SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene553

Length: 1480 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene553

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 5 n=1 Tax=Vitis vinifera RepID=PER5_VITVI	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	peroxidase 1	-	-	67%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	67%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	67%
Blast2go	Haem peroxidase	IPR010255	-	67%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	67%
Blast2go	Peroxidase, active site	IPR019794	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg:

Fln protein: MAEALFRKAALFTVVFCAFARAAVSDNLAVGYYKHICPAAEPIVFAVVSSAFHSSPEIAAKLIRLHFHDCFVRGCDGSVLIDSIAGQFVAEKDSPANNPSLGGFDVIDNAKSLLEKICPKKVSCADIVAFAARDSALLASPIGYPLWWDVPAGRKDGNISLASNIPGNLPPPTLNVTQLTQIFATKGLSQDEMVTLSGAHTIGVSHCTSFVSRLYNFNGTNATDPSLDPLYAQILKQRCPQGSPSNANTTVVMDPQTPFILDNLYYNDVIANRGLFTSDATLLTNPNTKSSVFGNSGSYNLVAWQKKFAAAMIKMGEISVLTGSQGGVHANCRVANS*

Protein Length: 339

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTTTTCAGTAACGAACTTGACTCCTGTTATCTCCCATCTCAGGATTTCAGTTACTATCTCAGGGAAGGATCAACTCCCTGGTGTCATCTAAGTGTTTAGGGAGGTAAA_-_ATGGCGGAGGCTCTTTTCCGTAAGGCTGCCCTATTTACCGTAGTATTCTGTGCCTTTGCTAGGGCTGCAGTAAGCGACAACCTTGCAGTGGGCTATTACAAACATATTTGTCCAGCGGCGGAACCCATTGTGTTTGCGGTGGTTAGCAGCGCATTCCATAGCTCTCCTGAAATAGCCGCTAAGCTTATACGTTTGCATTTCCACGATTGTTTTGTCAGGGGATGCGATGGTTCCGTTCTCATCGACTCCATAGCCGGCCAGTTCGTAGCCGAGAAAGACTCTCCGGCTAACAATCCGAGTCTCGGAGGATTCGACGTGATTGACAACGCCAAATCACTATTAGAGAAGATCTGCCCAAAGAAGGTCTCCTGTGCAGACATTGTCGCATTTGCGGCTAGAGACAGTGCATTGCTGGCATCGCCCATTGGATATCCCCTCTGGTGGGATGTTCCGGCTGGAAGGAAGGATGGAAATATTTCACTAGCTTCCAATATTCCGGGAAATCTGCCTCCACCTACCCTTAACGTAACCCAGCTAACTCAGATATTTGCAACCAAAGGTCTATCCCAAGACGAGATGGTTACATTGTCAGGAGCACACACAATTGGTGTCTCTCACTGTACTTCATTCGTCAGCAGGCTCTACAATTTCAACGGCACGAATGCCACAGACCCGTCCCTTGACCCGTTGTATGCTCAGATACTGAAGCAAAGGTGTCCCCAAGGTAGCCCAAGCAACGCCAACACGACCGTGGTCATGGATCCTCAAACGCCATTCATCCTAGACAACTTGTATTACAACGACGTTATAGCTAACCGTGGTCTGTTTACATCCGATGCAACTCTGCTTACAAATCCAAACACCAAATCCAGCGTCTTTGGAAACTCGGGCTCTTATAACCTGGTAGCGTGGCAGAAAAAGTTTGCTGCTGCAATGATAAAAATGGGAGAAATTAGCGTATTGACTGGTAGCCAGGGAGGAGTCCACGCCAACTGTAGAGTTGCCAACAGTTAA___TCAGATTGGAAATTTCAATTTCGTTTGCTTGAATTTTGGAATATTATTTCAATTCGAAATGCGCTTGTGCTTCTCTACAAATAAATTATATGTACTTCCTTCTCTCACCGCGTGTATGAACTGCCATGTTCTTCCAATAAAATAATAAATTATCGGAAGTATTCTTCTATAGATTTTGGCTTACGAAACGAAGTGGCAACTTGAATTCCTGTAGTTTTGCATATCATATTCATTTACTTCAAACCACAGTTGGAGCTCCGTCCTATGTTATAAAGTTAACAGAAATGTATTGGTGAGATATAAAGAGAATTTTGCAAGAATTACAAGAAAT

Fln Alignment:

sp_v1.1_unigene553___KMAEALFRKAALFTVVFCAFARAAVSDNLAVGYYKHICPAAEPIXXXXXXXXXXXXPEIAAKLIRLHFHDCFVRGCDGSVLIDSIAGQFVAEKDSPANNPSLGGFDVIDNAKSLLEKICPKKVSCADIVAFAARDSALLASPIGYPLWWDVPAGRKDGNISLASNIPGNLPPPTLNVTQLTQIFATKGLSQDEMVTLSGAHTIGVSHCTSFVSRLYNFNGTNATDPSLDPLYAQILKQRCPQGSPSNANTTVVMDPQTPFILDNLYYNDVIANRGLFTSDATLLTNPNTKSSVFGNSGSYNLVAWQKKFAAAMIKMGEISVLTGSQGGVHANCRVAN
A9P1P4_____________KMATILF-SAASFLIFACSLTDAA--GGLELNFYDKTCPGVSNVVEAVIAHYISKAPTLAAPLLRMHFHDCFVRGCDGSVLLNSTKSR-KAEKEA-APNLTLRGFQVIDAAKAAVEKVCPGVVSCADILALVARDAVHM---LGGP-FWNVPTGRRDGVVSIQNEAVAKLPPPNGTFSKLKSIFASNGLDVKDLVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKC---KPGDNKTIVEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQSYINKGLESSSFL-WD--FARSMEKMGRIGVLTGTAGQIRRHCAFTN

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
127	33		66		0.997452
150			20	80	0.995493
238		80		20	0.995493
386		37		62	1.0
393		87	12		0.992554
422		28		71	1.0
444	71		28		1.0
464		42		57	1.0
471	85		14		0.993533
514	83		16		0.994512
555			50	50	1.0
560		50		50	1.0
566	90			10	0.90298
570	22	77			0.999999
571		88		11	0.923564
574		44	11	44	1.0
588			87	12	0.992554
660		83		16	0.994512
684		14		85	0.993533
738	85			14	0.993533
771		85		14	0.993533
792		85	14		0.993533
800		85	14		0.993533
824		20		80	0.995493
903	75		25		0.996473
946	25		75		0.996473
958		75		25	0.996473
982		33	66		1.0
983		66	33		1.0
985			33	66	1.0
988	66	33			1.0
989	66			33	1.0
990	66			33	1.0
991			33	66	1.0
992		66	33		1.0
993	50	50			1.0
994	66			33	1.0
995	66		33		1.0
996	50		16	33	1.0
1000		66		33	1.0
1001	66	33			1.0
1002	83			16	0.994512
1005	33	66			1.0
1009		83		16	0.994512
1043		20	80		0.995493
1183	44			55	1.0
1224		88	11		0.923564
1249		71		28	1.0
1258	71		28		1.0
1279		28	71		1.0
1287	64		35		1.0
1319			33	66	1.0
1329	10		90		0.90298
1332			10	90	0.90298
1333	10			90	0.90298
1336		10	90		0.90298
1341		37	62		1.0
1357			37	62	1.0
1371		62	37		1.0
1387	80	20			0.995493
1396		80	20		0.995493
1421	66			33	0.997452
1423	66		33		0.997452
1425	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain