SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene660

Length: 1932 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene660

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	potassium transporter	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 461 - 250

Fln protein: MGEAAFLSKHKWDLQRNFYKAIPEAVFWPVFIVATLASVVGSQAVISATFSIISQCSALSCFPRVKIIHTSNQIFGQIYIPEVNWILMCLCLAVTIGFRDTNLIGHAYGLAVVTVMFVTTCLMSLVIIIVWQKNILVALSFLVIFGSIELLYISTCLIKVPEGGWVPLALSLIFMAIMYVWHYGTLKKYEFDSQNKVSMKRILSLGPSLGMVRVPGIGLIYTDLVTGVPAIFGHFVTNLPAFHRVLVFVCIKSVQVPYVPSEERYLIGRIGPKEYRMFRCIVRYGYKDVHQENYDFENQIVQNISEFIQKDNEEDSLDYNTEMCSTARMAVFSTSTDSVMKIVLSDQENELSPVHKFHVRSSEIDSFTPRKKEVRFELLKSPDIDPRVRQELIDLVEAREAGVAYMLGHSHVKAKKSSSILKKFAIDIAYNFLRKNCRGPDVAFNIPHISLIEVGMIYYV*

Protein Length: 462

Fln nts: TACCCTTGCTTGATTCTTGCTTAC_-_ATGGGTGAGGCTGCTTTTCTGTCCAAACACAAGTGGGACCTTCAACGGAATTTCTACAAGGCCATCCCAGAAGCTGTATTCTGGCCAGTTTTCATTGTGGCTACTCTGGCATCCGTAGTGGGAAGTCAAGCAGTCATCTCAGCGACTTTCTCCATTATCAGTCAATGCTCAGCACTGAGTTGCTTTCCTCGAGTGAAGATTATCCACACCTCCAATCAAATATTTGGGCAAATATACATTCCGGAAGTAAACTGGATTCTCATGTGTCTATGTCTTGCAGTTACCATTGGTTTCCGAGACACAAATCTGATCGGCCATGCCTATGGCTTAGCTGTTGTTACTGTGATGTTTGTTACAACTTGCTTGATGTCTTTGGTGATCATCATTGTATGGCAGAAGAATATTCTTGTAGCGCTTTCCTTTTTGGTAATTTTTGGATCTATTGAACTCCTGTATATCTCAACGTGTCTGATCAAAGTTCCTGAAGGGGGATGGGTTCCGTTGGCACTCTCTTTAATTTTCATGGCAATCATGTATGTTTGGCATTATGGAACGTTGAAGAAGTACGAGTTTGATTCCCAGAACAAAGTTTCAATGAAAAGAATATTAAGTTTAGGGCCAAGTCTTGGGATGGTGCGTGTGCCTGGAATTGGGCTTATTTACACAGATCTAGTAACAGGAGTGCCTGCTATCTTTGGTCATTTTGTTACAAATTTACCAGCTTTTCACAGAGTGCTTGTGTTTGTGTGCATCAAGTCCGTTCAAGTTCCATATGTCCCATCTGAAGAGCGTTACCTGATAGGTAGAATAGGTCCAAAGGAATACCGGATGTTCAGGTGCATAGTGAGGTATGGTTACAAGGATGTTCATCAAGAGAACTATGACTTTGAGAATCAGATAGTTCAAAACATTAGCGAATTTATACAGAAGGACAATGAAGAGGATTCTCTTGATTATAACACTGAAATGTGTAGCACTGCTAGGATGGCAGTATTTAGTACATCAACTGATTCTGTGATGAAGATAGTTCTTTCAGATCAGGAGAATGAACTATCCCCAGTGCACAAGTTTCATGTTAGATCATCTGAGATAGATTCTTTTACACCAAGGAAAAAAGAAGTCAGGTTTGAGCTACTCAAGAGCCCTGATATAGATCCAAGAGTAAGACAAGAGCTTATAGATCTTGTTGAAGCCAGGGAAGCAGGTGTTGCATACATGTTAGGACACTCACATGTGAAAGCCAAAAAGTCATCCTCCATATTGAAGAAATTTGCCATTGATATTGCTTACAATTTTCTCCGCAAGAACTGCAGAGGTCCTGATGTTGCTTTCAACATTCCTCACATTTCTCTCATTGAGGTGGGGATGATCTACTATGTCTGA___TCAAAAGTAAAGACTGACAAAGAAACTTAACAAATCACAGAGTTCAAGTGATGCTCTGAAGTTTAAGTTACTCTGACCCGCAGGTCCTTTGTATGCTCAGAGCCATGATGTTGTAGACTCAAACTATTTTACTTGAAGACCACCTACATTAGAAAATTGTGGCCTCAAAGCATGCGCTCCAGTGCAACAGGCCAAAAACTGAACATAGTTAAAGTCCATAAGCTTAGCTTGATTGGATAAAGCTTGGGTTTTTATACTTGATAGAAGAAAAACTAAACATCATCCTTTCCTGCAGATCTGTTTGTCTCTTCCTGACAGGTATTTATTTATTGGTTGAGGGAGCTAGGGTTGAGTGGCAATTGTAACATAAATAGAAGGAAAATTAACAGCAATTTGTAGCCTGCAGCACAATGACGAGCCTCTCCACTGAAATATGGAAGGTCAATCCGTATTTTTGACACATGATGTGTGATGTTATTCAAAGAAAATTTTCTAATTTGGAAGGTTGAGTACATCTCAAGCTTG

Fln Alignment:

sp_v1.1_unigene660___IYTDLVTGVPAIFGHFVTNLPAFHRVLVFVCIKSVQVPYVPSEERYLIGRIGPKEYRMFRCIVRYGYKDVHQENYDFENQIVQNISEFIQKDNEEDSLDYNTEMCSTARMAVFSTSTDSVMKIV-LSDQENELSPVHKFHVRSSEIDSF----------TPRKKEVRFELLKSPDIDPRVRQELIDLVEAREAGVAYMLGHSHVKAKKSSSILKKFAIDIAYNFLRKNCRGPDVAFNIPHISLIEVGMIYYV
D5A8F8_____________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSC--SSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
1265	88		11		0.923564
1319		14		85	0.993533
1321	14			85	0.993533
1323		85	14		0.993533
1324			14	85	0.993533
1331			87	12	0.992554
1332	87		12		0.992554
1333	87		12		0.992554
1334		87	12		0.992554
1378		11		88	0.923564
1381			11	88	0.923564
1385		11	88		0.923564
1386			88	11	0.923564
1390		12	87		0.992554
1391			87	12	0.992554
1392	87		12		0.992554
1394		12	87		0.992554
1400		87		12	0.992554
1438	85		14		0.993533
1447		87		12	0.992554
1448	87		12		0.992554
1450	87		12		0.992554
1556		85		14	0.993533
1557	85		14		0.993533
1558			14	85	0.993533
1559			14	85	0.993533
1607	71		28		1.0
1708		12		87	0.992554
1711		12		87	0.992554
1712			12	87	0.992554
1715	12			87	0.992554
1721		87	12		0.992554
1725	87			12	0.992554
1728			87	12	0.992554
1729		12	87		0.992554
1788			90	10	0.90298
1791	88		11		0.923564
1792	88		11		0.923564
1884	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain