SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene530

Length: 1997 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene530
TACATGGGGATGGGTAGAGCCATAGAGTTCGGAGAAGCATTATTAGGCCTTCTCTGATCAATTTCATAACTTGGCAATCATTTAGAGCAGGCCTTCCTGATGCAAAAAATGAGCATGGCCAAGAAGTTGTTCAAGGACAATATGGTTCATCTAAGCAGAGCCTGCAAATCCCTTAACGATGCTTGGCCAATTTCAATTTTCAAAGCTCGAACAAATAGAGAGCCTCCATCTCCATCTGCTATTAAAGTTTCCGATCATATTGATAATCATCAGTTTGTTTTGTCTGCAAAACGTGGATCAGAAGAAGTATTCGATAATCACATTTCAATCCAAATAAGATTGGCCGATGATTCCAAGGATCTGCAGAAACCAGTGGGCACCAGCTCCTTCCTCCATACAACCATCAACTTACTCGGTATCATGCTAGGGCTTGGACTGCTCTCAACACCGTATGCTTTAGAAGAAGGCGGATGGATGAGCCTTGGGGTATTGTTAACACTATCACTAATATGCTGCTACACTGCATTTGCTCTAGCTCGGTGCCTGGATTGCGATCCCAAGGTGTTAAATTATCAAGACATTGGGAACCAGGCTTTTGGAGTGAAGGGACGAATTATTGTTTCCACATTCCTATACGTTGAGATCATATTCATAGCAATTGGGTACACCATATCTCTGGGGGACAATATTGCTGCAATCTTCGTTGACACAGAGCTGAATTTATCAACATGGTTACACCTTACAACGCCTCGGTTGCTTACCATAATAGCGGTTGTCATCGTTCTACCGACCCTATGGGTTCGAGACTTGAGCTCCATTTCCTTCCTGTCGTGGGGTGGAGTTACCACTTCTCTTCTGCTGATGTTCACACTTACTTGGGCCGGTCTTTTTGGTGGAGTGGAGTTCTCCAGGAATATCCCTCTGATCAACACGCATAGAATACCAGTTTCCACTGGCCTTTATGCCTTCTGTTATGCTGGCCACGTTGTCTTTCCAACAATATACAGATCAATGAAGGAACCATCTCAGTTCGGCAGGGTAATTATTCTGAGCTTTGTAATCGTCACAGCGATATACAGTGGGTTTGCTTGCCTGGGTGGGACAATGTTTGGAAGCTCAGTCAGTGCTCAGATAACTCTGAACATGCCCAGACATTTGTTGGTAACAAAGTTTGCTCTTTGGGCAACTGTAATCACTCCAATGAGCAAATATGCTCTGCAGCTTTCACCTGTGGCAAGAGAGCTGGAGAACTTGGTGGCCTCTGCATGGAAACCCAAGCCCAGAGGGAGAATGGTCACAAGGATATTCATAGTATCCTTCCTCTTATTCAGCATTCTGGCAATGGCCCTTGCTTTGCCTTATTTTGGCTACGTGTTGGCTCTCACAGGATCATTTCTGAGCATCACCATGTCCATCATTCTTCCCTGCATCTTCTACATCAAAATCACTCGCAAAACTATGACTTTACCAATGGTGTTGATGAACGTTGCCTTCATAGTCGTGGGACTTGTTTTGAGTATATGTGGAACCATAGCCTCTGCTAAAAATCTCATCGATAGCATTCACAGCCATGCAAGGACTTGATCAATAACAGAGCCCTAATAGCTCTGAAATTATACTTGTTTTCCAAGACACAACCACCCAACCGCTGCTGCACTTGCGTTCTTCAGTCCTCCTCACATATATATCGAGTCCAACCATATATATATTTATCATATTCTTCCATCCCTTCGCTTCAGAAAATATGGCAACTCGTCATACTAAGAGCTTTCTGGTCTGCAATGGCGAAAAATTATGATCTATGTTTGAATAAGAATTAAAGAGAAATATGTGAATGGCAATTTTCTTATAGATGTTGTCCAGTGCACCAGAAATCGGTGTAGAACAGGACACAGAAATTCCGTGGTGAATGCTGCCTGGCCATTACTTGTAACAGAAATCATGTAATGGAAATAGTAACCTGCAAGAAAATAGGTCACCTCTCGTGCATTTCCTTG

Ace file of the UniGene sp_v1.1_unigene530

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter family protein, putative n=3 Tax=Oryza sativa RepID=Q53MQ4_ORYSJ	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	amino acid transporter	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 495 - 161

Fln protein: MQKMSMAKKLFKDNMVHLSRACKSLNDAWPISIFKARTNREPPSPSAIKVSDHIDNHQFVLSAKRGSEEVFDNHISIQIRLADDSKDLQKPVGTSSFLHTTINLLGIMLGLGLLSTPYALEEGGWMSLGVLLTLSLICCYTAFALARCLDCDPKVLNYQDIGNQAFGVKGRIIVSTFLYVEIIFIAIGYTISLGDNIAAIFVDTELNLSTWLHLTTPRLLTIIAVVIVLPTLWVRDLSSISFLSWGGVTTSLLLMFTLTWAGLFGGVEFSRNIPLINTHRIPVSTGLYAFCYAGHVVFPTIYRSMKEPSQFGRVIILSFVIVTAIYSGFACLGGTMFGSSVSAQITLNMPRHLLVTKFALWATVITPMSKYALQLSPVARELENLVASAWKPKPRGRMVTRIFIVSFLLFSILAMALALPYFGYVLALTGSFLSITMSIILPCIFYIKITRKTMTLPMVLMNVAFIVVGLVLSICGTIASAKNLIDSIHSHART*

Protein Length: 496

Fln nts: TACATGGGGATGGGTAGAGCCATAGAGTTCGGAGAAGCATTATTAGGCCTTCTCTGATCAATTTCATAACTTGGCAATCATTTAGAGCAGGCCTTCCTG_-_ATGCAAAAAATGAGCATGGCCAAGAAGTTGTTCAAGGACAATATGGTTCATCTAAGCAGAGCCTGCAAATCCCTTAACGATGCTTGGCCAATTTCAATTTTCAAAGCTCGAACAAATAGAGAGCCTCCATCTCCATCTGCTATTAAAGTTTCCGATCATATTGATAATCATCAGTTTGTTTTGTCTGCAAAACGTGGATCAGAAGAAGTATTCGATAATCACATTTCAATCCAAATAAGATTGGCCGATGATTCCAAGGATCTGCAGAAACCAGTGGGCACCAGCTCCTTCCTCCATACAACCATCAACTTACTCGGTATCATGCTAGGGCTTGGACTGCTCTCAACACCGTATGCTTTAGAAGAAGGCGGATGGATGAGCCTTGGGGTATTGTTAACACTATCACTAATATGCTGCTACACTGCATTTGCTCTAGCTCGGTGCCTGGATTGCGATCCCAAGGTGTTAAATTATCAAGACATTGGGAACCAGGCTTTTGGAGTGAAGGGACGAATTATTGTTTCCACATTCCTATACGTTGAGATCATATTCATAGCAATTGGGTACACCATATCTCTGGGGGACAATATTGCTGCAATCTTCGTTGACACAGAGCTGAATTTATCAACATGGTTACACCTTACAACGCCTCGGTTGCTTACCATAATAGCGGTTGTCATCGTTCTACCGACCCTATGGGTTCGAGACTTGAGCTCCATTTCCTTCCTGTCGTGGGGTGGAGTTACCACTTCTCTTCTGCTGATGTTCACACTTACTTGGGCCGGTCTTTTTGGTGGAGTGGAGTTCTCCAGGAATATCCCTCTGATCAACACGCATAGAATACCAGTTTCCACTGGCCTTTATGCCTTCTGTTATGCTGGCCACGTTGTCTTTCCAACAATATACAGATCAATGAAGGAACCATCTCAGTTCGGCAGGGTAATTATTCTGAGCTTTGTAATCGTCACAGCGATATACAGTGGGTTTGCTTGCCTGGGTGGGACAATGTTTGGAAGCTCAGTCAGTGCTCAGATAACTCTGAACATGCCCAGACATTTGTTGGTAACAAAGTTTGCTCTTTGGGCAACTGTAATCACTCCAATGAGCAAATATGCTCTGCAGCTTTCACCTGTGGCAAGAGAGCTGGAGAACTTGGTGGCCTCTGCATGGAAACCCAAGCCCAGAGGGAGAATGGTCACAAGGATATTCATAGTATCCTTCCTCTTATTCAGCATTCTGGCAATGGCCCTTGCTTTGCCTTATTTTGGCTACGTGTTGGCTCTCACAGGATCATTTCTGAGCATCACCATGTCCATCATTCTTCCCTGCATCTTCTACATCAAAATCACTCGCAAAACTATGACTTTACCAATGGTGTTGATGAACGTTGCCTTCATAGTCGTGGGACTTGTTTTGAGTATATGTGGAACCATAGCCTCTGCTAAAAATCTCATCGATAGCATTCACAGCCATGCAAGGACTTGA___TCAATAACAGAGCCCTAATAGCTCTGAAATTATACTTGTTTTCCAAGACACAACCACCCAACCGCTGCTGCACTTGCGTTCTTCAGTCCTCCTCACATATATATCGAGTCCAACCATATATATATTTATCATATTCTTCCATCCCTTCGCTTCAGAAAATATGGCAACTCGTCATACTAAGAGCTTTCTGGTCTGCAATGGCGAAAAATTATGATCTATGTTTGAATAAGAATTAAAGAGAAATATGTGAATGGCAATTTTCTTATAGATGTTGTCCAGTGCACCAGAAATCGGTGTAGAACAGGACACAGAAATTCCGTGGTGAATGCTGCCTGGCCATTACTTGTAACAGAAATCATGTAATGGAAATAGTAACCTGCAAGAAAATAGGTCACCTCTCGTGCATTTCCTTG

Fln Alignment:

sp_v1.1_unigene530___IYSGFACLGGTMFGSSVSAQITLNMPRHLLVTKFALWATVITPMSKYALQLSPVARELENLVASAWKPKPRGRMVTRIFIVSFLLFSILAMALALPYFGYVLALTGSFLSITMSIILPCIFYIKITRKTMTLPMVLMNVAFIVVGLVLSICGTIASAKNLIDSI
D5A864_____________IYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSS----DSWLVLWGIGIRTLLVISTVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIADAI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1354	10		90		0.90298
1461	10			90	0.90298
1481			10	90	0.90298
1517		20		80	0.999996
1678		90		10	0.90298
1736	42		57		1.0
1979		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain