SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene587

Length: 1783 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene587

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SHQ3_RICCO	-	-	5.0e-33	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	kh domain-containing protein	-	-	3.58059e-37	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K Homology domain	IPR004087	-	3.58059e-37	66%
Blast2go	K Homology domain, type 1	IPR004088	-	3.58059e-37	66%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	3.58059e-37	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU29

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 450 - 289

Fln protein: MIIGKGGETIRNLQSRSGARIQLIPLHLPEGDMSTSRTVHVTGNKQQIEAAQEMINDVISENRSRSTPMMGGYNQQGYRPRAPALQWGPRGPLPTQYPGYGYQQQTPSPFAGPSQYQSQPYGNYPQQTQGGYASGWDQRPPAPGQAPGQAEEYGYYGQQGQTGTASTDGNYGYGQPQEGGYGQPGTYEQQGFSQQGYDQGYGDQNYGGQESSQQVGGQQGNPQQGYGQQIYANKPVYGPPGTTETGTVSQHPPATEAEGPPNSSLQGYPEQVYGGPGTFREGYGQQSPATPGYGQHVTQSGYGQPLPAQPSYGQQVPSQPGYLQQHASSQPGYKQLGLNHSGYGQASTEAGYGQQGSTHPGTVQKETSQSGYYEQEGLSQPGSVKQESSQVGYGQNVSSQPGYGQNLSSQPGYGQHESNQKTYEGSTQQGYGEHSYNDGYSYDQLPADG*

Protein Length: 451

Fln nts: CAAATCCAATTAAAGGTTCCAAATAACAAGGTGGGT_-_ATGATCATTGGCAAAGGAGGTGAGACTATCAGGAACCTACAAAGTAGGTCTGGAGCGCGGATTCAGTTAATACCATTGCACCTTCCTGAGGGAGATATGTCTACAAGTAGGACAGTGCATGTGACTGGCAATAAACAGCAAATAGAGGCAGCCCAGGAAATGATCAACGATGTGATAAGTGAGAACCGTTCTAGAAGTACACCTATGATGGGGGGTTACAATCAGCAAGGTTATCGCCCACGTGCACCTGCACTACAGTGGGGTCCTAGAGGGCCACTGCCAACGCAATATCCAGGTTATGGATACCAGCAACAGACACCTTCACCATTCGCAGGACCTTCCCAGTATCAATCTCAGCCATATGGTAATTATCCTCAACAGACTCAAGGTGGCTATGCTTCTGGATGGGATCAACGGCCTCCTGCACCTGGTCAAGCTCCGGGACAAGCTGAAGAATATGGTTACTATGGACAACAGGGTCAGACAGGGACAGCATCTACAGATGGGAATTATGGTTATGGGCAGCCACAAGAAGGAGGATATGGACAGCCAGGCACTTATGAGCAACAAGGTTTCTCTCAACAGGGCTACGATCAAGGATATGGAGATCAAAACTATGGAGGTCAAGAATCATCCCAGCAGGTTGGTGGACAGCAAGGGAACCCCCAACAAGGGTATGGGCAGCAAATCTATGCCAACAAACCTGTTTATGGACCACCGGGAACAACTGAAACAGGAACTGTGTCACAACATCCTCCTGCAACAGAAGCAGAGGGACCACCGAATTCTTCTCTGCAAGGATATCCAGAACAAGTATATGGGGGTCCAGGAACTTTTCGTGAAGGATATGGTCAACAGTCACCTGCTACTCCTGGTTATGGACAGCATGTAACTCAGTCTGGCTATGGTCAACCTTTACCAGCTCAGCCATCCTATGGACAACAAGTGCCCTCTCAACCTGGTTATCTGCAGCAGCATGCATCTTCTCAGCCAGGATATAAGCAGCTGGGTTTAAACCATTCAGGCTATGGACAGGCTTCAACAGAGGCAGGTTATGGGCAGCAGGGATCAACTCATCCTGGTACTGTGCAGAAAGAAACATCCCAATCGGGCTATTATGAGCAAGAGGGCTTATCTCAACCTGGCTCAGTAAAGCAAGAGTCTTCTCAAGTTGGCTATGGGCAAAATGTATCCTCCCAGCCTGGATATGGGCAAAATTTATCCTCCCAGCCTGGGTATGGGCAACACGAATCCAATCAGAAAACATACGAGGGATCTACACAACAAGGATACGGGGAACACTCCTACAACGATGGATATAGCTACGATCAGCTTCCTGCAGATGGTTAGCATAAAATTGTACGTGCATCCACCACACTATATCATGTGATGTCCCTGCAAATAGAGACAACATTTATGAGTAAAGTTTAAGTGGGCAGAGTATGGGGGTCTAGTTCTGGAAACCCTAAAGAAACATTTCAAGTTGAAATCTGTTATTGTCTATTGGATGATATGGTTGTTAGCTTGTACAGTAATGACTGGTAAAGGAGGGTTTCAAGCTCTAATAAGCTATTATTTATAGCTCACATTTCCTTTTAATTAATTAGATAGGTTATTTTATAGGCTGTGGCACAATGATATGGTAGGGCATTTTTAATTTTTTCTTGTACTTTATGAGCTCCTTAGCATTCTTTGGATCATTAACTTGATTAATTTTTTGTATCCTATTTCAGAGGTTCTGGTAAGT

Fln Alignment:

sp_v1.1_unigene587___TEAEGPPNSSLQGYPEQVYGGPGTFREGYGQQSPATPGYGQHVTQSGYGQPLPAQPSYGQQVPSQPG--YLQQHASSQPGYKQLGLNHSGYGQASTEAGYGQQGSTHPGTVQKETSQSGYYEQEGLS-QPGSVKQESSQVGYGQNVSS---QPGYGQN----LSSQPGYGQHESNQKTYEGSTQ------QGYGEHSYNDGY
A9NU29_____________SEASRAGSGSSAGYGE---AGSGYPRSGSGSGGEYYSGNGVVNDDSGYGGGSGDDSGYRQS----PGNAYATYPPGSNGGYGQGGKYGSGYSGRSEKSGAYGSGYSGGSYVSGSGNGKGYEAGHGKGYEAGNGKGYEAGSGYGSGYSGGSYEAGYGNDKGYEAGSGKGYEAGSGNGKSYEAGSGYGAGSGNGNGEYGANNGY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1234			27	72	1.0
1236		72		27	1.0
1237	27	72			1.0
1241	18	81			0.999994
1361			85	14	0.999981
1430		18		81	0.999994
1629	10			90	0.90298
1630	10			90	0.90298
1679	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain