SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene600

Length: 1402 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene600

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polcalcin Jun o, putative (EC:1.3.1.74); K13448 calcium-binding protein CML	-	-	6.0e-24	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	polcalcin	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	65%
Blast2go	cytoplasm	GO:0005737	Cellular Component	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	65%
Blast2go	EF-hand-like domain	IPR011992	-	65%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	65%
Blast2go	EF-hand	IPR018248	-	65%
Blast2go	EF-HAND 2	IPR018249	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTU8

Fln msg:

Fln protein: MKFVESKIKGLLRRKSKKSRSNGEGGSGEESTSSRSGSSHSLSSFSKSPVETPKSVLSYSAASSSCTLKMSVPQPNNSEIVVCLEDEKGKQTLATTNGKGKGFLLPTATSTGTDFMLPTATSGVDELREVFKVFDADGDGKITKSELGCVLRSLGDDLSEEELALMVQAADKDGDGCIDLQEFISLNTFDAADGTAIAACEGIFPATDDLKDAFRIFDADMDGKISAQELHKVLTSLGDAECTIDDCRQMIRGVDKDGDGFVDFQDFRRMMTTMC*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGTAATTCACTGTTTCTGCAATT_-_ATGAAGTTCGTGGAGAGTAAGATAAAGGGGTTGTTGAGGAGAAAATCGAAAAAGTCGAGATCCAATGGGGAAGGGGGATCCGGGGAGGAATCGACCTCATCACGTTCCGGATCTTCGCACTCGCTATCATCTTTCTCGAAGAGCCCCGTGGAAACCCCAAAGAGCGTTCTTTCTTACTCTGCTGCCTCCTCTTCGTGCACCCTCAAGATGTCGGTGCCCCAGCCCAACAACTCAGAGATAGTGGTTTGCCTGGAAGATGAAAAGGGGAAACAAACCCTGGCCACGACCAACGGTAAAGGCAAAGGTTTCCTGCTTCCCACGGCCACGAGCACCGGCACCGACTTCATGCTGCCCACGGCCACGAGCGGCGTGGACGAGCTGAGGGAGGTTTTCAAGGTATTTGACGCCGATGGCGACGGAAAGATCACGAAATCGGAGCTCGGCTGCGTCCTGCGGAGCCTGGGCGACGATCTTTCCGAGGAGGAGTTGGCCCTCATGGTTCAGGCCGCCGATAAAGACGGTGACGGCTGCATCGATCTTCAAGAATTCATCTCCCTCAACACTTTTGACGCGGCCGACGGTACCGCCATTGCCGCCTGCGAAGGCATATTCCCCGCCACGGATGACCTTAAGGACGCGTTTCGCATCTTTGACGCCGACATGGACGGAAAAATTTCGGCGCAAGAACTTCACAAGGTCCTTACAAGCCTCGGAGACGCAGAGTGCACCATTGACGATTGCCGTCAGATGATCAGAGGAGTCGACAAGGACGGCGATGGCTTCGTCGATTTTCAAGATTTCCGGAGGATGATGACGACGATGTGCTGA___GATTAGGGTTCTGTAGCGTATTTTTGGGGGTTTTTACAGATCAGATCTTGGTTTCTTGAAATGGTGTCTAGATGAGCTTGCAGTACCATATACCTAGCAGCACCATTCAATCAATCAATCGTTGCTGCAGGAGAAATCGAAGCCAGAGCTGGAAGCCGAAACGTAGGGCTAAGCAATAAGTATCATCAACAATTTGGATATTAGGGGGAGCGGGCACCCCGGCCACAGCCACTCTTAGGCTTTTATTTTGCGTTGCGTGGCGAGGCGTAGATGCTCTTCTAGCAGTTCACTCGTGTGAAGCAAGTAGGGTCGTTGTCATAATGAAATGAAATAAGCCCGGCTATGCTTTCATATAAATGTATTATTAAATAATATAATATTGTGATAGGTAGTAGTATTGTGCGACTTGAATCATTATCTATTTTCTGTACCGTGCTTGGCACACAATCAATGGAATCGGTGCCTTCTCTTTCTCAAGAAAATAGTGTCTGTCTATATATAAATGAATGATTATTTTGCATCCA

Fln Alignment:

sp_v1.1_unigene600___TLKMSVPQPNNSEIVVCLEDEKGKQTLATTNGKGKGFLLPTATSTGTDFMLPTATSGVDELREVFKVFDADGDGKITKSELGCVLRSLGDDLSEEELALMVQAADKDGDGCIDLQEFISLNTFDAADGTAIAACEGIFPATDDLKDAFRIFDADMDGKISAQELHKVLTSLGDAECTIDDCRQMIXXXXXXXXXXXXXXXXXXMMTTMC
A9NTU8_____________TFKESAPRPKTGEIV-SLEEEKGKQALGTSNGNG--------------FLLPTATNGVDELREVFKVFDADGDGKITITELGCVLRSLGDDLSEEELALMVQAADKDGDGSIDLDEFISLNT-AAADAAEFSASAGVFPATDDLHDAFRIFDADKDGKISAQELHRVLTSLGDAECTIDDCRQMIRGVDKNGDGYVDFQDFSTMMTTMC

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1346	26	73		1.0
1364	10		90	0.90298
1368	14	85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
985	998	TCAA TCAA TCAA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain