SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene540

Length: 2754 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene540
GTAGAAACAGGTGGGACTGTAATCTGGTTTATCTGCAGATGACATGGAATTAATTAGGATGCCAGTGTAATGAGGTGATTAAATAGAATGTTATAGTCTGCGTCGTGACCTTGGCTGTCACTCGAAGGGCGGAAAGGCCGTTGCAAAATAAGTCCCAATGGGAGAATCTGCATAATCGAAACTTCCCTGTACTATTCACAAAAGGACCTTGATCTGCGATATCAAACTCAAAATTCATACGGACCTGAAGAAGCTGTTGACGAGTGACCCTACAACAGTGATGATATTGTCCTCCTGCATAGTGCTTTAAAGATACCATTTTAAACAGAAACAACTGTCCAGCAGCACTTCAAATGAAATGGAGACTAGCAGGGCTGAAGGTTCAGATCCCGCTCCAATAGACACAACTTCTATATTGCCTCCTTCTAATCCTCAGTCACCTAATGATCATTCCACATCAAGATTTTCACCATCTGGTTTTTCAACATGGGCAAAAAGCTTCAAATTTTCACAACCCTCAGCTCCGGAGATTGCACAGCCTGTGGATGGTAAGAAATCTCCATTTGGTCGCTTAGCCAGTGGATTAGGTATACGATCATCTTCTAAGATTCCAGTTGTTGACGATCCTACGGAAGATTCAACACAAGTTGCAGTCACGCAGGAAGGTGCACTTGGGACCATCACAAAAGGATTCTTGGACACATCAAAAAATGCAATGAGGGCTGTTCAAATCAAAGCTCGGCACATTGTGTCACAGAACAAAAGGAGATATCAGGAAGGTGGTTTTGATTTGGATATGACATATATTACTGAAAACATAATTGCTATGGGTTTTCCTGCTGGCGACATCAGTTCTGGTATTTTTGGATATGTGGAGGGGTTTTATCGGAATCATATGGAAGAGGTTATGAAGTTTTTTGAAAGTCATCACAAGGGAAAATACAAAGTGTACAACCTTTGCTCTGAAAGATTATACGATGCTTCACTGTTTGAAGGGAAGGTTGCTTGCTTCCCCTTTGATGACCATAATTGCCCTCCAATTCAACTCATAGTATCATTTTGTCAAAGTGCTTACTCATGGCTGAAGGAAGATATTGAGAATGTAGTAGTTGTTCATTGTAAAGCTGGCATGGCTAGAACAGGGCTCATGATATCGAGTCTTCTTCTTTACCTCAAGTTCTACCCCACTGCTGAAGAATCCATTGCTTATTACAACCAGAAACGGTGTATAGATGGCAAGGGTCTTGTTCTTCCAAGCCAAATTCGCTATGTAAAATATTTTGAACGAGTGCTCACATATTTCAATGGTGAAGTTCAACCTGGTAGGAGATGTATACTTCGGGGATTCCGTCTTCATAAATGCCCTTACTGGGTTCGACCATCTATTACAGTATCTGATCATAATGGAGTTCTCTTTTCAACAAAGAAGCATCCAAGGACAAAGGATATGATGCCAGATGATTTTTGGTTTAGTGCACCAAGGAAAGGAATCATGGTATTTGCTTTGCCAGGAGAAAGGGGTCTTACAGAGTTAAGCGGTGACTTCAAAGTTCACTTTCATGATCGTCATGGTGATTTTTACTGTTGGTTAAACACAACAATGATGGAGAACAGGCAAATTCTAAACACCGCTGATCTTGATGGTTTTGACAAGAGGAAACTGCCATGTCCAGGGTTTCAGGTTGAGGTTGTGGTGATGGATTATGATGCTCCAGTACCTTCCAAATCTAGAGGTGGCACAGTTACTGGAATGATCAGTCCAAGTGTGCTAGAAGGAAGACCAACTCAGACTAGTGACAGCAATGAACCTATACCATCAATGGAAGGCAATGAAGGCCAAGAAAAAGATGACATATTTTCAGACAGTGAAACTGAAGAAAATGGATTTTCAAAGATGAGACGGGAAAACGTCCCTCATACAGAAGAATCTGGTGCTGTATCTAGTGATTCCACTGAAAGATCTAAAGAACCAGTAGTGGAAAAGAGCAATTTGGTAAATATTACGCATGGCATTGAATCATCCTGTCAAGTATCTTCGAAAAATGAACCAAGTCCAGATGAAACCAATGCAAGTAAAGAACATATTCCGAATCAGAAAGATACTCAAGGTGATTCTAAAAGTGGCAAAAATCAGGGTGATGGCTCTAGCAGTTTAGAGACATCCTATATGCAGGAGGCTGGGAAGTCAGACACAGTTATAGCCAGTGATTTTAAGGCTATTGCTGCAGATGCATCGGTTTTCACATTTGGTGATGAAGAAGACTATGAAAGTGATTAATTGGTAAAAAATATATCACAGAAAATTCTGATGAAATAATTGATTGGTTCTGACAAATAAGGCTTGGTTTCAAAAACTTTGCAATGCAAGCAAATTATGACTTGCAGTTTCTTCAATTAGTTTATGTAAAGTACTGTATCTTCTAGGAAGACAGATTTTTTTCTCGTCCCACAAAGCCTGGAATTCTTGATTGTAGCATATGATTGGCTTGTTTTGTTATGAAAGCATTGTGCGTTCTGCTGTATCTATTCTATAGGAAGGCATGCCTATAACTTGTACTCAGTTTTAATATGGTGTTTAACACTTTGTTAGGCATGCTATCATTAGAAGAGGCCTTTGGTTAGATTCTCATTCATATTATTGTTTTGTGGGGTAGGTTATACCAAGTATATCTTTTGGATGCGCTCTTTTAGATAATGTAAATTATTTTAATCCATTATCTGCTTGAAGAAGAGGATTATTAGAAGTTCATGATT

Ace file of the UniGene sp_v1.1_unigene540 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoprotein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RYC0_RICCO	-	-	61%
FL-Next	tr=Phosphoprotein phosphatase, putative; Ricinus communis (Castor bean).	-	-	61%
Blast2go	tyrosine phosphatase	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphatase tensin type	IPR014019	-	71%
Blast2go	Tensin phosphatase, C2 domain	IPR014020	-	71%
Blast2go	Protein-tyrosine phosphatase, active site	IPR016130	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RYC0

Fln msg:

Fln protein: METSRAEGSDPAPIDTTSILPPSNPQSPNDHSTSRFSPSGFSTWAKSFKFSQPSAPEIAQPVDGKKSPFGRLASGLGIRSSSKIPVVDDPTEDSTQVAVTQEGALGTITKGFLDTSKNAMRAVQIKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDISSGIFGYVEGFYRNHMEEVMKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIVSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFYPTAEESIAYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEVQPGRRCILRGFRLHKCPYWVRPSITVSDHNGVLFSTKKHPRTKDMMPDDFWFSAPRKGIMVFALPGERGLTELSGDFKVHFHDRHGDFYCWLNTTMMENRQILNTADLDGFDKRKLPCPGFQVEVVVMDYDAPVPSKSRGGTVTGMISPSVLEGRPTQTSDSNEPIPSMEGNEGQEKDDIFSDSETEENGFSKMRRENVPHTEESGAVSSDSTERSKEPVVEKSNLVNITHGIESSCQVSSKNEPSPDETNASKEHIPNQKDTQGDSKSGKNQGDGSSSLETSYMQEAGKSDTVIASDFKAIAADASVFTFGDEEDYESD*

Protein Length: 641

Fln nts: GTAGAAACAGGTGGGACTGTAATCTGGTTTATCTGCAGATGACATGGAATTAATTAGGATGCCAGTGTAATGAGGTGATTAAATAGAATGTTATAGTCTGCGTCGTGACCTTGGCTGTCACTCGAAGGGCGGAAAGGCCGTTGCAAAATAAGTCCCAATGGGAGAATCTGCATAATCGAAACTTCCCTGTACTATTCACAAAAGGACCTTGATCTGCGATATCAAACTCAAAATTCATACGGACCTGAAGAAGCTGTTGACGAGTGACCCTACAACAGTGATGATATTGTCCTCCTGCATAGTGCTTTAAAGATACCATTTTAAACAGAAACAACTGTCCAGCAGCACTTCAAATGAA_-_ATGGAGACTAGCAGGGCTGAAGGTTCAGATCCCGCTCCAATAGACACAACTTCTATATTGCCTCCTTCTAATCCTCAGTCACCTAATGATCATTCCACATCAAGATTTTCACCATCTGGTTTTTCAACATGGGCAAAAAGCTTCAAATTTTCACAACCCTCAGCTCCGGAGATTGCACAGCCTGTGGATGGTAAGAAATCTCCATTTGGTCGCTTAGCCAGTGGATTAGGTATACGATCATCTTCTAAGATTCCAGTTGTTGACGATCCTACGGAAGATTCAACACAAGTTGCAGTCACGCAGGAAGGTGCACTTGGGACCATCACAAAAGGATTCTTGGACACATCAAAAAATGCAATGAGGGCTGTTCAAATCAAAGCTCGGCACATTGTGTCACAGAACAAAAGGAGATATCAGGAAGGTGGTTTTGATTTGGATATGACATATATTACTGAAAACATAATTGCTATGGGTTTTCCTGCTGGCGACATCAGTTCTGGTATTTTTGGATATGTGGAGGGGTTTTATCGGAATCATATGGAAGAGGTTATGAAGTTTTTTGAAAGTCATCACAAGGGAAAATACAAAGTGTACAACCTTTGCTCTGAAAGATTATACGATGCTTCACTGTTTGAAGGGAAGGTTGCTTGCTTCCCCTTTGATGACCATAATTGCCCTCCAATTCAACTCATAGTATCATTTTGTCAAAGTGCTTACTCATGGCTGAAGGAAGATATTGAGAATGTAGTAGTTGTTCATTGTAAAGCTGGCATGGCTAGAACAGGGCTCATGATATCGAGTCTTCTTCTTTACCTCAAGTTCTACCCCACTGCTGAAGAATCCATTGCTTATTACAACCAGAAACGGTGTATAGATGGCAAGGGTCTTGTTCTTCCAAGCCAAATTCGCTATGTAAAATATTTTGAACGAGTGCTCACATATTTCAATGGTGAAGTTCAACCTGGTAGGAGATGTATACTTCGGGGATTCCGTCTTCATAAATGCCCTTACTGGGTTCGACCATCTATTACAGTATCTGATCATAATGGAGTTCTCTTTTCAACAAAGAAGCATCCAAGGACAAAGGATATGATGCCAGATGATTTTTGGTTTAGTGCACCAAGGAAAGGAATCATGGTATTTGCTTTGCCAGGAGAAAGGGGTCTTACAGAGTTAAGCGGTGACTTCAAAGTTCACTTTCATGATCGTCATGGTGATTTTTACTGTTGGTTAAACACAACAATGATGGAGAACAGGCAAATTCTAAACACCGCTGATCTTGATGGTTTTGACAAGAGGAAACTGCCATGTCCAGGGTTTCAGGTTGAGGTTGTGGTGATGGATTATGATGCTCCAGTACCTTCCAAATCTAGAGGTGGCACAGTTACTGGAATGATCAGTCCAAGTGTGCTAGAAGGAAGACCAACTCAGACTAGTGACAGCAATGAACCTATACCATCAATGGAAGGCAATGAAGGCCAAGAAAAAGATGACATATTTTCAGACAGTGAAACTGAAGAAAATGGATTTTCAAAGATGAGACGGGAAAACGTCCCTCATACAGAAGAATCTGGTGCTGTATCTAGTGATTCCACTGAAAGATCTAAAGAACCAGTAGTGGAAAAGAGCAATTTGGTAAATATTACGCATGGCATTGAATCATCCTGTCAAGTATCTTCGAAAAATGAACCAAGTCCAGATGAAACCAATGCAAGTAAAGAACATATTCCGAATCAGAAAGATACTCAAGGTGATTCTAAAAGTGGCAAAAATCAGGGTGATGGCTCTAGCAGTTTAGAGACATCCTATATGCAGGAGGCTGGGAAGTCAGACACAGTTATAGCCAGTGATTTTAAGGCTATTGCTGCAGATGCATCGGTTTTCACATTTGGTGATGAAGAAGACTATGAAAGTGATTAA___TTGGTAAAAAATATATCACAGAAAATTCTGATGAAATAATTGATTGGTTCTGACAAATAAGGCTTGGTTTCAAAAACTTTGCAATGCAAGCAAATTATGACTTGCAGTTTCTTCAATTAGTTTATGTAAAGTACTGTATCTTCTAGGAAGACAGATTTTTTTCTCGTCCCACAAAGCCTGGAATTCTTGATTGTAGCATATGATTGGCTTGTTTTGTTATGAAAGCATTGTGCGTTCTGCTGTATCTATTCTATAGGAAGGCATGCCTATAACTTGTACTCAGTTTTAATATGGTGTTTAACACTTTGTTAGGCATGCTATCATTAGAAGAGGCCTTTGGTTAGATTCTCATTCATATTATTGTTTTGTGGGGTAGGTTATACCAAGTATATCTTTTGGATGCGCTCTTTTAGATAATGTAAATTATTTTAATCCATTATCTGCTTGAAGAAGAGGATTATTAGAAGTTCATGATT

Fln Alignment:

sp_v1.1_unigene540___METSRAEGSDPA----PIDTTSILPPSNPQSPNDHSTSRFSPSGFSTWAKSFKFSQPSAPEIAQPVDGK--KSPFGRLASGLGIRSSSKIPVVDDPTEDSTQVAVTQEGALGTITKGFLDTSKNAMRAVQIKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDISSGIFGYVEGFYRNHMEEVMKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIVSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFYPTAEESIAYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEVQPGRRCILRGFRLHKCPYWVRPSITVSDHNGVLFSTKKHPRTKDMMPDDFWFSAPRKGIMVFALPGERGLTELSGDFKVHFHDRHGDFYCWLNTTMMENRQILNTADLDGFDKRKLPCPGFQVEVVVMDYDAPVPSKSRGGTVTGMISPSVLEGRPTQTSDSNEPIPSMEGNE----GQEKDDIFSDSETEENGFSKMRRENVPHTEESGAVSSDSTERSKEPVVEKSNLVNITHGIESSCQVSSKNEPSPDETNASKEHIPNQKDTQGDSKSGKNQGDGSSSLETSYMQEAGKSDTVIASDFKAIAADASVFTFGDEEDYESD
B9RYC0_____________MDSGSVDSSTPSVKAPDIQPPTVADPGPDNSPRD-APSKLSAAGIASWAKSLKIPQPSAASQDDSPTGNTGKSTFARFTSGLGLRLSPKSPAADDSPEGTSPTSL-QPGFIGTITKGLVDTSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKLASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDAKGLVLPSQIRYVKYFERTLTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEDYWFSAPKKGVMVFALPGEPGLAEVAGDFKVHFHDRQGDFYFWLNTTMMENRKVLNTNDIDGFDKRKLPSPGFQVEVVLVDYSGTTPAGTNSETATNKSN----EG--SSAAPAPDPAPAVRSQNKDRGSTEKDDVFSDSEAEESVSSKFRQ---AQAASAGGKSATSTTSSSETNTKSDQIASLTHATEHF-----------SIGNTGSQQMHNSGQPKSDAVGGVVSGVEVNNSE---------------SEFKVMAADASVFTFGDDEDYESE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
2275	90		10		0.90298
2276	90			10	0.90298
2277	90		10		0.90298
2341	13			86	0.999973
2515		72	27		1.0
2557		30	61	7	1.0
2622		10		90	0.90298
2623		10		90	0.90298
2625	10	90			0.90298
2626			90	10	0.90298
2632		33	22	44	1.0
2633		33	66		1.0
2634	66	33			1.0
2635	11	22	44	22	1.0
2640	16	66			0.988813
2641	83		16		0.994512
2643	16	66	16		0.988813
2647			80	20	0.995493
2648		20	80		0.995493
2649		20		80	0.995493
2653		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain