SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene667

Length: 1851 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene667

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CPSF30; CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	c-x8-c-x5-c-x3-h type zn-finger	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	73%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	73%
Blast2go	RNA binding	GO:0003723	Molecular Function	73%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCCH-type	IPR000571	-	0.0	73%
Blast2go	YTH domain	IPR007275	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Distance to subject end: 101 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 416 - 667

Fln protein: MEDPEGALSFDFEGGLEAGPAIPSYTHVLGNSIISDDLNTVTPSNGAAVFDVAGHKPSAQSGGRSFRQTVCRHWLRSLCMKGDDCGFLHQYDKSRMPVCRFFTRFGVCREQDCVYKHTNDEAKECNMYKLGFCPNGPDCRYRHQKMPGPPPPVEEVFQKTQQLAAAMNDAYPNRHPQHKHNNYHQSDRTYSQQPLASASQRLPGSSPVRGDPKNQQKQRIHRLPQHQANQSQGQSLNPMENGLLSQPNTVSAAMPLPQGHSRYFIVKSSNRENLELSVQQGMWATQRNNEAKLNEAFDSCDNVILIFSINRTRHFQGCAKMMSKIGGFVGGGGWKYAHGTAHYGRNFSLKWLKLCELTFQKTRHLRNPYNENLPVKISRDCQELENSIGEQLASLLYLEPDSELMATACAVESKRK

Protein Length: 417

Fln nts: ATGGGGGGAGCTTCCGGCGATCGGAAAACCGAGCTTGAAACCTGACAAAAGAACTAGGAAGCTTGTATACACCGAGAGAACTCCAATATTGCAGCAAGAACTCAAATATTGCAGCAACAATTGACATAATCGCGTCGGGCACATTTTCTTCGTCCCAACGAGTTCTATGTCGCGGAAAATGAAAGATTTGAAGGAGAAATCGTACTTACAAATACTGAAAAGAAGGGGTAGATATATCATTTTCAAAGCCGAAGAAACCTATTATTTAGAGCTCAAGTTGACTCCGCATAACCTTCCATGGCACCTGCGGCGCTCATTTTTATATGAGGTGGGCGAATTTGTTCGAATTTTGGCTCTACACGGTTTGATGCGGCCGTTTGTTTGATTATATGAGTAAATAAAATCACTTTTGAAGCCCACAAAATTATGTGAAACATCGTCTTATTTCGAAGTAAATAGGGTTTATAACAAGGGCTCACGGTTTGATGGAGGGTGCAGAGGAAGTTTGAAGACATTAGGGTTTAACACAAAGGCTTAGGGTTCGATGGAGGATCTACAGACGGTTTAAAGAAGTTAGTGTTGAAAACAAGAGAAGGTTTAG_-_ATGGAGGATCCAGAGGGGGCTTTGAGCTTTGATTTCGAGGGTGGTCTAGAAGCAGGGCCCGCTATTCCTTCTTATACACATGTATTGGGAAATTCTATAATTTCAGATGATTTAAATACCGTAACCCCTTCAAATGGGGCAGCTGTTTTTGACGTCGCTGGACACAAACCCTCTGCACAGTCTGGCGGAAGGAGTTTCAGGCAGACTGTGTGCAGGCACTGGCTGAGGAGTTTATGCATGAAGGGTGATGATTGTGGGTTCCTGCATCAGTATGACAAGAGCCGGATGCCGGTCTGTCGGTTCTTTACCCGATTTGGTGTGTGCAGAGAGCAGGATTGTGTTTACAAGCACACAAACGACGAAGCGAAAGAATGTAATATGTACAAACTTGGTTTCTGTCCAAATGGGCCTGATTGTCGATACAGGCATCAAAAGATGCCTGGTCCACCTCCACCTGTTGAAGAGGTTTTCCAAAAGACTCAACAGTTGGCTGCTGCCATGAATGATGCTTACCCAAACAGACATCCCCAGCACAAGCATAACAATTACCATCAATCAGATAGGACCTATTCTCAGCAGCCATTGGCAAGTGCTTCTCAGCGATTGCCTGGAAGTTCACCTGTACGTGGGGACCCAAAGAATCAGCAGAAACAACGGATACATCGTTTGCCCCAACATCAGGCCAATCAGAGTCAAGGCCAATCATTAAACCCCATGGAAAATGGATTATTGAGTCAACCTAACACAGTCTCTGCTGCAATGCCGCTTCCACAAGGACATTCTAGGTACTTTATTGTGAAGAGCAGCAATAGAGAAAATTTGGAACTCTCTGTACAACAAGGAATGTGGGCAACTCAACGAAATAATGAGGCAAAACTGAATGAAGCTTTTGATTCATGTGATAATGTAATTCTTATATTCTCAATCAACAGGACCCGCCATTTTCAGGGTTGTGCAAAGATGATGTCTAAAATTGGTGGATTTGTCGGTGGAGGGGGTTGGAAGTATGCACATGGGACTGCACATTATGGTCGAAACTTTAGTCTTAAGTGGTTGAAGCTTTGTGAGTTGACATTTCAAAAGACTCGGCATTTGAGGAATCCATACAATGAAAATTTACCTGTGAAGATCAGCCGAGATTGTCAAGAACTAGAGAATTCTATTGGGGAGCAGCTAGCTTCTCTGCTCTATTTGGAGCCAGACAGTGAACTTATGGCCACGGCATGTGCTGTTGAATCCAAACGCAAAGA

Fln Alignment:

sp_v1.1_unigene667___AAMPLPQGHSRYFIVKSSNRENLELSVQQGMWATQRNNEAKLNEAFD-----------SCDNVILIFSINRTRHFQGCAKMMSKIXXXXXXXXWKYAHGTAHYGRNFSLKWLKLCELTFQKTRHLRNPYNENLPVKISRDCQELENSIGEQLASL
D5A886_____________ADFPTKYDNALFFVIKSYSEDDVHKSIKYNVWASTPNGNKRLDAAYQVAKERSGGNPGSCP-VFLFFSVNASGQFCGVAEMVSSVDFHTSMNFWQ----QDKWNGFFPVKWHIIKDVPNSQFRHIILENNDHKPVTNSRDTQEIKFTQGIEMLNI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1037	85			14	0.993533
1081	87		12		0.992554
1104	87			12	0.992554
1107	87	12			0.992554
1114	12	87			0.992554
1116	12			87	0.992554
1117			12	87	0.992554
1118	87		12		0.992554
1121	14	71			0.984337
1135	16	83			0.994512
1136	83	16			0.994512
1150	83			16	0.994512
1152	16			83	0.994512
1520	16			83	0.994512
1522	83		16		0.994512
1523			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain