SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene663

Length: 1106 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene663 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SMC_N multi-domain protein	-	-	3.0e-13	19%
FL-Next	Isoform 2 of Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP	-	-	0.0	21%
Blast2go	at4g32190-like protein	-	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FHN8-2

Fln msg: Distance to subject end: 287 aas, your sequence is shorter than subject: 368 - 1259

Fln protein: EEQKLKVSETTLEDRVVAWYMAQQELKNLAQEVSKYRVNSLATEEELKRARNLLAAVKGELTTSQKSLESSRQRLEAQQAQLELQRMELSKQKNKIQSHVTSLRHAQLEVGSEREKLRLAETHCKELEHHLANERCTVDELQKELHREKSSLNQAIEEVRSLKKELEQRNAAFSDAQTLLQLKESELVAARLEMQCLKSDISFVQHNLSDRDKDLMVAQNNLKNLQEEIFQFKSLMRDKEDQLLKATIMLKDKDEQVKTMQLNLNDNKLKLSEATSVVEHIADLTRILVESAKEGNVLTMDEDSLIMQSNCELFATNRALLETKLQLQHIQEMSVEDLRKQNQSEAELKAMKECLREKEKELLEAHRA

Protein Length: 369

Fln nts: GAGGAACAGAAGCTAAAGGTCTCTGAGACCACTTTGGAAGACCGTGTGGTGGCATGGTATATGGCTCAGCAGGAACTCAAAAATTTGGCACAGGAGGTTTCCAAATACAGAGTCAATTCTTTGGCTACTGAGGAAGAACTGAAAAGAGCAAGAAACCTTCTTGCTGCAGTAAAGGGAGAGCTGACCACTTCTCAGAAATCCCTTGAATCTTCTCGGCAGAGACTTGAGGCTCAACAAGCCCAACTTGAATTACAGCGCATGGAGCTTTCAAAACAGAAAAATAAAATTCAATCGCATGTGACAAGTTTGAGACATGCTCAATTAGAAGTTGGAAGTGAGAGGGAAAAACTGAGGCTTGCAGAGACTCATTGCAAGGAGCTGGAACATCATCTGGCTAATGAGAGATGTACTGTGGATGAACTGCAGAAAGAGTTACATAGAGAGAAATCCTCTTTAAACCAAGCTATTGAAGAAGTTAGGTCTCTCAAGAAGGAATTGGAACAAAGGAATGCAGCTTTTAGTGATGCTCAAACTTTATTGCAGCTCAAGGAATCAGAACTTGTTGCAGCCAGGCTCGAAATGCAGTGCTTGAAGTCTGATATTTCATTTGTTCAACATAACTTAAGTGACAGAGATAAGGATCTCATGGTTGCACAGAATAATCTAAAAAACCTACAAGAAGAAATTTTCCAGTTCAAGTCCCTTATGAGAGACAAAGAAGACCAACTTCTCAAGGCAACCATTATGTTGAAAGACAAAGACGAGCAAGTAAAGACGATGCAACTTAATTTAAATGATAACAAATTGAAGTTGTCTGAAGCCACTTCAGTCGTTGAACATATTGCAGACCTCACAAGAATTCTGGTAGAGTCAGCCAAAGAAGGGAACGTTTTGACAATGGATGAAGATTCATTGATAATGCAAAGCAACTGTGAACTCTTTGCAACGAACCGAGCATTGCTAGAAACAAAATTGCAGCTCCAGCATATTCAGGAGATGTCAGTCGAGGATTTAAGGAAGCAGAACCAATCAGAAGCTGAGCTTAAAGCTATGAAAGAGTGTCTTAGAGAAAAGGAAAAAGAGCTTTTGGAGGCCCACAGAGCCTT

Fln Alignment:

sp_v1.1_unigene663___QKLKVSETTLEDRVVAWYMAQQELKNLAQEVSKYRVNSLATEEELKRARNLLAAVKG---ELTTSQKSLESSXXXXXXXXXXXXXXRMELSKQKNKIQSHVTSLRHAQLEV-------GSEREKLRLAETH-------CKELEHHLANERCTVDELQKELHREKSSLNQAIEEVRSLKKELEQRNAAFSDAQTLLQLKESELVAARLEMQCLKSDISFVQHNLSDRDKDLMVAQNNLKNLQEEIFQFKSLMRDKEDQLLKATIMLKDKDEQVKTMQLNLNDNKLKLSEATSVVEHIADLTRI
Q9FHN8-2___________QNFEVYEKRLQDLSKAYEESQKKIEKLMDEQQEKNQQEVTLREELEAIHNGLELERRKLLEVTLDRDKLRSL-----------------CDEKGTTIQSLMSELRGMEARLAKSGNTKSSKETKSELAEMNNQILYKIQKELEVRNKELHVAVDN-SKRLLSENKILEQNLNIEKKKKEEVEIHQKRYEQEKKVLKLRVSEL---ENKLEVLAQDLDSAESTIESKNSDMLLLQNNLKEL-EELREMKEDIDRKNEQ---TAAILKMQGAQLAELEILYKEEQVLRKRYYNTIEDMKGKIRV

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
475	66		33		1.0
643	90		10		0.90298
645		11		88	0.923564
649		11		88	0.923564
650	11			88	0.923564
651	11		88		0.923564
654			11	88	0.923564
656	88	11			0.923564
658	88	11			0.923564
661		11	88		0.923564
680		28		71	1.0
682		28		71	1.0
683	28			71	1.0
685		83	16		0.994512
687	16		83		0.994512
788	80		20		0.995493
810		25		75	0.996473
821		25		50	0.995533
822		25	50	25	0.995533
823	50	25	25		0.995533
843		20	80		0.995493
845	80	20			0.995493
846	80			20	0.995493
851		80	20		0.995493
853	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain