SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene537

Length: 1548 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene537

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	1.0e-27	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	regulator of chromosome condensation family protein	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	82%
Blast2go	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAZ2

Fln msg:

Fln protein: MESDHTVLAWGSGEDGQLGVGNVEDKDWVCSIQALASKGKRVVSVVAGSRNSLAIYEDGQLFTWGWNQRGTLGHPPGSKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDGSRVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGKVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGLMVDIAAGGWHSTALTADAEVYAWGRGEHGRLGFGDDKSSKMLPQKVHLLAGQAIRQVSCGGTHSVARRADGRIFSYGRGDHGRLGYGRKVTTGHPMEVPIDIRPPKNAAENSGRWFVKLVACGGRHTLAIASWESEKL*

Protein Length: 391

Fln nts: ATGGGGCTGGACGACAGGGAAGAAAATGTTTAAAAGGACGTGTGCGCTTGCTTCATGGATCGGTAGCAGCATATAATTTGTTCCATTCGAGCGGTGGAAAGTGGAGTGTCGTTAGTGGA_-_ATGGAGTCAGATCACACAGTGCTCGCCTGGGGTTCTGGAGAGGATGGGCAGTTGGGAGTGGGGAATGTGGAGGATAAGGATTGGGTTTGCAGCATCCAAGCCCTGGCATCCAAAGGAAAGCGCGTCGTCTCTGTGGTGGCTGGCAGTAGAAACTCCCTTGCCATCTATGAAGACGGTCAGCTTTTTACGTGGGGATGGAACCAGCGGGGCACTTTGGGTCATCCTCCTGGAAGCAAGACTGAGAGCACTCCCACCCAGGTGAAGGCTCTGGAGAATGTAAAGATCGTTCAGGCAGCCATTGGGGGATGGCATTGTTTGGCAGTGGATGACCAAGGGCGGGCTTATGCTTGGGGTGGAAATGAGTATGGGCAATGTGGAGAAGAGCCAGAAAGGAAGGACGACGGCAGCAGAGTGTTAAGGCGGGATATAGCCATTCCTCAGCGTTGTGCTCCGCAACTTCGCGTTCGTCAGGTGGCAGCTGGAGGCACACACTCTGTAGTGCTTACACATAACGGGCATGTCTGGACATGGGGTCAACCGTGGCCTCCAGGGGACATAAAACAGATTTCTACTCCTGTTCGTGTTCAAGGCTTGGAAAATGTGCAGCTGATTGCTGTTGGTGCATTCCACAATCTGGCTCTTCTGGAGGAAGGGAAAGTCTGGGCGTGGGGAAACAATGAATATGGACAACTTGGCACAGGCGACACCCAGCCAAGATCACAGCCTGTTCCTGTCCAAGGACTTTCTGGTCTCATGGTTGATATTGCAGCAGGAGGATGGCATTCCACAGCATTAACAGCTGACGCAGAGGTATATGCATGGGGCAGAGGTGAGCATGGAAGATTAGGCTTTGGTGATGACAAAAGCAGCAAAATGTTACCACAAAAGGTGCATCTCCTTGCAGGTCAAGCCATTCGACAGGTGTCTTGTGGGGGAACACACTCAGTTGCACGCAGGGCTGATGGACGAATATTTTCTTATGGAAGAGGTGACCATGGTCGTCTTGGATATGGACGAAAAGTGACAACTGGGCACCCAATGGAAGTGCCAATAGACATACGACCCCCTAAAAATGCTGCCGAAAACAGTGGTCGCTGGTTTGTCAAGCTTGTTGCATGTGGAGGTCGACATACACTTGCTATTGCTTCATGGGAGTCAGAAAAGCTTTAA___ACGCTTAAATAAATGTTATGTAATGGGATTTGCTTCAAACACTCTTTTCCGGAAGAGTCTTTATTCCCAGTAACTGTAATAGTATTCGTTACACGGTAGTCAGGCTTTACTGTTATGCTGTTCTATAATGTCAACAAATTACAGGGATGGGTAGGATCTGTATTTAGTCAAATATTCCAATGAAAGACACATATTCGTAAGAACTTCAAAGTATTTGCTACGTGTATACATGCTTGTATTAATTTTGGGTTCTGAAGGG

Fln Alignment:

sp_v1.1_unigene537___MESDHTVLAWGSGEDGQLGVGNVEDKDWVCSIQALASKGKRVVSVVAGSRNSLAIYEDGQLFTWGWNQRGTLGHPPGSKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDGSRVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGKVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGL-MVDIAAGGWHSTALTADAEVYAWGRGEHGRLGFGDDKSSKMLPQKVHLLAGQAIRQVSCGGTHSVARRADGRIFSYGRGDHGRLGYGRKVTTGHPMEVPIDIRPPKNAAENSGRWFVKLVACGGRHTLAIASWESEKL
D5AAZ2_____________MESDHAVLAWGSGEDGQLGVGNMEDKDWVCSIQALASHGKRVVSVVAGSRNSLAICEDGQLFTWGWNQRGTLGHPPESKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGQAYAWGGNEYGQCGEEPERKEDGSKVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRSQPVPVQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGDDKSSKMVPQKVHLLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEVPIGIRPPKNAAENSGCWFVKLVACGGRHTLATASWESEEL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1210	83		16		0.999991
1329			10	90	0.90298
1333	90		10		0.90298
1334	90			10	0.90298
1335		88	11		0.923564
1342			11	88	0.923564
1343			11	88	0.923564
1345		88		11	0.923564
1347		11	88		0.923564
1349	88			11	0.923564
1350		11	88		0.923564
1500	16		16	66	0.988813
1501	20			80	0.995493
1502	20	80			0.995493
1550	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain