SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene512

Length: 1464 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene512

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin activating enzyme E1-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme atg7; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	ubiquitin activating enzyme e1-like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	senescence	GO:0010149	Biological Process	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	71%
Blast2go	Molybdenum cofactor biosynthesis, MoeB	IPR009036	-	71%
Blast2go	NAD(P)-binding domain	IPR016040	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94CD5

Fln msg: your sequence is shorter than subject: 383 - 697

Fln protein: RLINLATEMDPKRLAISAADLNLKLMRWRALPSLDLKCLSSTKCLLLGAGTLGCQVARNLMAWGVRHITLVDRGHVAMSNPLRQSLYTHDDCLNGGQLKVNAAAENLKCIFPGVEAEGVSMTIPMPGHFVTADELSNIRKDCMQLKDLIDSHDVIFLLTDTRESRWLPTLLCADANKVAITAALGFDTFLVMRHGAGVTLSIDTDTPKMLGQDGPSEFEDLAASASERREQRLGCYFCSDVVAPVDSTRNLTLDQQCTVTRPGLAPIAAALAVELTVSILHHPFRINAPADEAGSDDSSVEQPLGILPHQIRGDIAHFSQMLIKGYASKRCIACAETIVSEYRARGIDFVLEAINQPTYLEDLTGLTELMNLAKHFNLDWED*

Protein Length: 384

Fln nts: CTAGATTGATTAATCTTGCAACTGAGATGGATCCCAAGAGGTTGGCTATATCAGCAGCAGATCTAAATTTGAAACTTATGAGATGGCGTGCTCTACCATCTCTAGACTTGAAATGCTTATCATCCACAAAATGCCTTCTTCTTGGAGCTGGTACACTTGGTTGTCAGGTCGCTCGTAATCTTATGGCTTGGGGCGTTAGACATATCACACTAGTTGACCGTGGTCATGTGGCTATGTCGAATCCTCTGCGTCAGTCTTTATATACTCATGATGACTGCTTGAATGGAGGTCAACTAAAAGTCAATGCAGCAGCAGAGAATTTGAAGTGCATTTTTCCTGGTGTGGAGGCAGAGGGTGTTTCCATGACCATTCCAATGCCTGGACATTTTGTGACAGCAGATGAACTATCGAATATTAGGAAGGACTGTATGCAGCTTAAAGATTTGATTGACAGCCATGATGTCATTTTCTTGCTGACGGATACAAGAGAAAGTCGTTGGCTTCCAACACTTCTATGTGCTGATGCTAACAAGGTAGCAATCACAGCTGCTTTAGGATTTGATACCTTCCTTGTGATGCGACATGGTGCTGGTGTAACCTTATCAATTGATACCGACACTCCGAAAATGTTGGGACAGGATGGCCCTTCAGAATTTGAGGATCTGGCAGCTTCTGCATCAGAACGCAGAGAACAAAGATTAGGCTGCTATTTTTGCAGTGATGTTGTTGCTCCAGTGGATTCAACCCGGAACCTAACACTGGACCAACAGTGCACCGTAACACGTCCTGGGCTTGCTCCTATTGCCGCAGCTCTTGCAGTGGAGCTTACAGTGTCCATTCTTCACCATCCTTTTCGGATTAATGCTCCAGCAGATGAGGCAGGTTCTGATGATTCTAGTGTTGAACAACCTCTTGGTATTTTGCCCCATCAAATCCGTGGGGATATTGCTCACTTTTCGCAAATGTTAATTAAAGGTTATGCATCTAAAAGATGTATAGCCTGCGCTGAAACGATTGTGTCAGAATACCGTGCCAGAGGAATCGACTTTGTATTGGAGGCTATAAATCAACCAACTTATCTGGAAGATCTTACAGGACTTACAGAATTAATGAATCTTGCGAAGCATTTCAACTTAGATTGGGAGGATTGA___AATCAAGTGAATGATGATGTGGAGATCTAGATCTCAATTACTTGACCATGAAATAACCACGTTTATTTTGCAGCATTCATCGCAAGACTGCTTATCTTCTTCTCCATTTATCATAAAATCAGTACATTGCTGAATCACTGAAGGCATAGAAAACAAGCTGTTCCATGGAAGGAGTAATGTGAAACTAGAAGATATAAATGAAAAGTATTTACAACAACAGTTCTATCGATTGGTACTAGTGTTAGATGAATGGATATAGCTTTGCTTTTTTCAGAGTACCATACATGTTTGAGTTGATGAGTAGATTGACAAA

Fln Alignment:

sp_v1.1_unigene512___RLINLATEMDPKRLAISAADLNLKLMRWRALPXXXXXXXXXXXXXXXGAGTLGCQVARNLMAWGVRHITLVDRGHVAMSNPLRQSLYTHDDCLNGGQLKVNAAAENLKCIFPGVEAEGVSMTIPMPGHFVTADELSNIRKDCMQLKDLIDSHDVIFLLTDTRESRWLPTLLCADANKVAITAALGFDTFLVMRHGAGVTLSIDTDTPKMLGQDGPSEFEDLAASASERREQRLGCYFCSDVVAPVDSTRNLTLDQQCTVTRPGLAPIAAALAVELTVSILHHPFRINAPADEA-----GSDDSSVEQPLGILPHQIRGDIAHFSQMLIKGYASKRCIACAETIVSEYRARGIDFVLEAINQPTYLEDLTGLTELMNLAKHFNLDWED*NQVNDDVEI
Q94CD5_____________RSISLANSMDPTRLAVSAVDLNLKLMRWRALPSLNLNVLSSVKCLLLGAGTLGCQVARTLMGWGIRNITFVDYGKVAMSNPVRQSLYNFEDCLGRGEFKAVAAVKSLKQIFPAMETSGVVMAIPMPGHPISSQEEDSVLGDCKRLSELIESHDAVFLLTDTRESRWLPSLLCANANKIAINAALGFDSYMVMRHGAGPT-SLSDDMQNL--------------DINKTNTQRLGCYFCNDVVAPQDSMTDRTLDQQCTVTRPGLAPIAGALAVELLVGVLQHPLGINAKGDNSSLSNTGNNDDS---PLGILPHQIRGSVSQFSQITLLGQASNSCTACSETVISEYRERGNSFILEAINHPTYLEDLTGLTELKKAANSFNLDWEDDDTDDDDVAV

SNPs (tot: 3)

Position	A %	C %	T %	Probability
725		10	90	0.90298
852		33	66	1.0
1362	66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain