SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene610

Length: 2577 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene610
ATTGGGGATGCCCTTTAAGTTCCCTCTGAGAAAAGTCATATTTAAACTTGATTTTTCTCAGACAAATCATGGGATTATGTAAATTTCAATTGCAAACATTATTTACGAGACAAAGCAGAAAACGACACCTTGTCGAAGGGCATTCCGAGACAGCATTTGATTCCCTTTTCATGGCATTACAGACCCTTCAAGTTCGGATCTAGAGTTGCTGCTGGTTACTGGGTTGCTCTCGCTCTGCAAGGGGAGAGAACTTATCCACTCAAGCAGGAATCAGCATTGCTTCTATCCAGCAAACGAGATTTCTTCAGAACTAAGGTCAACTCAACTATGGCAGCTGCATTAGTCGAGGGAGCAACCAGTGATATGTTAGGTGATCCAGACTGGGCACTGAATATTGAACTTTGTGACATTGTCAATGGCGACCCACAACAAGCAAAGGATGTCCTTAAAGCTGTTAAGAAACGCCTTTTGAACAAGAACCCAAAGGTCCAGACACTTACTCTTGTGTTGTTAGAGTCATTGATGAAAAATTGCGGTGATACTATCCAATCACAAGTCATCCAGAGAGGAGTTCTACATGAAATGGTCAAGTTAGTAAAGAAAAAGCTCAATTTAGAAATAAGAGACAAAATATTGGACCTACTACACGAATGGCAAAAAACTTTTGGAGGACCACAAGGAAGGTTTCCACAATATCATCAAGCATGCCAAGACTTAATTCATGCAGGGATAAAGTTTCCACAGGATTTGGATAGATCTGCCGCGGTTTTGGAAACTCAACAATCGCTGCCAATTTCTTTACAATCTCAGTCTTCTGCTTCTCCAAATTATGGGGCCGAAGTTGTTGAGGGACCAGTTGCATCTGGTCTTCCAGGACTAAGCTTATTGGATATTCAAAAGGCAAGGAGTATTATGGATGTGTTAACGGAGATGCTGAATGCTCTAGATCCCAAAAACAAAGAGGGTGTGAAAGATGAAATAATTATGGATCTTGTTGAACAATGCTCTTTTAACAAGCAACAAGCAATGCAACTCGTCGTTACAACTTCTGATGAAGAGCTTCTTTGTCAGGCTCTTGCATTGAATGACGATCTACAACATGTTCTTGGTAAACATGATGCAATTGCTTCAGGATCATATGTCCCAACCAAGGAAATAAATGTTCCCGCACCTTCTGCGGTAAACATTAGCCATGAAGAAGATGAAGCAGAAGATGATGTAGAACAGCTATTTCGCCGGTCTTCAAAAGTCCGTGCACAATATGAAGGGAAGGCCAGTGTTAGCAAGAAAAACCATTCTACAACTCAACCACCACTGATTCCCCAACCACCAGATGTGACAAAGGCCAATAGTACTATTGCAAAGCCTATGCATATTGCAGATCTTCTCAGTAGTGATGGAGATGAGTCACCGTCTTCAAACACTACAGATCCTAGGACAGAATTCTCACCTGTTTTTCCACAGGCCACTCCAAATCCATTTAACAGACAGTCAATTTCTCAAGGGATCTCGACGAGAGCAGAACCATACCCATCGTCTTCTGAGTTGGGGGATCAAATTCACTCACATACAAATGGAATTTCGCCAAGTTCATACACCACCAAAGCTCAACAAAATGGAAATAAGCAACACTTGCAAACACAAGGACAAAGCATATTTGCAAATGAGGATGACAAGCTAGCAAGGAGTAGTATGGCAGAGCAGCAATCGGATCTGAGATATGATTTGGAACCACATGACTTGAAAGCACCGACACACAAAATTCCTGGCAACTTTCCACCCACCCCACAGCATATTGATGTTCCACAGATTCAAAATAGTCACAAAGGTCCTCCATTACATGGAAAGATTGCAATGCCCGCACTTCCCCCACCTCCGGCAAGATATACTGAAAGACAGCAATTTTTTCAGCAGCAACAAGCTTTGGCATCTGTACAGTTAAATAAAGGGTTTTCTGAGGCTGGAAATAATGACTTAACAGAAACGATGCATGAACTTTCACTGTAAAAATGGAACTTACTACACCTTGTATGGTTCACAGCAATCTTCAACTTCCAGCAACACCAAAAACAAATGTCTGAAGATTTGGCTGACTTGGTCAGAGCAAACAGTAAAGCATTATCTCACACTACAGGAAATTAGCAAATATCAGTTTCTTCCGTGATTTTGATGGGTATTTAAATTTTATATGTATTCTTGTAAATTGATACAATTGGTATTACCATGTCTAGACTCTACAGTATATCTGTCTAGGGTTGATATGTCTCGTATTCTAGATGATATTCCTTTATGTATTTTACTATTTTGAGGTTTCTGCATTGACAATGGATCCAAAAGAGACCAATATAAACTCATTAAAGAGAAGCTTCCATACAATGCTTTCCTCTTCACAGTATCCTTAAGTAATTTTGAGCTGACAGCTATAAAAACAAAAATCCAATTGCAGTGGTTCACCTAGTGAACTATAGACAAATCCACTGGTTTGACGTTCCCTTATGTATTTTATTATTTGAGGTGCCTGCACTGGCAGTGAATCCAGAAGAGATCAATTTAAACTCGTTAAAGAGAAGCTCCCAT

Ace file of the UniGene sp_v1.1_unigene610

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	54%

Source	InterPros	Term	Type	Identity
Blast2go	VHS	IPR002014	-	54%
Blast2go	GAT	IPR004152	-	54%
Blast2go	ENTH/VHS	IPR008942	-	54%
Blast2go	VHS subgroup	IPR018205	-	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG6

Fln msg:

Fln protein: MAAALVEGATSDMLGDPDWALNIELCDIVNGDPQQAKDVLKAVKKRLLNKNPKVQTLTLVLLESLMKNCGDTIQSQVIQRGVLHEMVKLVKKKLNLEIRDKILDLLHEWQKTFGGPQGRFPQYHQACQDLIHAGIKFPQDLDRSAAVLETQQSLPISLQSQSSASPNYGAEVVEGPVASGLPGLSLLDIQKARSIMDVLTEMLNALDPKNKEGVKDEIIMDLVEQCSFNKQQAMQLVVTTSDEELLCQALALNDDLQHVLGKHDAIASGSYVPTKEINVPAPSAVNISHEEDEAEDDVEQLFRRSSKVRAQYEGKASVSKKNHSTTQPPLIPQPPDVTKANSTIAKPMHIADLLSSDGDESPSSNTTDPRTEFSPVFPQATPNPFNRQSISQGISTRAEPYPSSSELGDQIHSHTNGISPSSYTTKAQQNGNKQHLQTQGQSIFANEDDKLARSSMAEQQSDLRYDLEPHDLKAPTHKIPGNFPPTPQHIDVPQIQNSHKGPPLHGKIAMPALPPPPARYTERQQFFQQQQALASVQLNKGFSEAGNNDLTETMHELSL*KWNLLHLVWFTAIFNFQQHQKQMSEDLADLVRANSKALSHTTGN*

Protein Length: 606

Fln nts: ATTGGGGATGCCCTTTAAGTTCCCTCTGAGAAAAGTCATATTTAAACTTGATTTTTCTCAGACAAATCATGGGATTATGTAAATTTCAATTGCAAACATTATTTACGAGACAAAGCAGAAAACGACACCTTGTCGAAGGGCATTCCGAGACAGCATTTGATTCCCTTTTCATGGCATTACAGACCCTTCAAGTTCGGATCTAGAGTTGCTGCTGGTTACTGGGTTGCTCTCGCTCTGCAAGGGGAGAGAACTTATCCACTCAAGCAGGAATCAGCATTGCTTCTATCCAGCAAACGAGATTTCTTCAGAACTAAGGTCAACTCAACT_-_ATGGCAGCTGCATTAGTCGAGGGAGCAACCAGTGATATGTTAGGTGATCCAGACTGGGCACTGAATATTGAACTTTGTGACATTGTCAATGGCGACCCACAACAAGCAAAGGATGTCCTTAAAGCTGTTAAGAAACGCCTTTTGAACAAGAACCCAAAGGTCCAGACACTTACTCTTGTGTTGTTAGAGTCATTGATGAAAAATTGCGGTGATACTATCCAATCACAAGTCATCCAGAGAGGAGTTCTACATGAAATGGTCAAGTTAGTAAAGAAAAAGCTCAATTTAGAAATAAGAGACAAAATATTGGACCTACTACACGAATGGCAAAAAACTTTTGGAGGACCACAAGGAAGGTTTCCACAATATCATCAAGCATGCCAAGACTTAATTCATGCAGGGATAAAGTTTCCACAGGATTTGGATAGATCTGCCGCGGTTTTGGAAACTCAACAATCGCTGCCAATTTCTTTACAATCTCAGTCTTCTGCTTCTCCAAATTATGGGGCCGAAGTTGTTGAGGGACCAGTTGCATCTGGTCTTCCAGGACTAAGCTTATTGGATATTCAAAAGGCAAGGAGTATTATGGATGTGTTAACGGAGATGCTGAATGCTCTAGATCCCAAAAACAAAGAGGGTGTGAAAGATGAAATAATTATGGATCTTGTTGAACAATGCTCTTTTAACAAGCAACAAGCAATGCAACTCGTCGTTACAACTTCTGATGAAGAGCTTCTTTGTCAGGCTCTTGCATTGAATGACGATCTACAACATGTTCTTGGTAAACATGATGCAATTGCTTCAGGATCATATGTCCCAACCAAGGAAATAAATGTTCCCGCACCTTCTGCGGTAAACATTAGCCATGAAGAAGATGAAGCAGAAGATGATGTAGAACAGCTATTTCGCCGGTCTTCAAAAGTCCGTGCACAATATGAAGGGAAGGCCAGTGTTAGCAAGAAAAACCATTCTACAACTCAACCACCACTGATTCCCCAACCACCAGATGTGACAAAGGCCAATAGTACTATTGCAAAGCCTATGCATATTGCAGATCTTCTCAGTAGTGATGGAGATGAGTCACCGTCTTCAAACACTACAGATCCTAGGACAGAATTCTCACCTGTTTTTCCACAGGCCACTCCAAATCCATTTAACAGACAGTCAATTTCTCAAGGGATCTCGACGAGAGCAGAACCATACCCATCGTCTTCTGAGTTGGGGGATCAAATTCACTCACATACAAATGGAATTTCGCCAAGTTCATACACCACCAAAGCTCAACAAAATGGAAATAAGCAACACTTGCAAACACAAGGACAAAGCATATTTGCAAATGAGGATGACAAGCTAGCAAGGAGTAGTATGGCAGAGCAGCAATCGGATCTGAGATATGATTTGGAACCACATGACTTGAAAGCACCGACACACAAAATTCCTGGCAACTTTCCACCCACCCCACAGCATATTGATGTTCCACAGATTCAAAATAGTCACAAAGGTCCTCCATTACATGGAAAGATTGCAATGCCCGCACTTCCCCCACCTCCGGCAAGATATACTGAAAGACAGCAATTTTTTCAGCAGCAACAAGCTTTGGCATCTGTACAGTTAAATAAAGGGTTTTCTGAGGCTGGAAATAATGACTTAACAGAAACGATGCATGAACTTTCACTGTAAAAATGGAACTTACTACACCTTGTATGGTTCACAGCAATCTTCAACTTCCAGCAACACCAAAAACAAATGTCTGAAGATTTGGCTGACTTGGTCAGAGCAAACAGTAAAGCATTATCTCACACTACAGGAAATTAG___CAAATATCAGTTTCTTCCGTGATTTTGATGGGTATTTAAATTTTATATGTATTCTTGTAAATTGATACAATTGGTATTACCATGTCTAGACTCTACAGTATATCTGTCTAGGGTTGATATGTCTCGTATTCTAGATGATATTCCTTTATGTATTTTACTATTTTGAGGTTTCTGCATTGACAATGGATCCAAAAGAGACCAATATAAACTCATTAAAGAGAAGCTTCCATACAATGCTTTCCTCTTCACAGTATCCTTAAGTAATTTTGAGCTGACAGCTATAAAAACAAAAATCCAATTGCAGTGGTTCACCTAGTGAACTATAGACAAATCCACTGGTTTGACGTTCCCTTATGTATTTTATTATTTGAGGTGCCTGCACTGGCAGTGAATCCAGAAGAGATCAATTTAAACTCGTTAAAGAGAAGCTCCCAT

Fln Alignment:

sp_v1.1_unigene610___MAAALVEGATSDMLGDPDWALNIELCDIVNGDPQQAKDVLKAVKKRLLNKNPKVQTLTLVLLESLMKNCGDTIQSQVIQRGVLHEMVKLVKKKLNLEIRDKILDLLHEWQKTFGGPQGRFPQYHQACQDLIHAGIKFPQDLDRSAAVLETXXXXXXXXXXXXXXXXNYGAEVVEGPVASGLPGLSLLDIQKARSIMDVLTEMLNALDPKNKEGVKDEIIMDLVEQCSFNKQQAMQLVVTTSDEELLCQALALNDDLQHVLGKHDAIASGSYVPTKEINVPAPSAVNISHEEDEAEDDVEQLFRRSSKVRAQYEGKASVSKKNHSTTQPPLIPQPPDVTKANSTIAKPMHIADLLSSDGDESPSSNTTDP---------RTEFSPVFPQATPNPFNRQSISQGISTRAEPYPSSSELGDQIHSHTNGISPSSYTTKAQQNGNKQHLQTQG----QSIFANEDDKLARSSMAEQQSDLRYDLEPHDLKAPTHKIPGNFPPTPQHI----DVPQIQNSHKGPPLHGKIAMPALPPPPARYTERXXXXXXXXALASVQLNKGFSEAGNNDLTETMHELSL*KWNLLHLVWFTAIFNFQ--------QHQKQMSEDLADLVRANSKALSHTTGN
B8LPG6_____________MASSLVERATSDMLIGPDWAMNIEICDIVSSDQGQAKDVVKAVKKRLVNKNSKVQLLSLTLLETLIKNCGDPVHLQVAERDVLHEMVKLVKKKADLHVKEKVLVLIDTWQEAFGRSGGRYPQYYAAYHELVRAGVRFPQRAESSAPIHTPPQTHPIVPYSQSYDSPEYGGEAAQSSMASDLPGLSLTEIQNARGLMDVLLEMLNALDPRAKEGIKQEVIVDLVEQCRSYKQRVVQLVNTTSDEELLCQGLALNDDLQRILGKHDAIASGLLVLPEKKRAPAP-FVDVNCEEDEMEDNLQQLARRSSKAH-------SLAK-----TQPATLLPPPPGLKINASTTKAEPSIDLLSGEDYKSPTDVTPTEVIPATGQSLQSLQSPLARQAATNSFSSLSSPEGI-LAAETYSSPPQLQQQPYLHPNG----SISGQALPSAQYGQLQSQGVRADQAGHSLQWTSPSGQSLSPPQQALIYGSEMQNMQVQAQRSPVSLPPAPWDTQAMENVPQMENRWQG-----------------NITPGQQHFQLQEVSAFGQFKPGYSIVAQDELMRGTQNLSLYDGRNINPYQMSSPYLQQSPVPSKQVKAEDKLFKDLVDLAKSKTKATSSNAGS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
544	66		33		0.997452
1005	66		33		1.0
1010		77	22		0.999999
1012		22		77	0.999999
1013	22			77	0.999999
1015	77	22			0.999999
1073	88			11	0.923564
1076	10	90			0.90298
1078		90	10		0.90298
1079			10	90	0.90298
1080			10	90	0.90298
1098	90		10		0.90298
1298	62		37		1.0
1580	88		11		0.923564
1609	88		11		0.923564
1630	88		11		0.923564
1747		23		76	1.0
2092	33			66	0.997452
2096		66	33		0.997452
2134	66		33		0.997452
2154	66		33		0.997452
2311			16	83	0.994512
2386		20		80	0.995493
2431	66		33		0.997452
2460		66		33	0.997452
2579		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain