SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene581

Length: 1488 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene581

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ERD1 protein, chloroplast precursor, putative; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin ClpA/B	IPR001270	-	85%
Blast2go	AAA+ ATPase domain	IPR003593	-	85%
Blast2go	ATPase, AAA-2	IPR013093	-	85%
Blast2go	Clp ATPase, C-terminal	IPR019489	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG2

Fln msg:

Fln protein: MWSGIPVEQLTADEQLKLIGLEKRLRTRVVGQDDAVSAIARAIRRARVGLKDPDRPIATMLFCGPTGVGKTELTKALAELYFGSEAAMIRLDMSEYMERHTVSKLIGSPPGYVGYGDGGTLTEAVRRKPFTIILLDEIEKAHPDIFNILLQVFEDGHLSDSQGRRVSFKNTLIIMTSNVGSTAIAKGGSNRIGFAFVEEEHEGRYSALKALVMEELNGYFRPELLNRIDDVVVFRSLEKSQVREIVDLMLTETRERLSTSRHGVGLEVSEAVLNLICEQGYDRSYGARPLKRALVRLVEDVISEAFLADNYQAGDTALVDLDASGHPFVTCHRKPNCYEHGICLSVAT*

Protein Length: 350

Fln nts: TTGTTGAGCCAGATGACATAGCAGCTATTGCATCC_-_ATGTGGTCAGGAATTCCTGTTGAACAGCTTACTGCAGATGAACAACTTAAGTTGATTGGTCTTGAGAAAAGGCTCCGAACTCGCGTTGTTGGTCAAGATGATGCTGTCAGTGCCATTGCTAGAGCAATAAGAAGAGCCCGTGTAGGCTTGAAGGATCCTGATCGACCCATTGCTACTATGCTTTTTTGTGGTCCAACTGGAGTTGGCAAGACAGAATTGACTAAGGCCTTGGCTGAATTATATTTTGGATCAGAAGCAGCCATGATCAGGCTGGACATGAGTGAATACATGGAACGACATACTGTGAGCAAATTGATTGGGTCACCACCTGGATATGTAGGATATGGTGATGGGGGCACCCTAACTGAGGCTGTAAGACGGAAACCATTTACAATAATATTGCTTGATGAAATTGAGAAAGCCCACCCTGATATTTTCAACATCCTACTCCAAGTGTTTGAGGATGGCCATCTCTCTGATTCCCAGGGTCGAAGAGTATCTTTTAAAAATACCCTCATTATTATGACATCCAATGTTGGATCCACAGCGATTGCAAAGGGTGGAAGTAATAGAATTGGATTTGCCTTTGTAGAAGAGGAGCATGAAGGAAGATATTCAGCCTTAAAAGCATTAGTCATGGAGGAATTGAATGGCTATTTTCGGCCAGAATTACTAAATAGGATTGATGATGTAGTTGTTTTCCGTTCATTAGAAAAGTCCCAGGTACGTGAGATAGTTGATTTGATGTTAACCGAGACTAGAGAACGACTTTCTACTTCTAGACATGGAGTTGGTTTAGAAGTGTCAGAGGCTGTGCTGAACCTCATATGTGAACAAGGTTATGATCGCAGTTATGGTGCAAGGCCTCTAAAGAGAGCACTTGTGCGTTTGGTCGAGGATGTCATAAGTGAAGCATTTCTAGCAGATAACTATCAGGCAGGTGACACTGCTCTTGTTGATCTGGATGCTTCTGGACATCCTTTTGTCACGTGTCATCGGAAACCAAACTGCTATGAGCATGGAATTTGCTTATCCGTCGCAACATGA___GCTTGAATCAGTATGCTTCGCAAAAGTAGCTATTCCCATCAATATTTTTTAGCCGTTATATGTGCATTTCATTCGTCAGAGCCTGTAAAGCTAATTATTCTTACCATTTAATGCTAGCAATTGTACATTTATGTATATATACACATATATATTGTAGAGAGATCTTTCTTGTCTGATTGTTGTTAGACATTATAGTTGAAGGTTCATAATGGTCCAAATTGGGTAAGTATTTATTGGATCACTGATACTGTATCCAAGTTATGTTAAAGCCTGTTTGAGCAATGTGCAAGTGTTGTAAATGGGCTGCTCCCAATAATTTCATCGAGGAGATTTAACTCGTGTTTTTAATTTTGAGCTAATTCTTGAGTCTTACCATTTAATGCATCCTTTGAAGGACCCAATTAAT

Fln Alignment:

sp_v1.1_unigene581___LEKRLRTRVVGQDDAVSXXXXXXXXXXVGLKDPDRPIATMLFCGPTGVGKTELTKALAELYFGSEAAMIRLDMSEYMERHTVSKLIGSPPGYVGYGDGGTLTEAVRRKPFTIILLDEIEKAHPDIFNILLQVFEDGHLSDSQGRRVSFKNTLIIMTSNVGSTAIAKGGSNRIGFAFVEEEHEGRYSALKALVMEELNGYFRPELLNRIDDVVVFRSLEKSQVREIVDLMLTETRERLSTSRHGVGLEVSEAVLNLICEQGYDRSYGARPLKRALVRLVEDVISEAFLADNYQAGDTALVDLDASGHPFV
D5AEG2_____________MEETLHQRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRG-IGFQLDYDEKDSSYTRIKSLVNEELKQYFRPEFLNRLDEMIVFRQLTKTEVKEIADIMLREVFERLKTKE--IGLQVTERFTDRVVDEGYSPSYGARPLRRAIMRLLEDSLAEKMLAGEIKEGDSAIVDVDGEGNVIV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
245	50		50		1.0
247		50		50	1.0
249			50	50	1.0
559	20			80	0.995493
708		75		25	0.996473
1440		25		75	0.996473
1443	33			66	0.997452
1444	33			66	0.997452
1445	33	66			0.997452
1446	33			66	0.997452
1447	33			66	0.997452
1448	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain