SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene671

Length: 1654 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene671 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RMH5_RICCO	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	61%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	61%
Blast2go	Armadillo-like helical	IPR011989	-	61%
Blast2go	Armadillo-type fold	IPR016024	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A903

Fln msg:

Fln protein: MLRNEGSSELGDTSLSWSCDIVESQNVKEDPCKTYERLLSSLGGPSLELQCRAAEEIRFLAKDDDEARSYMGANGFIHMLVNFLRSAIDACNAQAQETGALALFNIGVNNNRNKAAILAAGAVPLLLDLLDSETSEAAVAVLLMLSSLEDNKASIGASGAIPLLIKLMDSESNQCRQDAVNALYNLSTFKGNRSYMVSAGVVSRLAHLLLVAEGDCTEKCLTILYNLASTEEGRATIADTEGCIGTIADILDTGTTIAQEQAAASLLLLCTNSFEHSQMVLREGVIPYLVTLSMNGSPRGKDKAQKLLQHFREQRQQDVSCQSSTAVCTPQPSIYGESLKENKTTHRTTSKKIGRTLSLFWKAKSFAFYQC*

Protein Length: 373

Fln nts: ATTCTGGATCTGTCAAGAGCATTGATGGTGGTCGCCTGAGGGAGCTCAAGGTAGTCCCATTGAGGGACAATCAAGTTGCATGTGCTTGTGAGGATGATGTTAGCAGATTATCAACTGGTACTTTTGGTAACAGTTCTTACTGTGATTCACCGGCT_-_ATGCTAAGAAATGAAGGATCGAGTGAACTAGGTGATACAAGCCTTTCCTGGTCATGTGACATAGTTGAATCTCAAAATGTCAAAGAGGACCCTTGTAAAACATATGAAAGGTTGCTCTCAAGCCTTGGTGGACCGTCACTAGAACTGCAATGTAGAGCAGCAGAAGAGATTAGATTTCTCGCAAAGGATGATGATGAAGCTCGTTCTTACATGGGTGCCAATGGTTTCATTCACATGCTTGTGAACTTCCTACGTTCTGCTATTGATGCATGTAATGCCCAAGCACAAGAGACTGGAGCTTTGGCGCTTTTCAATATTGGTGTGAATAATAACAGGAACAAAGCAGCAATCTTGGCTGCAGGTGCAGTGCCTCTTTTGTTGGATCTTCTTGATTCTGAAACATCTGAAGCAGCTGTAGCTGTCTTGCTTATGTTATCTAGTTTGGAAGATAATAAAGCTAGCATTGGAGCTTCTGGAGCAATACCTCTTCTCATTAAACTGATGGACTCGGAATCTAACCAATGTAGACAAGATGCTGTAAATGCCTTGTATAATTTATCAACATTCAAGGGAAACAGGTCCTACATGGTATCTGCAGGAGTTGTTTCCAGGCTTGCTCATCTTCTTCTTGTTGCAGAGGGTGACTGTACAGAAAAATGCCTTACAATTTTGTATAACCTTGCTTCTACTGAAGAGGGCAGAGCAACAATTGCTGATACGGAAGGCTGCATTGGAACCATTGCAGATATTCTTGATACAGGTACAACCATTGCACAAGAACAAGCAGCAGCCTCTCTCTTATTGTTATGTACTAATAGTTTCGAGCACAGTCAAATGGTTTTAAGGGAAGGGGTCATTCCTTATTTGGTTACTCTTTCTATGAATGGAAGCCCAAGGGGAAAGGACAAAGCACAGAAATTGCTACAGCATTTCAGAGAGCAGCGACAGCAAGATGTGTCCTGCCAGTCTTCTACAGCTGTGTGTACCCCTCAGCCATCAATCTATGGGGAGAGCTTGAAGGAAAATAAAACAACTCATAGAACAACTTCCAAAAAGATTGGCCGAACATTAAGCCTCTTTTGGAAGGCAAAGTCGTTTGCTTTTTATCAGTGTTAG___TATATGCGAACCAAATGGAGGCAGAACGTTTATCTTTAGTTTCTGCTGGAAGTCCTTGTAAATCAATTTCGTTTGTTGTACGGTTCTAAATTTTCTACGTAGTTGGGACCATTCAGAGGCTGCCCTGACTGTTTGTTGTAACGAAGTTAGGAATTGAATCATCTCATAGCTTGATGATTTAGGAATATACTGTACAAAAGTTTCAGAGGTGAAAAATAATTAGATAACACTGCTTTGTCGCAGATTTGTACATTATCACAGAGAGGATAATTACCTCTTTCAGTAGATGTGATGTTCTTCTATTCTAGTATAGCCTGTAAATATATATCGGAGATTTAGTTTGATCATCGCATCTTAATACATTCCACACCAATTTCTCCTTG

Fln Alignment:

sp_v1.1_unigene671___MLRNEGSSELGDTSLSWSCDIVESQNVKEDPCKTYERXXXXXXXXXXXLQCRAAEEIRFLAKDDDEARSYMGANGFIHMLVNFLRSAIDACNAQAQETGALALFNIGVNNNRNKAAILAAGAVPXXXXXXDSETXXXXXXXXXXXXXXEDNKASIGASGAIPLLIKLMDSESNQCRQDAVNALYNLSTFKGNRSYMVSAGVVSRLAHLLLVAEGDCTEKCLTILYNLASTEEGRATIADTEGCIGTIADILDTGTTIXXXXXXXXXXXLCTNSFEHSQMVLREGVIPYLVTLSMNGSPRGKDKAQKLLQHFREQRQQDVSCQSSTAVCTPQPSIYGESLKENKTTHRTTSKKIGRTLSLFWKAKSFAFYQC
D5A903_____________MLRNEESSELGDTSLSWSCDIVESQNVEEDPCKKYERLLTSLSGPPLELQCRAAEEIRFLSKDDDEARSYMGANGFIHMLVNFLRSAIDACNAQAQETGALALFNIAVNNNRNKAAILAAGAVPLLLELLDSETSEAAVAVLLMLSSLEDNKASIGASGAIPSLIKLMDSESSQCRQDAINALYNLSTFKGNRSYMVSAGAVSRLAHLLVGAEGDCTEKCLTILYHLAAIEEGRATISDTEGCIGAIADILDTGTPNAQEQAAASLLLLCTNSFEHSQMVLREGVIPSLVTLSMNGSPRGRDKAQKLLQHFREQRQRDVSCQSSTAVCTPQTSIYGESLKEKKTTHRTTSKKIGRTLSLFWKSKSFAFYQC

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
666		10		90	0.90298
667	10			90	0.90298
668	10			90	0.90298
685	87	12			0.992554
686		12		87	0.992554
687		12		87	0.992554
802		10	90		0.90298
805	10	90			0.90298
905		25	75		0.996473
963		66		33	1.0
968			22	77	0.999999
1015	83	16			0.994512
1016			83	16	0.994512
1027	50		50		1.0
1082	16		83		0.994512
1195		66		33	1.0
1232			85	14	0.993533
1258		83	16		0.994512
1260		83	16		0.994512
1261	83			16	0.994512
1262	83		16		0.994512
1263	16		83		0.994512
1268		16		83	0.994512
1269		16	83		0.994512
1272			16	83	0.994512
1274	83			16	0.994512
1275	83	16			0.994512
1278		83	16		0.994512
1281		16		83	0.994512
1342		16		83	0.994512
1343		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain