACGCCACAAAGGACAGATTGCTGCATGAAATGCTCCGATCAACAAAGAAAGGTGGATCAAAGTCAGATTGGAAGGTGCTTATCATGGACAAAGTAACTGTCAAAGTGATGTCCTGTTCTTGCAAGATGGCTGATATAACCGATGAAGGCATCTCATTGGTCGAGGACTTAAGTAAGCGGAGGCAACCTCTTCCCACTATGGAGGTTGTCTATTTTATTCAGCCAACAAGGGAAAGTGTTTCTATGTTTATTTCTGACATGACAGGAAGGTCTCCATTATACAAAAAGGCATATGTGTTCTTCAGTTCACCTATTTCAAGAGATTTACTGCAACTTATCAAGAAAGATACAAGTTTATTATCCAGAATATCAGCTCTGAGGGAGGTGAATTTGGAGTACCTAGCTATTGATACTCAGGGATTTTCTACAGACAGTGAGAGGGCACTTGAGCAACTATTTGCAGAGCAGAGTGATAAAAGTCAAGATTATAAAGTTTGCATTGACACCATGGCCTGCCGACTTGCGACTGTTTTTGCATCTATGAAGGAATTCCCAACAGTCAGATTTTGTGCCCCCAAATCAGCTAAAGATACAACAATGCCGACCACTTTCCGTGAATTGGTTTCTACCAAACTTGCAGCGGAACTGTTGGATCGCCTTGTGAAATACAAATCAACAATACCAAATTATCCACAGACAGAAACTTGTGAATTGCTCATTGTTGATCGATCAATTGATCCAATTGCTCCAGTGATACATGAATGGACATATGATGCTATGTGTCATGATCTATTGAATATGGAAGGAAATAAGTATGTTTATGAGATGACTACTCATAAAGGAAGAAAGGG

Fln Alignment:

sp_v1.1_unigene675___GGSKSD--WKVLIMDKVTVKVMSCSCKMADITDEGISLVEDLSKRRQPLPTMEVVYFIQPTRESVSMFISDMTGRSPLYKKAYVFFSSPISRDLLQLIKKDT---SLLSRISALREVNLEYLAIDTQGFSTDSERALEQLFAEQSDKSQDYKVCIDTMACRLATVFASMKEFPTVRFCAPKSAKDTTMPTTFRELVSTKLAAELLDRLVKYKSTIPNY----PQTETCELLIVDRSIDPIAPVIHEWTYDAMCHDLLNMEGNK
A9NYG5_____________GGTADEEVYKVLILDKFCRDILSPLIHVKDLRKHGITLYFTIDKERQTIPDVPAIYFVQPTSANIERIIVDAS--RGVYESFHLNFSSSLPRSLLEELAAGTLKSDCIHRIGKVYDQYLEFVTLENGMFSLAQPSTYVQL-NDPKAQDKDIEAIIDGIVNGLFSVLATLGVVPIIR-CARGGP---------AEMVASALDSRLRDHLLSKNNLFTEAGSLGSSFQRPLLCIFDRNFELSAAVQHEWSYRPLVHDVLGMKLNR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
613		10		90	0.90298
654	10	90			0.90298
657	90		10		0.90298
707	90		10		0.90298
884		70		30	1.0
911	90			10	0.90298
912		90	10		0.90298
913			10	90	0.90298
1087	83			16	0.994512
1089	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain