SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene508

Length: 1827 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene508

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-damage repair protein drt111, putative; K12840 splicing factor 45	-	-	79%
FL-Next	sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P42698

Fln msg: Separated hits, possible frame ERROR between 674 and 1028, your sequence is longer than subject: 424 - 387

Fln protein: MLGGGLYGDLPPPSSSSSTAAEEENNSNNSMWSSSAKMAPSALRKPTTTLFASPQSISRNQQPSSSNKPKILSSSQPQPSSRVTYNDGTLSPLEASADMKPLSPPVSNQPALVGVTSTVVEEYDPSRPNDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDKRAGVIVNASETRPEKKIKGANISAPPTKVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPDFPVDEAVRIFVQFERSEQTTKALVDLDGRFFAGRVVHATFYDEEKFNRNELAPAPGEIPGYPQFDK*

Protein Length: 425

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTAAGCCCTTGGCCTGTGCAGGACGAGGGTGAATTGGAACCAACCTTCGAAACCCAAAGAGGACTTGGGAAATACAGAAGCATATCCTTGTCATGCTTTTACAAAAGACCGGCGCTCCTTCTGTGTGTGAAGTTACAGAGGACGATGGCGAGGAGCAGGAAGAGAGAAGAAAAAGCTCAGAAGATCCGAGTCTGAGTGACAAAAACCCTTGTGAAAAGTAAGCAACAATATATACATTCATCAGATCTTGAAAT_-_ATGTTGGGCGGCGGCCTGTATGGGGACTTACCCCCGCCGTCTTCGTCCTCATCTACGGCGGCCGAAGAAGAAAACAATAGCAACAATTCAATGTGGTCGAGCAGTGCGAAGATGGCTCCTTCCGCTCTGCGGAAGCCTACCACAACACTTTTTGCATCCCCGCAATCCATCTCGAGGAACCAGCAGCCCTCCAGCAGCAACAAGCCCAAAATTTTGTCCTCCTCCCAGCCCCAGCCTTCTTCCAGGGTCACATACAACGATGGAACCCTGAGCCCGCTGGAGGCTTCCGCCGACATGAAGCCCCTCTCACCCCCAGTATCCAACCAGCCGGCCTTGGTGGGCGTCACCTCCACTGTCGTAGAAGAGTACGACCCTAGCCGCCCCAACGATTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGACCGCCGCGCAGAGGATGATGGCAAAGATGGGGTGGAAGGAGGGCCAGGGTTTGGGCAAGCAGGAGCAGGGGATCACCACGCCTCTCATGGCCAAGAAGACTGATAAGAGGGCAGGTGTTATTGTCAATGCCAGCGAGACCAGGCCCGAAAAGAAGATTAAAGGCGCCAATATCAGTGCCCCGCCTACCAAGGTTCTGCTACTTAGAAACATGGTTGGTCCAGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCCTCGGAGTGTGCAAAGTATGGAACAGTGACCCGTGTGCTGATCTTTGAGATCACTGAACCAGATTTCCCAGTGGATGAAGCCGTTCGAATCTTTGTGCAGTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGTCGTTTTTTCGCTGGCAGGGTAGTCCATGCAACCTTCTATGATGAAGAGAAGTTTAACAGGAATGAATTGGCACCTGCACCGGGAGAGATACCTGGTTACCCTCAGTTTGACAAATAG___TGAATGGTTGAAATCTCAAGATTTGCCTCGTTTGGCCTGATCATAGAAATTCGCTGTAGATTATTGTGACATGTGCAATCATTTTCATTCATGGGGGTCTCAACCTTTCGATGTACCCCTACCTTTTAAAGGTTTTGTTATGTCCTCAAGATGCATATGGCATTATTATTTAGGACTTTCAGAATCTCTGACATCTGCTGAGGTTGTACATGAAGCATGCAGAATATCTATCATGTTCATTTCTGAGGAGAATTATACCAATAATTTTAGATTTA

Fln Alignment:

sp_v1.1_unigene508___KMAPSALRKPTTTLFASPQSISRNQQXXXXXXXXXXXXXQPQPSSRVTYNDGTLSPLEASADMKPLSPPVSNQPALVGVTSTVVEEYDPSRPNDYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTAAQRMMAKMXXXXXXXXXXXXXXITTPLMAKKTDKRAGVIVNASETRP----EKKIKGANISAPPTKVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPDFPVDEAVRIFVQFERSEQTTKALVDLDGRFFAGRVVHATFYDEEKFNRNELAPAPGEIPGY
P42698_____________KMAPPTLRKPPA--FAPPQTILRPLNKPKPIVSAPYKPPPPSNSSQ-----SVLIPANESAP--------SHQPALVGVTSSVIEEYDPARPNDYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTAAQRMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
742			85	14	0.993533
895	16		83		0.994512
905	50	50			1.0
915	60		40		1.0
922		75		25	0.996473
970			75	25	0.996473
1048		25		25	0.995533
1053	25		75		0.996473
1068	33		66		0.997452
1127	80			20	0.995493
1129	80		20		0.995493
1130	80		20		0.995493
1236		14		85	0.999981
1237	85	14			0.999981
1254	82	17			1.0
1290		83		16	1.0
1300	16		83		1.0
1335		19		80	1.0
1359	84			15	1.0
1371		84		15	1.0
1410	80		13		0.999961
1413			20	80	1.0
1435			72	27	1.0
1494		75		25	1.0
1497	25		75		1.0
1509	88			11	0.923564
1511		88	11		0.923564
1518	22		66	11	0.999999
1519			88	11	0.923564
1520			88	11	0.923564
1521	66		22		0.999999
1523	88	11			0.923564
1525	88			11	0.923564
1526		11		88	0.923564
1530	22			77	0.999999
1533		12		87	0.992554
1583		33		66	0.997452
1606		33	66		0.997452
1779	87	12			0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
750	761	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain