SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene545

Length: 2050 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene545
CGTCGTGACCTTGGCTGTCATGGGGATCCAACATTTTGCTTCTCCAATTCTATCCATTTCTCTGCAAACCTGCACGGTTTTGGGCAACCCATGACCTCCACGATGACAGCGACGGCCAATTTAGGCCTTCGGTCTCCGCCAACAATGGGCATCAGGGACCGGATATCATTTTATCCATCACTGGGCGCCTCGCCCACAAGACTCCGCCAGCGCTTCGCTGGAGTCCGCGCAGAAGCCCTCGACGCGACGGTGGCCGAAAGGAGCAGCGTGCCAACAAAAGGTAAGGATACCGATGACCCAGTTCACCAGTTCTTGAAAAGGGATTACAAGTATGGCTTTGTATCAGACATTGAATCCGAGTCTATTCCCAAAGGGCTTTCTGAGGAAACCGTTAGGTTAATTTCAGCTAAAAAGAAGGAACCTGAATGGCTTTTGCAATTCAGACTCAGTGCTTACAGACAGTGGTTAAAAATGGAAGAACCCAAGTGGTCTGATAACGTTTACTCACCCATCAATTTCCAGGACCTTTGCTATTATTCTGAACCTAAACAGAAAGAGCAGAAGAAGAGCCTGGATGAGGTGGACCCTGACCTGCTTGAGACTTTTCAGAAGCTGGGCATACCCCTGACTGAGCAGAAGAGATTGGCCAACGTTGCCGTAGATGCTGTTTTTGACAGTGTTTCCATTGCTACCACGCATAGGAAGACTCTACAGGCTGCTGGGGTTATCTTTTGTTCGATATCGGAGGCAGTTCGGGAGTATCCTGATCTGGTTAAGAAGTATCTTGGCAGGGTTGTGCCCCCTGCTGATAACTATTATGCTGCCTTGAATTCTGCTGTTTTTAGTGATGGCTCCTTCTGTTACATCCCCAAGGACACTGTGTCGCCCATGGACATATCCACTTATTTCCGGATCAACGCGATGGAGACCGGGCAGTTTGAGAGAACTCTTATTGTTGCAGATGAGAGGAGTTCTGTGAGGTATCTGGAGGGATGCACTGCGCCATCCTATGACACCAATCAGCTCCATGCCGCAGTCGTGGAGCTCTATTGCGCCGAGGGCGCAGAGATTAAGTATTCCACTGTACAGAATTGGTATGCCGGGGATGAGGAAGGCAGAGGTGGGATTTATAATTTTGTTACGAAAAGAGGTTTGTGCGATGGAGACAAATCAAGGATTTCGTGGACCCAAGTAGAGACTGGTTCAGCAATCACCTGGAAATACCCAAGCGTGGTTTTGAAAGGCGATGATACGATTGGAGAGTTCTATTCTGTTGCCTTGACAAATAACTATCAACAGGCAGATACAGGGACAAAGATGATCCATGTAGGGAAGAATTGCAGGAGTAGGATTGTTTCTAAAGGTATATCTGCAGGAAAGTCGAGGAACTGCTACAGAGGATTGGTGCAGGTGCAACCAAATGCTCATAATGCAAGGAATTTTTCACAGTGCGATTCGATGCTCATTGGTGACCAGGCAGCTGCAAATACTTATCCTTACATTCAGGTAAAGAACCCAACAGCCCGTGTTGAACATGAAGCAAGTACCTCAAAAATTGGGGAAGATCAGTTATTCTATTTCCAGCAGAGGGGGATTGATCCAGAGAAGGCAGTGGCGGCTATCATTAATGGCTTTTGTCGGGTTGTATTTAATGAGCTTCCACTAGAATTTGCTGCTGAAGTAAATCAATTGATGAGTTTGAAGCTTGAAGGCAGTGTTGGCTAGGTGTTGCAAGGTCTCGCTGTAACACTATCTATGTACATGATTCTAATGCCATGAGATGGTGTCTCAATAACACAACTGTTTAGTGTCAGGTGCTAGATGTAGATAGCTTCCTCGTGTCCTACAGGGAAATCATATCATTATATTTTCTATGAAATCTGGGAATGCCTTCAAAGTTTGTCCTAGGTAAGGAAATATGTATGTACTCTTGAATTTATCTCTGTTGTAATGAGATTAAGAATAAAGTTGTCATTGTAAAGAATTGGGATCTACCATGTAAGCTTTCTTTACTACACAAAATTCTTGATTTGTTAAATTCAATTAGTTA

Ace file of the UniGene sp_v1.1_unigene545

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RAW0_PHYPA	-	-	87%
FL-Next	sp=UPF0051 protein ABCI8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	at4g04770 t4b21_16	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	85%
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	85%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	85%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	mitochondrial respiratory chain	GO:0005746	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SUF system FeS cluster assembly, SufBD	IPR000825	-	0.0	85%
Blast2go	SUF system FeS cluster assembly, SufB	IPR010231	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZS97

Fln msg:

Fln protein: MTSTMTATANLGLRSPPTMGIRDRISFYPSLGASPTRLRQRFAGVRAEALDATVAERSSVPTKGKDTDDPVHQFLKRDYKYGFVSDIESESIPKGLSEETVRLISAKKKEPEWLLQFRLSAYRQWLKMEEPKWSDNVYSPINFQDLCYYSEPKQKEQKKSLDEVDPDLLETFQKLGIPLTEQKRLANVAVDAVFDSVSIATTHRKTLQAAGVIFCSISEAVREYPDLVKKYLGRVVPPADNYYAALNSAVFSDGSFCYIPKDTVSPMDISTYFRINAMETGQFERTLIVADERSSVRYLEGCTAPSYDTNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGLCDGDKSRISWTQVETGSAITWKYPSVVLKGDDTIGEFYSVALTNNYQQADTGTKMIHVGKNCRSRIVSKGISAGKSRNCYRGLVQVQPNAHNARNFSQCDSMLIGDQAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDPEKAVAAIINGFCRVVFNELPLEFAAEVNQLMSLKLEGSVG*

Protein Length: 546

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATCCAACATTTTGCTTCTCCAATTCTATCCATTTCTCTGCAAACCTGCACGGTTTTGGGCAACCC_-_ATGACCTCCACGATGACAGCGACGGCCAATTTAGGCCTTCGGTCTCCGCCAACAATGGGCATCAGGGACCGGATATCATTTTATCCATCACTGGGCGCCTCGCCCACAAGACTCCGCCAGCGCTTCGCTGGAGTCCGCGCAGAAGCCCTCGACGCGACGGTGGCCGAAAGGAGCAGCGTGCCAACAAAAGGTAAGGATACCGATGACCCAGTTCACCAGTTCTTGAAAAGGGATTACAAGTATGGCTTTGTATCAGACATTGAATCCGAGTCTATTCCCAAAGGGCTTTCTGAGGAAACCGTTAGGTTAATTTCAGCTAAAAAGAAGGAACCTGAATGGCTTTTGCAATTCAGACTCAGTGCTTACAGACAGTGGTTAAAAATGGAAGAACCCAAGTGGTCTGATAACGTTTACTCACCCATCAATTTCCAGGACCTTTGCTATTATTCTGAACCTAAACAGAAAGAGCAGAAGAAGAGCCTGGATGAGGTGGACCCTGACCTGCTTGAGACTTTTCAGAAGCTGGGCATACCCCTGACTGAGCAGAAGAGATTGGCCAACGTTGCCGTAGATGCTGTTTTTGACAGTGTTTCCATTGCTACCACGCATAGGAAGACTCTACAGGCTGCTGGGGTTATCTTTTGTTCGATATCGGAGGCAGTTCGGGAGTATCCTGATCTGGTTAAGAAGTATCTTGGCAGGGTTGTGCCCCCTGCTGATAACTATTATGCTGCCTTGAATTCTGCTGTTTTTAGTGATGGCTCCTTCTGTTACATCCCCAAGGACACTGTGTCGCCCATGGACATATCCACTTATTTCCGGATCAACGCGATGGAGACCGGGCAGTTTGAGAGAACTCTTATTGTTGCAGATGAGAGGAGTTCTGTGAGGTATCTGGAGGGATGCACTGCGCCATCCTATGACACCAATCAGCTCCATGCCGCAGTCGTGGAGCTCTATTGCGCCGAGGGCGCAGAGATTAAGTATTCCACTGTACAGAATTGGTATGCCGGGGATGAGGAAGGCAGAGGTGGGATTTATAATTTTGTTACGAAAAGAGGTTTGTGCGATGGAGACAAATCAAGGATTTCGTGGACCCAAGTAGAGACTGGTTCAGCAATCACCTGGAAATACCCAAGCGTGGTTTTGAAAGGCGATGATACGATTGGAGAGTTCTATTCTGTTGCCTTGACAAATAACTATCAACAGGCAGATACAGGGACAAAGATGATCCATGTAGGGAAGAATTGCAGGAGTAGGATTGTTTCTAAAGGTATATCTGCAGGAAAGTCGAGGAACTGCTACAGAGGATTGGTGCAGGTGCAACCAAATGCTCATAATGCAAGGAATTTTTCACAGTGCGATTCGATGCTCATTGGTGACCAGGCAGCTGCAAATACTTATCCTTACATTCAGGTAAAGAACCCAACAGCCCGTGTTGAACATGAAGCAAGTACCTCAAAAATTGGGGAAGATCAGTTATTCTATTTCCAGCAGAGGGGGATTGATCCAGAGAAGGCAGTGGCGGCTATCATTAATGGCTTTTGTCGGGTTGTATTTAATGAGCTTCCACTAGAATTTGCTGCTGAAGTAAATCAATTGATGAGTTTGAAGCTTGAAGGCAGTGTTGGCTAG___GTGTTGCAAGGTCTCGCTGTAACACTATCTATGTACATGATTCTAATGCCATGAGATGGTGTCTCAATAACACAACTGTTTAGTGTCAGGTGCTAGATGTAGATAGCTTCCTCGTGTCCTACAGGGAAATCATATCATTATATTTTCTATGAAATCTGGGAATGCCTTCAAAGTTTGTCCTAGGTAAGGAAATATGTATGTACTCTTGAATTTATCTCTGTTGTAATGAGATTAAGAATAAAGTTGTCATTGTAAAGAATTGGGATCTACCATGTAAGCTTTCTTTACTACACAAAATTCTTGATTTGTTAAATTCAATTAGTTA

Fln Alignment:

sp_v1.1_unigene545___DRISFYPSLGASPTR-LRQRFAGVRAEALDATVAERSSVPTKGKDTDDPVHQFLKR---DYKYGFVSDIESESIPKGLSEETVRLISAKKKEPEWLLQFRLSAYRQWLKMEEPKWSDNVYSPINFQDLCYYSEPKQKEQKKSLDEVDPDLLETFQKLGIPLTEQKRLANVAVDAVFDSVSIATTHRKTLQAAGVIFCSISEAVREYPDLVKKYLGRVVPPADNYYAALNSAVFSDGSFCYIPKDTVSPMDISTYFRINAMETGQFERTLIVADERSSVRYLEGCTAPSYDTNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGLCDGDKSRISWTQVETGSAITWKYPSVVLKGDDTIGEFYSVALTNNYQQADTGTKMIHVGKNCRSRIVSKGISAGKSRNCYRGLVQVQPNAHNARNFSQCDSMLIGDQAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDPEKAVAAIINGFCRVVFNELPLEFAAEVNQLMSLKLEGSVG
Q9ZS97_____________ESLKFPSPKSLNPTRPIFKLRADVGIDSRPIGASESSSSGTSTVSSTDKLQQYFQNLDYDKKYGFVEDIDSFTIPKGLSEETIRLISKLKEEPDWMLEFRFKAYAKFLKLEEPKWSDNRYPSINFQDMCYYSAPKKKPTLNSLDEVDPQLLEYFDKLGVPLTEQKRLANVAVDAVIDSVSIATTHRKTLEKSGVIFCSISEAIREYPDLIKKYLGRVVPSDDNYYAALNSAVFSDGSFCYIPKNTRCPMPISTYFRINAMETGQFERTLIVAEEGSFVEYLEGCTAPSYDTNQLHAAVVELYCGKGAEIKYSTVQNWYAGDEQGKGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAEGAKNTSTCDSMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGFCRDVFNKLPDEFGAEVNQLMSIKLEGSVG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
694		66		33	0.997452
821			60	40	1.0
987		16		83	0.999991
1083		81		18	0.999994
1254		90		10	0.90298
1257			10	90	0.90298
1258			10	90	0.90298
1457			10	90	0.90298
1570		13	86		0.999973
1572		13		86	0.999973
1776		82		17	1.0
1785		50	50		1.0
1790	20		20	60	0.99255
1979		22		77	0.999999
1983		16	83		0.994512
1986		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain