SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene598

Length: 1588 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene598

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ketopantoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase.	EC:2.1.2.11	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	3-methyl-2-oxobutanoate hydroxymethyltransferase.	EC:2.1.2.11	-	0.0	71%

Source	KEGGs	Term	Identity
AutoFact	Pantothenate and CoA biosynthesis	00770	71%
AutoFact	Metabolic pathways	01100	71%
AutoFact	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	Identity
Blast2go	pantothenate biosynthetic process	GO:0015940	Biological Process	81%
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	GO:0003864	Molecular Function	81%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	81%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ketopantoate hydroxymethyltransferase	IPR003700	-	0.0	81%
Blast2go	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2B1

Fln msg:

Fln protein: MSFLLRHGFTNSWQPKGSWITMLKRVSHHFHNNYKFGPSPLPRLLDVRGMSNLPEKVVYGGPKSQSPWKRITLNHLATKYHKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTLDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGAMDAIKLEGGTPSRVIAAKSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAITSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAINEALCKYREEVVSQKFPSAAHTPYRIDQSSVETFISELSKRGLGKAAEAAAAAAENDNKSGEPRISTLPD*

Protein Length: 387

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTAGTCGTCGTGACCTTGGCTGTCACTCA_-_ATGTCATTTCTTCTTCGTCATGGTTTTACTAATTCTTGGCAACCAAAAGGATCATGGATAACGATGTTAAAGAGGGTTTCTCACCATTTTCACAACAATTACAAGTTTGGGCCTTCACCTTTGCCAAGGCTGTTGGATGTGCGTGGAATGTCTAATCTTCCAGAAAAGGTTGTCTATGGAGGACCTAAGTCTCAATCTCCCTGGAAAAGGATCACTTTAAACCATCTTGCTACTAAATATCACAAAGGGGAGCCCATAACAATGGTGACTGCCTATGATTATCCATCGGCAGTTCATGTAGACAATGCTGGCATTGATATCTGCTTAGTAGGGGATTCAGTTGGAATGGTGGTGCATGGACATGACACAACCTTACCTGTCACCTTGGATGATATGCTGCTTCATTGTCGTGCTGTATCCCGTGGAGCATCTAGATCTCTTCTTGTTGGTGATTTGCCTTTTGGAAGCTATGAAGAAAGCAAGGAGCAGGCAGTTGCAAGTGCAACTCGACTATTGAAGGAGGGGGCCATGGATGCAATAAAGCTTGAAGGGGGTACACCATCTAGGGTCATAGCAGCAAAATCTATAGTTGAGGCAGGCATTGCAGTCATTGGACATGTTGGGTTGACTCCTCAGGCGATAAGTGTGCTAGGTGGCTTTAGGCCACAGGGTAGAAATGCTGCCAGTGCGACAAAGGTTCTGGAGAGTGCGTTGGCTTTACAGGATGCAGGTTGTTTTGCTATTGTACTAGAGTGTGTGCCTTCTCCAGTCGCAGCTGCTATTACATCTTCTCTTCAAATTCCTACCATCGGAATTGGAGCAGGGCCTAATTGTAGTGGCCAGGTCTTAGTTTATCATGACTTGCTGCAGATGACACAACATCCACACCATGCCCAGGTTACACCCAAGTTCTGCAAGGCCTATGGGAACATAGGAATTGCTATCAATGAAGCATTGTGCAAGTACAGAGAAGAGGTGGTTTCCCAGAAGTTTCCATCTGCTGCGCATACTCCTTATCGAATTGACCAATCTAGTGTTGAAACTTTTATTTCTGAACTTAGTAAGAGAGGATTGGGGAAAGCAGCGGAGGCAGCTGCTGCAGCCGCTGAGAATGACAATAAATCTGGAGAACCAAGGATCAGTACACTTCCAGACTAG___ATTAGCATGAATGACCTTATTATTGTGTTTTGTTTGAAAAGAGAGGACTGGGCAAAATAACAGTGATAGCTGATGCAACTGCTTAGAATGATGATAAGGCCGTTCAGCCACTAACCGATATTCTTGAATCTTCTAAAACGAAATCCCAGAGAATAAATTACATTTTCGCTGCCAATTTTGCACCTAAGTAGCAGTTTATTCTGCCCCTTTTCAAAATATCTAAATACATTATCAAGCTGCAATAGAGATTACATCCACTTGGAAAATTCCAGATTGAAGCAGCAAGGTTACTGCTTATGTAATAACATGAATTGTTCGGATTTTAACTAGTAATAGCTCCCCCTGAATATTTGCATGTAATTTAATTTGGCAAGT

Fln Alignment:

sp_v1.1_unigene598___SMSFLLRHGFTNSWQPKGSWITMLKRVSHHF---HNNYKFGPSPLPRLLDVRGMSNLPEKVVYGGPKSQSPWKRITLNHLATKYHKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTLDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGAMDAIKLEGGTPSRVIAAKSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAITSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAINEALCKYREEVVSQKFPSAAHTPYRIDQSSVETFISELSKRGLGKXXXXXXXXXXNDNKSGEPRISTLPD
A9P2B1_____________STSFMARH----LWQSKGSWITMLRRGSHCFQIPYHNYKFELSSLPRMLDVRGMSNLPEKSVYGGPKSQSPWKRITLNHLAAKYDKGEPITMVTAYDYPSAVHVDNAGIDICLVGDSVGMVVHGHDTTLPVTMDDMLLHCRAVSRGASRSLLVGDLPFGSYEESKEQAVASATRLLKEGGMDAIKLEGGTPSRVIAARSIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNAASATKVLESALALQDAGCFAIVLECVPSPVAAAVTSSLQIPTIGIGAGPNCSGQVLVYHDLLQMTQHPHHAQVTPKFCKAYGNIGIAVNEALCKYREEVVSQKFPSAAYTPYRIDQSSVETFIAELSKRGLGKAAQAAAAAAENDKKSGEPRISTLPD

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
420		12		87	0.992554
422	87			12	0.992554
424	87		12		0.992554
425		87		12	0.992554
426	87		12		0.992554
432	87		12		0.992554
433		87	12		0.992554
447		14		85	0.993533
477	42	57			1.0
584		50	33		1.0
585		50		50	1.0
600	40		60		1.0
745		11	88		0.923564
747		33	55	11	1.0
748	88			11	0.923564
749		87	12		0.992554
750	87	12			0.992554
756		12		87	0.992554
764			88	11	0.923564
765			11	88	0.923564
767		88	11		0.923564
858		26		73	1.0
933	50		44	5	1.0
1037		33		66	1.0
1099	83			16	0.994512
1122			42	57	1.0
1496		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain