SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene541

Length: 1512 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycolate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RWT6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	76%
Blast2go	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	76%
Blast2go	HAD-like domain	IPR023214	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP4

Fln msg: Separated hits, possible frame ERROR between 442 and 642, your sequence is longer than subject: 232 - 152

Fln protein: MLIVRSFMCRPAMATGFNAPSASVRMSTSSVGRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADVKSGNTSGIDILHQIEQWSPDRQQKAYATITDFERQAHERLQIMPGALELCEFLDSRQIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVVARVLVQLHVCLMNLASTTVLIQISTHNQISR*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGAAAACAACCAAAAGAAATGTTGAA_-_ATGTTGATTGTGAGAAGCTTTATGTGCAGGCCGGCCATGGCGACAGGATTCAATGCTCCCTCTGCAAGTGTTCGGATGAGTACTTCTTCCGTTGGCAGGGTCAAGCCAAAATTGAGGGGAGTGGTGTTCGACATGGATGGGACCCTGACCGTCCCAGTTATAGACTTTGCTCTCATGAAGCGCATGGTTCTGGGAGACGATCATGCCGACGTTAAGTCTGGAAATACTTCAGGCATCGACATACTTCACCAGATTGAGCAATGGAGCCCTGATAGACAGCAGAAGGCCTATGCCACTATCACTGATTTCGAACGCCAGGCCCATGAGCGACTCCAGATAATGCCGGGAGCATTGGAACTTTGCGAGTTTCTTGATTCAAGACAAATAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGGTTGTGGCAAGAGTGCTGGTGCAATTACATGTTTGCTTGATGAATCTGGCAAGTACAACAGTACTGATACAAATCTCAACCCACAACCAGATTTCAAGGTGA___ACTCATTATTCGAGCTTTCTAAATTATTGGACACGGAAGTTGAATTGACGCCTTAACGGTTGGGATTTTAAGGTTTGAGATTTTCTTATTTCCTCTCTAAGAGTGTAATTTTTTATCAAAGTATGATATCAAAATTAATACTTTGCATTCATCTTGAAACTTTAAATCATGTTTGAAATTAACTTCCAATAGCTGGAAAGTAGGAAATGCAGGACAGTCTATGGAAAGCAACATTCTAGTTGCAAGTGAGGATAAATATCGGTCAAATATGATATATCACCTCACGTTAGGCATACAGGCTGATTTTGTTTTATGCTTTTGGGAGAAATTGCTGTTGAAAAGTATGTGGAGCAATTAATTTCAGTTCAGCAGTCTATGATAGTATATAATAGTCCAACTCGAATGAATTTGAAGGATGGGATCATTGGGAACATCAAATGTGAGTCCAAAGTCACGTCTACTTTATCTAAGTTTGCAGTTGCTTTATTCATATAAGGACTTTTCATCAGTTTATTGCCTTTTCTCTCAGCATCACTTTCTACTCTTTGATTTCATTATATGATACGTTAATATGCTACAAAAATGTTGAGAAAATTCCTTACTGGATTAATGGAAGATACTTTTTACCAGAGACTAATGCACCTTTGAACTAGCTAAATTCTGTTATGTAGCTGGAAGTGTCAACTATCAAATCACATTTTAAGAGGAAAAGTGATGAAGTTCATTATTAGCAATCAATACAGCTAAATTCAATCCTCTTTATTTG

Fln Alignment:

sp_v1.1_unigene541___MATGFNAPSASVRMSTSSVGRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADVKSGNTSGIDILHQIEQWSPDRQQKAYATITDFERQAHERLQIMPGALELCEFLDSRQIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVVARVLVQLHVCLMNLASTTVLIQISTHNQISR
A9NNP4_____________MATGFNSPSASVRISTSSDVRVKPKLRGVVFDMDGTLTVPVIDFALMKRMVLGDDHADIKSGNTSRIDILHQIEQWSPDRQQKAYTIITDFERQAHERLQIMPGALELCEFLDSRQIRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLVASVRVPLHAYLMNLASTTVLIHISTHNQISR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
49			12	87	0.992554
87		90		10	0.90298
401			90	10	0.90298
403	90			10	0.90298
404			10	90	0.90298
408	90			10	0.90298
416			90	10	0.90298
417	90	10			0.90298
481		12		87	0.992554
627	12		87		0.992554
631		87	12		0.992554
632	87		12		0.992554
670			11	88	0.923564
906		83		16	0.999991
1124	16		83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain