SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene590

Length: 2539 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene590
CGTCGTGACCTTGGCTGTCACTCAATGGACAGGGACAAGCTCGTAATTTAATACGCTCTCCAGGAAAGAAATCTCCTGTCATAACATTGGAGGCGAACTTTCGATCCAATTCACATGTTAGTGTGCTGGGTAATTCTAATGCTATGGGAGCCTTGCCCTCTTTACATAACCATATAGCAGTGTCAGGGCATCCAAATGGGCAGGCACATTCTGGTAATTCAAATCACTTTCCAGGAATGAAATTTCCTGTCATAACATCTGAAGGTAACTTTCCAGCGCATTCACATTTTAGTGCATTGGAAAATACTAATCCTATGGGGACTCTATCCTCTTTACAACACTCTATGAATGTTCACTATAATAATGCTAAGCAGATTCCAACTGACCCCAATTCTTCTATCAACCCATCTATGAAGTTCAGCTCATTTCCTCCTCCTCACGGGAAAGGTTATGGAGCTGAAAGAAATCCATTTCATCCTAAAGTGCAGCCAGATATTTTTCCTAACCCAATGCCTAATCTTCGTCCACCTATTACAAGTAGTTTATCTATGGAGAACCTTCCCGTATCAAGGACAGCCACCTCTTTTGACTCGGGGACTATACAACAAAGTCATAATGTACAAGGTGGATGTTATGTTTCAAATCAAATGCATCAAAAAATTTCTCCAGAACAGACACCTACTAATCCAGGAAATTTAAATCTAAACACCTCTGCTCAGGTGCATCCAATAGGAAGATGGCTGCTACCTCCAGAGCATAACGATACTGGGGCTCAAATAAGGATTATTTTGCAGGCCATAGAGACATTGAAACAGAATATGATGGTACCTTCAATAGGTAATATTGAAGATTGCATAAAATATCAAGAGATGCATATTTCTAATTTTGACATCCATGAGTTATTGGGGAAGGCTGTTGAGCAAAAGGAAATTGTAATAATGAGGGCTGGCGGAGCATCCCCGTTATATCTTCCACGTGCAACTAGTCTTTGGAAATGTGTGGATCCTTGTAATATGCATGATAACTATCCCAAGGAAGCCTGGGAGGAGTTTCATAAATATCTTTCAAGTTTTGAAGGACGTGACACAATAATGAAATCAGAGAGGCGGTATCATGCAGCTTTAATGTTGAAGTCATGTTGTTTGAAAAATCTTAAAATCGGAGAAATTATACATATGCTGCAGCTGGCAATCGATAAGAGACGGTGGCTATCCCATCATCAGTCAGGGTGGCAGCCCTTATCTATTACAACTTACAGTAGACCCCTGTGACAGATTTGGGACTTCAAGTGTGAATCCTGGGAGTCATTTTACATTGCAGGCATACATAGCAAATACAGAAGTATATTTTCTACATTTACATATAATATATGTAGATACACTACATATATGTAGAATGTTCAATATCTATGCAGAATGCTTGGATTATTTTTCTGATAGGCCCAAGCTGAGGAGTTTAGTTATAAGTTGGTATGTAGTATTGGCAAATTCATTCTGCTCCCAGAAGCACAGTATGCGGGACTCTGGCTGGTATACATCAGGGTGATCAAGGTTAGGCCATACTTTTGCTTATTTTAATCCAGAGCCTAAATCATGGCCTTGGTTAGTTTAACATAACTTGTCTACATTTCTTGCAATGTAATCGTTCATTTTATAGCTTGTAGTTCCTTCAAACATATCAACAAATAGAGTGCAGTTAGACAAAATGCCTCGTCTTCAATAGTATTTGGGAATGGTGTACGACTTAACCAGAGTTCTAAGGTATTGCTTGAGATTTCTGTGAATATGACTATTGGTGTCATCTATCTGGCTTTTGCCGACTGTCTGGGAATATCTGGGATCTGCAACATTATAACAGTGAAAATAAAATCCTGCACTGATCTTCTAGATGCAGAACGTGTGGACAACGGGATGTATAAAGATGCTGCCACTATGAAGAAGCTGGCTATCATCTAAGAAGTGGATTATCATGCAGTGTACAATGCTTGGTTGTGGATGCCAGGTAGAATTCCAGGAGGCTGAAGTAGAGGAATTCATTCAGCTCCTGCAATGAAGCATTATCATTGTTGCTCCCATTATTTGCCTTTCAGTGGTTTGCTGGAAGACAGATGCGATATTGTTTGATTCAATCAATGTATGGGTGTGTTAAGGAAAAACTAGTTAAAACTGTTCTGTTCCAGTCTTGACATCAGCTGGATATGGTCTTTATATATTAGTGCTGTGGTCATTTCATTGCAAAATGATGGTAACTGGTTGCATGATCATCACAGTTTAGTAGTAGTATTGTAATTTAGCTTGTGTTGATGAAGCTTCAATACCAGAAATTACTATCTTTCAGTTTGCCAGTGAGAATATATAACTGGCTTATATCAGTTTTGTATTGTATCTGCCATTAGCAGGGGCTCATGTGAATCTCGGAGGGACTGCTTACCAAAGTCTCCTGGTGATAAACTTATCATACTTTTATGCTGAGTTGTTTCTTTAATTAAGTTGTAGCTTGAACCTGTTGAATTTTAAACGCTATACAATGGCACCTTACA

Ace file of the UniGene sp_v1.1_unigene590

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFQ6_RICCO	-	-	8.0e-32	30%
FL-Next	tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	30%
Blast2go	nucleic acid binding	-	-	1.54491e-31	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RFQ6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 423 - 703

Fln protein: S*PWLSLNGQGQARNLIRSPGKKSPVITLEANFRSNSHVSVLGNSNAMGALPSLHNHIAVSGHPNGQAHSGNSNHFPGMKFPVITSEGNFPAHSHFSALENTNPMGTLSSLQHSMNVHYNNAKQIPTDPNSSINPSMKFSSFPPPHGKGYGAERNPFHPKVQPDIFPNPMPNLRPPITSSLSMENLPVSRTATSFDSGTIQQSHNVQGGCYVSNQMHQKISPEQTPTNPGNLNLNTSAQVHPIGRWLLPPEHNDTGAQIRIILQAIETLKQNMMVPSIGNIEDCIKYQEMHISNFDIHELLGKAVEQKEIVIMRAGGASPLYLPRATSLWKCVDPCNMHDNYPKEAWEEFHKYLSSFEGRDTIMKSERRYHAALMLKSCCLKNLKIGEIIHMLQLAIDKRRWLSHHQSGWQPLSITTYSRPL*

Protein Length: 424

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGACAGGGACAAGCTCGTAATTTAATACGCTCTCCAGGAAAGAAATCTCCTGTCATAACATTGGAGGCGAACTTTCGATCCAATTCACATGTTAGTGTGCTGGGTAATTCTAATGCTATGGGAGCCTTGCCCTCTTTACATAACCATATAGCAGTGTCAGGGCATCCAAATGGGCAGGCACATTCTGGTAATTCAAATCACTTTCCAGGAATGAAATTTCCTGTCATAACATCTGAAGGTAACTTTCCAGCGCATTCACATTTTAGTGCATTGGAAAATACTAATCCTATGGGGACTCTATCCTCTTTACAACACTCTATGAATGTTCACTATAATAATGCTAAGCAGATTCCAACTGACCCCAATTCTTCTATCAACCCATCTATGAAGTTCAGCTCATTTCCTCCTCCTCACGGGAAAGGTTATGGAGCTGAAAGAAATCCATTTCATCCTAAAGTGCAGCCAGATATTTTTCCTAACCCAATGCCTAATCTTCGTCCACCTATTACAAGTAGTTTATCTATGGAGAACCTTCCCGTATCAAGGACAGCCACCTCTTTTGACTCGGGGACTATACAACAAAGTCATAATGTACAAGGTGGATGTTATGTTTCAAATCAAATGCATCAAAAAATTTCTCCAGAACAGACACCTACTAATCCAGGAAATTTAAATCTAAACACCTCTGCTCAGGTGCATCCAATAGGAAGATGGCTGCTACCTCCAGAGCATAACGATACTGGGGCTCAAATAAGGATTATTTTGCAGGCCATAGAGACATTGAAACAGAATATGATGGTACCTTCAATAGGTAATATTGAAGATTGCATAAAATATCAAGAGATGCATATTTCTAATTTTGACATCCATGAGTTATTGGGGAAGGCTGTTGAGCAAAAGGAAATTGTAATAATGAGGGCTGGCGGAGCATCCCCGTTATATCTTCCACGTGCAACTAGTCTTTGGAAATGTGTGGATCCTTGTAATATGCATGATAACTATCCCAAGGAAGCCTGGGAGGAGTTTCATAAATATCTTTCAAGTTTTGAAGGACGTGACACAATAATGAAATCAGAGAGGCGGTATCATGCAGCTTTAATGTTGAAGTCATGTTGTTTGAAAAATCTTAAAATCGGAGAAATTATACATATGCTGCAGCTGGCAATCGATAAGAGACGGTGGCTATCCCATCATCAGTCAGGGTGGCAGCCCTTATCTATTACAACTTACAGTAGACCCCTGTGA___CAGATTTGGGACTTCAAGTGTGAATCCTGGGAGTCATTTTACATTGCAGGCATACATAGCAAATACAGAAGTATATTTTCTACATTTACATATAATATATGTAGATACACTACATATATGTAGAATGTTCAATATCTATGCAGAATGCTTGGATTATTTTTCTGATAGGCCCAAGCTGAGGAGTTTAGTTATAAGTTGGTATGTAGTATTGGCAAATTCATTCTGCTCCCAGAAGCACAGTATGCGGGACTCTGGCTGGTATACATCAGGGTGATCAAGGTTAGGCCATACTTTTGCTTATTTTAATCCAGAGCCTAAATCATGGCCTTGGTTAGTTTAACATAACTTGTCTACATTTCTTGCAATGTAATCGTTCATTTTATAGCTTGTAGTTCCTTCAAACATATCAACAAATAGAGTGCAGTTAGACAAAATGCCTCGTCTTCAATAGTATTTGGGAATGGTGTACGACTTAACCAGAGTTCTAAGGTATTGCTTGAGATTTCTGTGAATATGACTATTGGTGTCATCTATCTGGCTTTTGCCGACTGTCTGGGAATATCTGGGATCTGCAACATTATAACAGTGAAAATAAAATCCTGCACTGATCTTCTAGATGCAGAACGTGTGGACAACGGGATGTATAAAGATGCTGCCACTATGAAGAAGCTGGCTATCATCTAAGAAGTGGATTATCATGCAGTGTACAATGCTTGGTTGTGGATGCCAGGTAGAATTCCAGGAGGCTGAAGTAGAGGAATTCATTCAGCTCCTGCAATGAAGCATTATCATTGTTGCTCCCATTATTTGCCTTTCAGTGGTTTGCTGGAAGACAGATGCGATATTGTTTGATTCAATCAATGTATGGGTGTGTTAAGGAAAAACTAGTTAAAACTGTTCTGTTCCAGTCTTGACATCAGCTGGATATGGTCTTTATATATTAGTGCTGTGGTCATTTCATTGCAAAATGATGGTAACTGGTTGCATGATCATCACAGTTTAGTAGTAGTATTGTAATTTAGCTTGTGTTGATGAAGCTTCAATACCAGAAATTACTATCTTTCAGTTTGCCAGTGAGAATATATAACTGGCTTATATCAGTTTTGTATTGTATCTGCCATTAGCAGGGGCTCATGTGAATCTCGGAGGGACTGCTTACCAAAGTCTCCTGGTGATAAACTTATCATACTTTTATGCTGAGTTGTTTCTTTAATTAAGTTGTAGCTTGAACCTGTTGAATTTTAAACGCTATACAATGGCACCTTACA

Fln Alignment:

sp_v1.1_unigene590___QAHSGNSNHF-PGMKFPVITSEGNFPAHSHFSALENTNPMGTLSSLQHSMNVHYNNAKQIPTDPNSS-INPSMKFSSFPPPHGKGYGAERNPFHPKVQPDIFPNPMPNLRPPITSSLSMENLPVSRTATSFDSGTIQQS-------------------HNVQGGCYVSNQ---MHQKISPEQXXXXXXXXXXXXSA--QVHPIGR-WLLP--PEHND-TGAQIRIILQAIETLKQNMMVPSIGNIEDCIKYQEMHISNFDIHELLGKAVEQKEIVIMRAGGASPLYLPRATSLWKCVDPCNMH-DNYPKEAWEEFHKYLSSFEGRDTIMKSERRYHAALMLKSCCLKNLKIGEIIHMLQLAIDKRRWLSHHQSGWQPLSIT
B9RFQ6_____________QEDQPNSNSYQPGPYVPKVTVSGPSPNFNPGS------PNFTWSDVTNVRDNHQSHFTQ-PLRPNASAMQPDFAAGNMYPPNFQ--------IHAPLMPPR-PNGTTFTSEPPTNVPDIGNLHISGYPTSFHNPPNAQRRNGEQKHDAKRKAPKSVNLNNSQNGYTTQNNPSGYHETVNNRYPGGSEYPPSSSSATATEVAPVNVIWGMPGCPKPSEYVQGLIGVILLALNTLKSEKIMPTEANIADCIRYGDPKHRNTDIKKALESAIEQ-QMVMKQNLGAVQLYVGKNEKLWRCVNPIGGSLKEYPKATWDEIQKFLASSAGRSAIMSSQCRYEAATIIKSMCLKELALGNILQILNMVIALKKWIIHHQSGWQPLTIT

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
1224	66		33		0.997452
1227	66		33		0.997452
1229		66	33		0.997452
1232		33		66	0.997452
1234	33			33	0.997753
1235	66			33	0.997452
1238		33	66		0.997452
1241			66	33	0.997452
1244		33	66		0.997452
1245		66		33	0.997452
1247	33	66			0.997452
1334	75		25		0.996473
1335		75	25		0.996473
1401		25		75	0.996473
1416		75		25	0.996473
1434			50	50	1.0
1543	90		10		0.90298
1721			75	25	0.996473
1759	66		33		0.997452
1778		25		75	0.996473
1780	75			25	0.996473
1785		25		75	0.996473
1791	75		25		0.996473
1792	75	25			0.996473
1794	75		25		0.996473
1796		25	75		0.996473
1801		25		75	0.996473
1802	25			75	0.996473
1921		12		87	0.992554
1924	87		12		0.992554
1926	87		12		0.992554
1928	87	12			0.992554
1929		12	87		0.992554
1930	87			12	0.992554
1936		87		12	0.992554
2053		87	12		0.992554
2057	87	12			0.992554
2058	87			12	0.992554
2061	87	12			0.992554
2062	87			12	0.992554
2067		12		87	0.992554
2424	27	72			1.0
2445		12		87	0.992554
2491		20		80	0.995493
2523			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain