SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene599

Length: 1993 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene599
ATGGGGATCCTTTCAACTATTCGGGCAAACAGGATGGATGTGAACATATTGACAATGTTCGTCACAGTCTCTGCTCTTGCTCTAGCATGTTCTCTGTGGCTAGCTAGTTATCTAAGAAACTGGNGAAAGAAGGGTGTGTATCCACCAGTGGTGGGTACAATGCTGAATCATGCCATCAATTTTGAACGCCTGCATGACTACCATACTGATCAAGCTCAGCGTTACAAGACTTTCAGAGTTGTGTATCCCACTTGCAGCTATGTCTTCACCACAGATCCAGTCAATGTAGAGCATATTCTCAAAACCAACTTTGCCAATTATGACAAGGGCACCTTCAATTATGACATCATGAAAGATCTTCTAGGTGATGGTATCTTCAATGTTGATGGAGATAAATGGAGACAACAGAGAAAACTGGCAAGCTCAGAGTTCGCATCTAAAGTGTTAAAGGACTTTAGTAGTGGTGTGTTCTGTAACAATGCAGCGAAGCTTGCCAACATTCTGGCACAGGCTGCTAAACTAAATCTAAGTGTGGAGATGCAGGATCTGTTCATGAGGTCATCGTTAGATTCAATCTGTAAAGTGGTGTTCGGGATTGATATAAACAGCTTATCAAGTTCTAAAGCCGAGTCAGGGCCAGAGGCTTCTTTCGCAAAGGCTTTTGATGTAGCCAATGCCATGGTATTCCATCGCCATATGGTTGGCAGCTTTTGGAAAGTTCAGAGATTTTTCAATGTGGGTTCAGAAGCCATCCTGAGGGAAAACATCAAAATGGTGGATGACTTCCTCTACAAAGTTATTCATTTCAGAAGACAGGAGATATTCTCTGCTGAAAAGGAAAATGTAAGACCAGATATTCTGTCTCGCTATATCATCATAAGTGACAAGGAGACAGATGGAAAGGTTTCTGATAAATATCTACGTGATGTTATTCTCAATTTCATGGTTGCTGCTCGTGACACAACAGCCATTGCATTGTCATGGTTCATCTACATGCTCTGCAAGCATCAGCATGTACAAGAAAAGCTCCTTGAAGAAATAATTTCCAGTACCAGCGTACATGAGGATCAATATAGTACAGAATGCAATGATATAGCCAGCTTCGCCCAAAGTCTAACAGATGAAGCACTGGGTAAGATGCATTATCTTCATGCATCTTTGTCTGAAACTCTCCGCTTATATCCAGCCCTTCCTGTGGATGGAAAGTACGTAGTTAATGAGGATACTCTTCCAGATGGATTCAAGGTGAAGAAAGGCGATTCTGTGAATTTTTTGCCTTATGCTATGGGGAGAATGTCATACCTATGGGGGGACGATGCAAAGGAGTTCAAGCCAGAAAGATGGATTCAGGATGGGGTATTCCATCCCAAATCTCCCTTCAAGTTCCCTGCATTTCAGGCCGGACCTCGAACTTGTCTTGGGAAGGATTTTGCATACCTACAAATGAAAATTGTTGCTGCAGTTCTCGTCCGTTTTTTCAAATTTGAAGCTGTGAAAACCAAGGAAGTCAGATATAGAACTATGCTTACACTCCATATGAATGAAGATGGATTGAATGTGCAAGTCACTCCCAGATTGGATTGTGACTGAAACCCCTTGCAAGAATATTTGGGCATTAGTTGTTGTTGAAGAAACATAAGTGTGATGCTTTGAAATGTGTTGGGAGATAAAATATTTCTTGTAATTAGGAGGATTTTCCAGGTTGTCAAAGGCAAGTACCTCAATGGTTGATGTTAATGCAGATTTCAGTCAGTATATAGAAAGTTGCATCCTTGGGTTTTTGCAGCAGAGAATGGCAGAAAAGCAAAAAAATCTGTGATAATAGAACCTGTAAAAAGTTGTAGTTACAGCTGCATCTTTGTACGTTGTTGAATTCCATTCATAATTCCATTGAAATTTGTGTTTCAGTATGTTTTATAATAAAATAGTTGCTTTCCAGAATGCTTTTGTGCAGTTCCCATGGATTCTGACTGTAATTCTTCCACATCAACAT

Ace file of the UniGene sp_v1.1_unigene599

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	92%
FL-Next	sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	cytochrome p450	-	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK3

Fln msg:

Fln protein: MGILSTIRANRMDVNILTMFVTVSALALACSLWLASYLRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSSGVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRENIKMVDDFLYKVIHFRRQEIFSAEKENVRPDILSRYIIISDKETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDAKEFKPERWIQDGVFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRLDCD*

Protein Length: 531

Fln nts: _-_ATGGGGATCCTTTCAACTATTCGGGCAAACAGGATGGATGTGAACATATTGACAATGTTCGTCACAGTCTCTGCTCTTGCTCTAGCATGTTCTCTGTGGCTAGCTAGTTATCTAAGAAACTGGaGAAAGAAGGGTGTGTATCCACCAGTGGTGGGTACAATGCTGAATCATGCCATCAATTTTGAACGCCTGCATGACTACCATACTGATCAAGCTCAGCGTTACAAGACTTTCAGAGTTGTGTATCCCACTTGCAGCTATGTCTTCACCACAGATCCAGTCAATGTAGAGCATATTCTCAAAACCAACTTTGCCAATTATGACAAGGGCACCTTCAATTATGACATCATGAAAGATCTTCTAGGTGATGGTATCTTCAATGTTGATGGAGATAAATGGAGACAACAGAGAAAACTGGCAAGCTCAGAGTTCGCATCTAAAGTGTTAAAGGACTTTAGTAGTGGTGTGTTCTGTAACAATGCAGCGAAGCTTGCCAACATTCTGGCACAGGCTGCTAAACTAAATCTAAGTGTGGAGATGCAGGATCTGTTCATGAGGTCATCGTTAGATTCAATCTGTAAAGTGGTGTTCGGGATTGATATAAACAGCTTATCAAGTTCTAAAGCCGAGTCAGGGCCAGAGGCTTCTTTCGCAAAGGCTTTTGATGTAGCCAATGCCATGGTATTCCATCGCCATATGGTTGGCAGCTTTTGGAAAGTTCAGAGATTTTTCAATGTGGGTTCAGAAGCCATCCTGAGGGAAAACATCAAAATGGTGGATGACTTCCTCTACAAAGTTATTCATTTCAGAAGACAGGAGATATTCTCTGCTGAAAAGGAAAATGTAAGACCAGATATTCTGTCTCGCTATATCATCATAAGTGACAAGGAGACAGATGGAAAGGTTTCTGATAAATATCTACGTGATGTTATTCTCAATTTCATGGTTGCTGCTCGTGACACAACAGCCATTGCATTGTCATGGTTCATCTACATGCTCTGCAAGCATCAGCATGTACAAGAAAAGCTCCTTGAAGAAATAATTTCCAGTACCAGCGTACATGAGGATCAATATAGTACAGAATGCAATGATATAGCCAGCTTCGCCCAAAGTCTAACAGATGAAGCACTGGGTAAGATGCATTATCTTCATGCATCTTTGTCTGAAACTCTCCGCTTATATCCAGCCCTTCCTGTGGATGGAAAGTACGTAGTTAATGAGGATACTCTTCCAGATGGATTCAAGGTGAAGAAAGGCGATTCTGTGAATTTTTTGCCTTATGCTATGGGGAGAATGTCATACCTATGGGGGGACGATGCAAAGGAGTTCAAGCCAGAAAGATGGATTCAGGATGGGGTATTCCATCCCAAATCTCCCTTCAAGTTCCCTGCATTTCAGGCCGGACCTCGAACTTGTCTTGGGAAGGATTTTGCATACCTACAAATGAAAATTGTTGCTGCAGTTCTCGTCCGTTTTTTCAAATTTGAAGCTGTGAAAACCAAGGAAGTCAGATATAGAACTATGCTTACACTCCATATGAATGAAGATGGATTGAATGTGCAAGTCACTCCCAGATTGGATTGTGACTGA___AACCCCTTGCAAGAATATTTGGGCATTAGTTGTTGTTGAAGAAACATAAGTGTGATGCTTTGAAATGTGTTGGGAGATAAAATATTTCTTGTAATTAGGAGGATTTTCCAGGTTGTCAAAGGCAAGTACCTCAATGGTTGATGTTAATGCAGATTTCAGTCAGTATATAGAAAGTTGCATCCTTGGGTTTTTGCAGCAGAGAATGGCAGAAAAGCAAAAAAATCTGTGATAATAGAACCTGTAAAAAGTTGTAGTTACAGCTGCATCTTTGTACGTTGTTGAATTCCATTCATAATTCCATTGAAATTTGTGTTTCAGTATGTTTTATAATAAAATAGTTGCTTTCCAGAATGCTTTTGTGCAGTTCCCATGGATTCTGACTGTAATTCTTCCACATCAACAT

Fln Alignment:

sp_v1.1_unigene599___MDVNILTMFVTVXXXXXXXXXXXXXYLRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSSGVFCXXXXXXXXXXXXXXXXXXSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRENIKMVDDFLYKVIHFRRQEIFSAEKENVRPDILSRYIIISDKETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDAKEFKPERWIQDGVFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRLDCD
Q50EK3_____________MDVNILTMFVTVSALALACSLWIASYLRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSSGVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVIHFRRQEMFSAEKENVRPDILSRYIIISDKETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDAKEFKPERWIQDGIFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRLNSD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
125	33	66			1.0
781		25		75	1.0
823	87		12		0.992554
951	20	80			0.995493
954		80	20		0.995493
1105		90		10	0.90298
1258		87	12		0.992554
1292	85		14		0.993533
1304	12	87			0.992554
1306	87		12		0.992554
1307			12	87	0.992554
1347			14	85	0.993533
1593	88		11		0.923564
1747		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain