SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene588

Length: 2030 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene588
TTTCAAGAAGCTTTCTTTCGAAATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAGTCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTT

Ace file of the UniGene sp_v1.1_unigene588

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI0_PINTA	-	-	94%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	protein	-	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AUI0

Fln msg:

Fln protein: MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC*

Protein Length: 559

Fln nts: TTTCAAGAAGCTTTCTTTCGAA_-_ATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAG___TCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTT

Fln Alignment:

sp_v1.1_unigene588___MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC
Q9AUI0_____________MVISKYAAAMSCLLIAVVALNVEAETRHYKFDIKFKNVTRLCHTEPIVTANGKFPGPTIHAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPPKG-PYPFPKPHKEVILILGEWWNSDTETVINQAMNSGLAPNSSDSHTINGKAGPLFYCPTKDTFALSVEPDKTYLLRIIKA-LNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVSAPGQTTNALLHTDKKAGRYFMAARVFMDAPIAVDNKTATAILQYTGSSNSLNPVMPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNACPTCINGARPAASVNNISFTMPTIALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNLQSSNGTRLSRIPFNSTVQLVLQDTSALTVENHPVHLHGFNFFIVGRGFGNYNPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGPEQSILPPGKDLPQC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
485	25		75		0.996473
668		83		16	0.994512
1100	10		90		0.90298
1160		27	72		1.0
1287		87		12	0.992554
1292	87		12		0.992554
1293	87			12	0.992554
1295	87			12	0.992554
1297			12	87	0.992554
1298	87			12	0.992554
1522		87		12	0.992554
1543		87		12	0.992554
1649	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain