SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene515

Length: 2049 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene515
GCCGAAAGAATTATGCATGCATGCATCCAGAAATTAATTGGTGAATTTCAGCATCCAGAGGAGGAAAATGTTGAAGCTTTGTGCAAACTGATGAGCACTATTGGTCATATGATTGATCATTCAAAGGCCAAGGAACATATTGATGCCTACTTCGATAGGATGACAAAAATGTCCAATAACCAAGCGCTTCCCTCTAGGCTGAGGTTCATGTTGAAGGATCTGATTGATCTGAGGAAGAATGGATGGCAACAAAGGAGGAAAGTTGAGGGCCCCAAGAAAATAGAAGAAGTGCATCGGGATGCTGTGCAAGAACTACATGGACAGGGAGGCCGCTCTCGAGGTACCAACATGGGACATTCGGGTCGGAGACTTGATCATGGTGTGCGAGGCGCTGCGGTTGCACCTTACATGGCAGGGGCACAGATGGGTTCACTTCCACATATGGGTGGGATTAAAGCGCCACAACCACATATGGGACCACGTGACCGTGGATTCACTAGTCAAGATGCTCGGATTGTGGATAGGGCTCAATTTGAAAATCGGTCTATGCCAAGCCCTTCAACACACAGAGCTTCTGATGATGGCCACTTGAGTCTTGGTCCTCAGGGAGGTCTTGGCAAGGGAATAGGAGGGAGGGCTCAGCCTCTGCCATATGCTAAGAGTGCTCTAGCAGATATTCCACCATTCACATCTTTGAGTACTAGACGAACAGGTGCAGGTCCGATTGCAGGTTGCAATTCTGACCGGATGCCAGTTGGTATGAGAGATGAAATTTTGACAAGGACTTGTGCTGCAGAAAAGCCTTCATTTGCAAAATATTGTGTCCAGGAAAGAAATGTTTTGGATAATGACAGACGAGAGTTTAAGAATTCATGCTCATCAGGTGACAGGGGTGGCAAGACTGCAAATGCTGAATTTCAACTGCAAGAACATTCTTCTCAAAGAACTCTGAGTTCACAACTCACTGAGGTTCAACTTAGGAAAAAGGCTGAAATGGCAATCGAAGAATATTACAGTGTGAGAGATTTGAAGGAGGCAGCTTCTTGTGTAGATGACCTTAAAGCACCATTGTTCCATTCAAATATGGTTTCGCTTTGGATGTTAGATTCTTTTGTCAGGAAAGATGTTGAAGTTGATCTTCTGGGGAATCTACTAACACATTTATGCAAGTCTGAGCCTTTCTTGCTAAATCAGGGACAACTTACTGAAGGGTTGGAGATTGTACTATTTTCATTGGAGGATGCTGTTGTTGATGCGCCCAAGGCTCCTGAGTTCCTTGGTAGGATTCTTGCAAAACTGGTTGTTGAGGGGATATTCTTTATTCAAGATATAGCCAGGGCAATCAAGGATGGAGGTACAGAGCCAGGAAGCTTATTAGAAAATGGTCATGCAATAGAAGTTCTTGGAACTGTTTTGGAAGATATTAAGAGACTGAAGGGGGAGCCTGTATTATCTGCTTTGTACAGCAAATCAGGAGTTCATTTAGAAAGCTTCATGCCCAAGAAACGAGGGGATTTTGAGGGATTTCTCAAGAAGAAAAACATTCAATGTTTGTATCCAGTCGGCATTAGTAGACATATGTAATTAAGAAAATTTCAAGGTAGCCTGCTCACAATTTTGCCTGATCAATTTTGTGGTTTATCTGTCCTCTCTCATGTTTAGTGAATGGTTGGTTAGTTTTTAGCTCATGCTCTGATTAAATATGCATAAAAATCTTACTGTCACCGTTTGTCTCTCCATCCTTTACATGATTTTGATGGAATAAAACAGTCTCTACCATTAGATAGTTAGTAATACATTATTGGCCTTAAAGGAGTTTCTTGTAGAGATGTACATGAAGTAAACAGAAGGCTCTGAAATATTACTGTTATACAGCCTATTAGCTTTTGTAACCTATCCAATTTTATATGCTCGAACACCCTGCACGGTGTGGGGCATTGTTAAGCTTTGCGCGGACGGATAGGAACCTACTTTTTATGATCTATTACCAAGGATTAAGATTAGCTGACATTAATGAGTTGGACATGCTTGCAAACTACACATCAAAGT

Ace file of the UniGene sp_v1.1_unigene515

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor 4g, putative; K03260 translation initiation factor eIF-4F	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	eukaryotic translation initiation factor 4g	-	-	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC81

Fln msg: your sequence is longer than subject: 524 - 395

Fln protein: MHACIQKLIGEFQHPEEENVEALCKLMSTIGHMIDHSKAKEHIDAYFDRMTKMSNNQALPSRLRFMLKDLIDLRKNGWQQRRKVEGPKKIEEVHRDAVQELHGQGGRSRGTNMGHSGRRLDHGVRGAAVAPYMAGAQMGSLPHMGGIKAPQPHMGPRDRGFTSQDARIVDRAQFENRSMPSPSTHRASDDGHLSLGPQGGLGKGIGGRAQPLPYAKSALADIPPFTSLSTRRTGAGPIAGCNSDRMPVGMRDEILTRTCAAEKPSFAKYCVQERNVLDNDRREFKNSCSSGDRGGKTANAEFQLQEHSSQRTLSSQLTEVQLRKKAEMAIEEYYSVRDLKEAASCVDDLKAPLFHSNMVSLWMLDSFVRKDVEVDLLGNLLTHLCKSEPFLLNQGQLTEGLEIVLFSLEDAVVDAPKAPEFLGRILAKLVVEGIFFIQDIARAIKDGGTEPGSLLENGHAIEVLGTVLEDIKRLKGEPVLSALYSKSGVHLESFMPKKRGDFEGFLKKKNIQCLYPVGISRHM*

Protein Length: 525

Fln nts: GCCGAAAGAATT_-_ATGCATGCATGCATCCAGAAATTAATTGGTGAATTTCAGCATCCAGAGGAGGAAAATGTTGAAGCTTTGTGCAAACTGATGAGCACTATTGGTCATATGATTGATCATTCAAAGGCCAAGGAACATATTGATGCCTACTTCGATAGGATGACAAAAATGTCCAATAACCAAGCGCTTCCCTCTAGGCTGAGGTTCATGTTGAAGGATCTGATTGATCTGAGGAAGAATGGATGGCAACAAAGGAGGAAAGTTGAGGGCCCCAAGAAAATAGAAGAAGTGCATCGGGATGCTGTGCAAGAACTACATGGACAGGGAGGCCGCTCTCGAGGTACCAACATGGGACATTCGGGTCGGAGACTTGATCATGGTGTGCGAGGCGCTGCGGTTGCACCTTACATGGCAGGGGCACAGATGGGTTCACTTCCACATATGGGTGGGATTAAAGCGCCACAACCACATATGGGACCACGTGACCGTGGATTCACTAGTCAAGATGCTCGGATTGTGGATAGGGCTCAATTTGAAAATCGGTCTATGCCAAGCCCTTCAACACACAGAGCTTCTGATGATGGCCACTTGAGTCTTGGTCCTCAGGGAGGTCTTGGCAAGGGAATAGGAGGGAGGGCTCAGCCTCTGCCATATGCTAAGAGTGCTCTAGCAGATATTCCACCATTCACATCTTTGAGTACTAGACGAACAGGTGCAGGTCCGATTGCAGGTTGCAATTCTGACCGGATGCCAGTTGGTATGAGAGATGAAATTTTGACAAGGACTTGTGCTGCAGAAAAGCCTTCATTTGCAAAATATTGTGTCCAGGAAAGAAATGTTTTGGATAATGACAGACGAGAGTTTAAGAATTCATGCTCATCAGGTGACAGGGGTGGCAAGACTGCAAATGCTGAATTTCAACTGCAAGAACATTCTTCTCAAAGAACTCTGAGTTCACAACTCACTGAGGTTCAACTTAGGAAAAAGGCTGAAATGGCAATCGAAGAATATTACAGTGTGAGAGATTTGAAGGAGGCAGCTTCTTGTGTAGATGACCTTAAAGCACCATTGTTCCATTCAAATATGGTTTCGCTTTGGATGTTAGATTCTTTTGTCAGGAAAGATGTTGAAGTTGATCTTCTGGGGAATCTACTAACACATTTATGCAAGTCTGAGCCTTTCTTGCTAAATCAGGGACAACTTACTGAAGGGTTGGAGATTGTACTATTTTCATTGGAGGATGCTGTTGTTGATGCGCCCAAGGCTCCTGAGTTCCTTGGTAGGATTCTTGCAAAACTGGTTGTTGAGGGGATATTCTTTATTCAAGATATAGCCAGGGCAATCAAGGATGGAGGTACAGAGCCAGGAAGCTTATTAGAAAATGGTCATGCAATAGAAGTTCTTGGAACTGTTTTGGAAGATATTAAGAGACTGAAGGGGGAGCCTGTATTATCTGCTTTGTACAGCAAATCAGGAGTTCATTTAGAAAGCTTCATGCCCAAGAAACGAGGGGATTTTGAGGGATTTCTCAAGAAGAAAAACATTCAATGTTTGTATCCAGTCGGCATTAGTAGACATATGTAA___TTAAGAAAATTTCAAGGTAGCCTGCTCACAATTTTGCCTGATCAATTTTGTGGTTTATCTGTCCTCTCTCATGTTTAGTGAATGGTTGGTTAGTTTTTAGCTCATGCTCTGATTAAATATGCATAAAAATCTTACTGTCACCGTTTGTCTCTCCATCCTTTACATGATTTTGATGGAATAAAACAGTCTCTACCATTAGATAGTTAGTAATACATTATTGGCCTTAAAGGAGTTTCTTGTAGAGATGTACATGAAGTAAACAGAAGGCTCTGAAATATTACTGTTATACAGCCTATTAGCTTTTGTAACCTATCCAATTTTATATGCTCGAACACCCTGCACGGTGTGGGGCATTGTTAAGCTTTGCGCGGACGGATAGGAACCTACTTTTTATGATCTATTACCAAGGATTAAGATTAGCTGACATTAATGAGTTGGACATGCTTGCAAACTACACATCAAAGT

Fln Alignment:

sp_v1.1_unigene515___YMAGAQMGSLPHMGGIKAPQPHMGPRDRGFTSQDARIVDRAQFENRSMPSPSTHRASDDGHXXXXXXXXXXXXXXXRAQPLPYAKSALADIPPFTSLSTRRTGAGPIAGCNSDRMPVGMRDEILTRTCAAEKPSFAKYCVQERNVLDNDRREFKNSCSSGDRGGKTANAEFQLQEHSSQRTLSSQLTEVQLRKKAEMAIEEYYSVRDLKEAASCVDDLKAPLFHSNMVSLWMLDSFVRKDVEVDLLGNLLTHLCKSEPFLLNQGQLTEGLEIVLFSLEDAVVDAPKAPEFLGRILAKLVVEGIFFIQDIARAIKDGGTEPGSLLENGHAIEVLGTVLEDIKRLKGEPVLSALYSKSGVHLESFMPKKRGDFEGFLKKKNIQCLYPVGISRHM
D5AC81_____________YMTGAQMGSLPHMGGIRGPQAHMGLRDRGFTSQDARFVDRAQFENRSMPNPSTHRASDDGHLTLGPQGGLGKGIAGRNQPLPYGRSALADVPPFTSVSNRRTGVGLISGCNSDRMPLGMRDDILTRTHGAEKPLFAKSCVQERNVLDNDRREFKNSYSSGDKGGKTANAEFQLQEHSSQRIPSSQLTEVQLRKKAEMAIHEYYSVRDIKEAALCVDDLKAPLFHPTMVSLWITDSFDRKDVEVDLLGNLLTYLCKTEPFLLNEEQLVEGLGTVLFSLEDTTVDAPKAPEFLGRILAKLVVEGILFIQNIARAIKVGGTEPGSLLENGYGIEVLGTVLEIIKRLKGEPILSALYSKSGVHLESFMPKKREDFEGFLKKKNIQCLYPVGISRHL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
620	90		10		0.90298
631	11		88		0.923564
905	25		75		0.996473
1013			16	83	0.994512
1014	83		16		0.994512
1015		83	16		0.994512
1124	16		83		0.994512
1613	83			16	0.999991
1659			15	84	0.999986
1689	60		40		1.0
2009	66			33	0.997452
2010		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
13	26	ATGC ATGC ATGC AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain