SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene532

Length: 1559 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene532 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9RCQ1_RICCO	-	-	71%
FL-Next	Isoform 2 of Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1	-	-	29%
Blast2go	proline transporter	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FKS8-2

Fln msg:

Fln protein: MTTNGNQYFPSHSEFDYNNSVEDDTHRDEDAGAAFVLQSKGNWWHAGFHLTTAIVGPTILTLPYAFGGMGWTFGLFSLTVAAAVTFYSYFLMARVLDNCEKQGRRHIRFRELASDILGSGWMFYFVVSIQTTINMGVGVGCILLGSECIQIMYNNLDSSGQLKLYHFIIIVALVMIFLSQLPSFHSLRHINLASLVLCLAYSLTVTIACILAGSSSEAPSKDYSIKGSTLTRVFNAFSSMSILGTIFGNGILPEIQATLAPPATGKMFKGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAPTWLLALSIGFILLQLFAIALVYSQVAYEIMEKQSADVKQSIFAMRNLLPRLALRSLYIIVCAFIAAMLPFFGDINALVGAIGFIPLDFILPMLLYNMSFKPPRNSATYWINNAIMVVFTGVGIMGTISSVRQITIDAKRFKLFSSDAFD*

Protein Length: 466

Fln nts: CCTTCTCTGCTTGACATGGCTTCTTTTTTTATAGTCTAAAGGG_-_ATGACAACTAATGGCAATCAGTACTTTCCCTCACACTCGGAATTTGATTACAATAACTCAGTTGAAGATGATACACACAGAGATGAAGATGCAGGCGCAGCGTTCGTCCTGCAGTCAAAGGGGAATTGGTGGCATGCAGGATTTCACTTGACAACTGCAATTGTAGGCCCAACAATTCTTACGCTCCCATACGCCTTTGGCGGGATGGGGTGGACATTTGGGCTCTTTTCCCTCACTGTGGCAGCTGCAGTCACCTTCTACTCCTATTTCCTCATGGCCAGAGTGCTTGATAATTGCGAGAAACAAGGTCGTCGCCACATTCGATTCCGTGAACTGGCAAGCGATATCCTTGGGTCTGGATGGATGTTTTATTTTGTCGTTTCGATTCAGACAACGATCAATATGGGGGTGGGAGTTGGATGCATCCTACTGGGTAGTGAGTGTATACAGATCATGTACAACAATTTGGATAGCAGTGGCCAGCTTAAGCTGTATCACTTTATAATCATCGTAGCTCTGGTTATGATATTTCTTTCTCAGCTACCATCATTTCATTCCCTCCGTCACATCAATTTAGCATCTTTGGTTTTGTGTTTGGCGTACAGTTTGACCGTGACCATTGCATGTATATTAGCAGGCAGTTCGAGTGAAGCCCCAAGTAAGGATTATTCAATCAAAGGTTCAACCCTCACTAGGGTATTCAATGCCTTCAGTTCCATGTCAATTCTGGGAACTATATTTGGCAACGGTATTCTTCCAGAGATACAGGCCACGCTCGCTCCTCCTGCAACAGGCAAGATGTTCAAGGGATTATGCATGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCGTTTGGTAACAATGCCAAGTCTAACGTATTGAAAAGTATCGTGCCAGATGAAGGCCCAACTCTCGCGCCCACTTGGCTCTTGGCCTTATCAATAGGCTTCATACTTTTACAGCTATTTGCAATAGCATTGGTGTATTCCCAAGTGGCCTATGAAATAATGGAGAAGCAATCAGCAGATGTCAAGCAGAGCATATTTGCAATGAGAAACTTGCTTCCTAGGCTGGCTCTGAGGTCTCTGTACATAATAGTTTGTGCCTTCATTGCAGCCATGCTGCCTTTCTTTGGAGACATTAATGCACTGGTAGGGGCCATTGGTTTCATACCTTTGGACTTCATCCTTCCCATGTTATTATACAACATGAGTTTCAAGCCACCTCGTAATTCAGCCACTTACTGGATCAACAACGCCATTATGGTGGTATTCACAGGTGTTGGAATTATGGGTACAATATCCTCAGTTCGGCAGATAACCATCGATGCAAAACGCTTCAAACTTTTCAGCAGTGATGCATTTGACTGA___CGATACAGAGTTAATAGAACTTTGGAATTCCTTACTGTAACACTGCAACATGAAAATTGAATTTGAATCACTTTGTGAAAATAAAACAAATACAAAGTTAATAGAAATTTGGATTCCCTAC

Fln Alignment:

sp_v1.1_unigene532___DTHRDEDAGAA----------FVLQSKGNWWHAGFHLTTAIVGPTILTLPYAFGGMGWTFGLFSLTVAAAVTFYSYFLMARVLDNCEKQGRRHIRFRELASDILGSGWMFYFVVSIQTTINMGVGVGCILLGSECIQIMYNNL-DSSGQLKLYHFIIIVALVMIFLSQLPSFHSLRHINLASLVLCLAYSLTVTIACILAGSSSEAPSKDYSIKGSTLT-RVFNAFSSMSILGTIF-GNGILPEIQATLAP----PATGKMFKGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAPTWLLALSIGFILLQLFAIALVYSQVAYEIMEKQSADVKQSIFAMRNLLPRLALRSLYIIVCAFIAAMLPFFGDINALVGAIGFIPLDFILPMLLYNMSFKPPRNSATYWINNAIMVVFTGVGIMGTISSVRQITIDAKRFKLFS
Q9FKS8-2___________DDHDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVP--GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYS---TIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKK-------PAWLIATANIFVVIHVIGSYQIYAMPVFDMME--TLLVKKLNFRPTTTL-RFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFYS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
578		66	33		0.997452
616		50		50	1.0
875	50	50			1.0
965	85	14			0.993533
966	85	14			0.993533
967	14	14			0.984337
968	85			14	0.993533
974	16		83		0.994512
975		16		83	0.994512
979		16		83	0.994512
980	16		83		0.994512
983	83		16		0.994512
984	83			16	0.994512
988	83	16			0.994512
989	66		16		0.988813
1237		66	33		1.0
1238	33			66	1.0
1242	33	66			1.0
1247	66	33			1.0
1248		33	66		1.0
1249	33		66		1.0
1251	66		33		1.0
1252	66		33		1.0
1256		33	66		1.0
1433	25		75		0.996473
1447	25		75		0.996473
1465		66		33	0.997452
1473	33			66	0.997452
1496	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain