SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene500

Length: 1986 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene500
ATGGGGATCTGCTGTGAGAATAGCTGTGTATCTCTGCGCTCATCGCAAAATCCAAGTTCCTCTCAGAGCCCTCCATGGAAGCGCAGTCAGTTTCAGTTGATGAGCAGCGTCCCCATGCCCTACTATTTTCATTTCCGTTACAGGGCCACATCAAGCCTTTCATGAACTTGGCCAAGATTTTGTCCAGCCGGGGCTTCTATGTCACTTTTGTCAGTACCGAATTTGTTGTAAAGCGCCTCGCAGAATGTGGTGAAAGTATCGCCCATCGTGATTCGATGGTGTGCAGCGAGAACGATGATGTATGTAACATAAAATTCGAAACAGTGCCCGACGGACTGCCTCCCCACCACGATCGTAGTACTCAGAATCTTGCGGAGCTCTTCCAATCCATGGAAGAGAACGCTTATATTCACTTCCGCAAGTTGATGGAGAAGCTCCAGAATCTTCGGGAAGTCCCTCCCGTGACGTTTATAGTGACGGATGGACTTTTATCAAAGACGCAGGATATTGCGAACGAATATGGCGTTCCCAGGGTAGCCTTCTGGACGACTAGTGCCTGCGGGTTCATGGGGTATTTCTCCATGCCTCTTCTAATCAAGAAGGGATATCTTCCTCTGAAAGATGAGAGCTGCCTCAGCAGTGAGTATCTGGATGAAGTGAGAATAACTTGCATCCCGGGAATGCCACCGTTGCGGTTGAAGGAGCTGCCCAGTTTCTGCTTAGTTACTGATCCATCGGATTTTTTCTTTCAAAATGCAATAAATCAAGTCCAAGGCACGTTAGCAGCTGATGGATTAATACTCAACACATTCGATGAGCTCGAAGGCCCAGTCTTGGAGGCACTCTCACTTCACTTCCCTGTCTATGCCATTGGTCCTCTGCTGCTCTCTCAGTCATTTCATTGTAAGGATAAGGGTGGATCCTCAGATGAATTAAGTTTGTGGAAAGAAGAAAGTGGGTGTCTCACATGGTTGGATACTCGGAAGCCATGCTCTGTCTTGTACGTTTGTTTGGGAAGCCTGGCAGTAATGTCTAATGAACAACTCCTGGAATTTGCTTGGGGATTGGCTTCCAGCAACCAATCCTTCTTGTGGGTTGTGAGGCCAGATATAGTTCATGGTGAATCTGCCATATTACCCAAAGAGTTCGTTGAGGAAACCAAGGATAGAGGTGTGCTGGTGGGTTGGGCGCCTCAGATAAAGGTTCTATCGCACCCATCTGTGGGAGGATTTCTAACTCACAGCGGTTGGAACTCCACATTGGAAAGCATTAGTGCGGGTGTGCCAATGATGTGCTGGCCCTTCTTCGCCGAGCAAGAAACAAATGCTAAATTTGTGTGTGAAGAGTGGGGAATCGGAATGCAGGTGAAGAAAATGGTGAAGAGAGAAGAGTTGGCGATACTCGTGAGGAATTTGATCAAAGGTGAAGAAGGAGATGAAATGAGGGAAAAAATTGGAAAACTGAAGGAAACTGCCAAGCGAGCAGTTAGTGAAGGAGGCTCCTCTAAGAACAACTTAGACAAGTTACTCCACCATATATTCCTGAGGGGAATGCATCAAATGATAGTCCAGAATGTTGAAGCAAACAATTAGTCAGAAGAGAACATGTAGGACGAACGAAACATCCCAGTACCCCAAGCGTTCATATTTCTGCATTTCGCATTAAATTTACTTCGTATTGTTCCGCACATATGTATTTTCAGGTTGTCAGGTTTCCCCAGAGTTGAACCTCATTTTCAATTAGATTGTTTCACGTCTTTACGGCGCATGGTGTTGTGAGCCAATATTTTTTTCGTGAGAACTATGGAATGATGGAAGCTGTAAAAGATTTGGAATAATGTTTGTAATAGTATATAGGTAATATATAGATAGGATTGATTGGTTGGTTGTTTGTTTTGGTTTGAAATTTGTTGGATGTAATAAGTATTATTTATGTGATTTGTAATTTTGCTTTAAATGTAATATATTTTTAATTTTGTTTGTATTC

Ace file of the UniGene sp_v1.1_unigene500

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucuronosyltransferase, putative n=2 Tax=Ricinus communis RepID=B9SIN1_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	unknown [Picea sitchensis]	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUG6

Fln msg:

Fln protein: MEAQSVSVDEQRPHALLFSFPLQGHIKPFMNLAKILSSRGFYVTFVSTEFVVKRLAECGESIAHRDSMVCSENDDVCNIKFETVPDGLPPHHDRSTQNLAELFQSMEENAYIHFRKLMEKLQNLREVPPVTFIVTDGLLSKTQDIANEYGVPRVAFWTTSACGFMGYFSMPLLIKKGYLPLKDESCLSSEYLDEVRITCIPGMPPLRLKELPSFCLVTDPSDFFFQNAINQVQGTLAADGLILNTFDELEGPVLEALSLHFPVYAIGPLLLSQSFHCKDKGGSSDELSLWKEESGCLTWLDTRKPCSVLYVCLGSLAVMSNEQLLEFAWGLASSNQSFLWVVRPDIVHGESAILPKEFVEETKDRGVLVGWAPQIKVLSHPSVGGFLTHSGWNSTLESISAGVPMMCWPFFAEQETNAKFVCEEWGIGMQVKKMVKREELAILVRNLIKGEEGDEMREKIGKLKETAKRAVSEGGSSKNNLDKLLHHIFLRGMHQMIVQNVEANN*

Protein Length: 507

Fln nts: ATGGGGATCTGCTGTGAGAATAGCTGTGTATCTCTGCGCTCATCGCAAAATCCAAGTTCCTCTCAGAGCCCTCC_-_ATGGAAGCGCAGTCAGTTTCAGTTGATGAGCAGCGTCCCCATGCCCTACTATTTTCATTTCCGTTACAGGGCCACATCAAGCCTTTCATGAACTTGGCCAAGATTTTGTCCAGCCGGGGCTTCTATGTCACTTTTGTCAGTACCGAATTTGTTGTAAAGCGCCTCGCAGAATGTGGTGAAAGTATCGCCCATCGTGATTCGATGGTGTGCAGCGAGAACGATGATGTATGTAACATAAAATTCGAAACAGTGCCCGACGGACTGCCTCCCCACCACGATCGTAGTACTCAGAATCTTGCGGAGCTCTTCCAATCCATGGAAGAGAACGCTTATATTCACTTCCGCAAGTTGATGGAGAAGCTCCAGAATCTTCGGGAAGTCCCTCCCGTGACGTTTATAGTGACGGATGGACTTTTATCAAAGACGCAGGATATTGCGAACGAATATGGCGTTCCCAGGGTAGCCTTCTGGACGACTAGTGCCTGCGGGTTCATGGGGTATTTCTCCATGCCTCTTCTAATCAAGAAGGGATATCTTCCTCTGAAAGATGAGAGCTGCCTCAGCAGTGAGTATCTGGATGAAGTGAGAATAACTTGCATCCCGGGAATGCCACCGTTGCGGTTGAAGGAGCTGCCCAGTTTCTGCTTAGTTACTGATCCATCGGATTTTTTCTTTCAAAATGCAATAAATCAAGTCCAAGGCACGTTAGCAGCTGATGGATTAATACTCAACACATTCGATGAGCTCGAAGGCCCAGTCTTGGAGGCACTCTCACTTCACTTCCCTGTCTATGCCATTGGTCCTCTGCTGCTCTCTCAGTCATTTCATTGTAAGGATAAGGGTGGATCCTCAGATGAATTAAGTTTGTGGAAAGAAGAAAGTGGGTGTCTCACATGGTTGGATACTCGGAAGCCATGCTCTGTCTTGTACGTTTGTTTGGGAAGCCTGGCAGTAATGTCTAATGAACAACTCCTGGAATTTGCTTGGGGATTGGCTTCCAGCAACCAATCCTTCTTGTGGGTTGTGAGGCCAGATATAGTTCATGGTGAATCTGCCATATTACCCAAAGAGTTCGTTGAGGAAACCAAGGATAGAGGTGTGCTGGTGGGTTGGGCGCCTCAGATAAAGGTTCTATCGCACCCATCTGTGGGAGGATTTCTAACTCACAGCGGTTGGAACTCCACATTGGAAAGCATTAGTGCGGGTGTGCCAATGATGTGCTGGCCCTTCTTCGCCGAGCAAGAAACAAATGCTAAATTTGTGTGTGAAGAGTGGGGAATCGGAATGCAGGTGAAGAAAATGGTGAAGAGAGAAGAGTTGGCGATACTCGTGAGGAATTTGATCAAAGGTGAAGAAGGAGATGAAATGAGGGAAAAAATTGGAAAACTGAAGGAAACTGCCAAGCGAGCAGTTAGTGAAGGAGGCTCCTCTAAGAACAACTTAGACAAGTTACTCCACCATATATTCCTGAGGGGAATGCATCAAATGATAGTCCAGAATGTTGAAGCAAACAATTAG___TCAGAAGAGAACATGTAGGACGAACGAAACATCCCAGTACCCCAAGCGTTCATATTTCTGCATTTCGCATTAAATTTACTTCGTATTGTTCCGCACATATGTATTTTCAGGTTGTCAGGTTTCCCCAGAGTTGAACCTCATTTTCAATTAGATTGTTTCACGTCTTTACGGCGCATGGTGTTGTGAGCCAATATTTTTTTCGTGAGAACTATGGAATGATGGAAGCTGTAAAAGATTTGGAATAATGTTTGTAATAGTATATAGGTAATATATAGATAGGATTGATTGGTTGGTTGTTTGTTTTGGTTTGAAATTTGTTGGATGTAATAAGTATTATTTATGTGATTTGTAATTTTGCTTTAAATGTAATATATTTTTAATTTTGTTTGTATTC

Fln Alignment:

sp_v1.1_unigene500___MEAQSVSVDEQRPHALLFSFPLQGHIKPFMNLAKILSSRGFYVTFVSTEFVVKRLAECGESIAHRDSMVCSENDDVCNIKFETVPDGLPPHHDRSTQNLAELFQSMEENAYIHFRKLMEKLQNLREVPPVTFIVTDGLLSKTQDIANEYGVPRVAFWTTSACGFMGYFSMPLLIKKGYLPLKDESCLSSEYLDEVRITCIPGMPPLRLKELPSFCLVTDPSDFFFQNAINQVQGTLAADGLILNTFDELEGPVLEALSLHFPVYAIGPLLLSQSFHCKDKGGSSDELSLWKEESGCLTWLDTRKPCSVLYVCLGSLAVMSNEQLLEFAWGLASSNQSFLWVVRPDIVHGESAILPKEFVEETKDRGVLVGWAPQIKVLSHPSVGGFLTHSGWNSTLESISAGVPMMCWPFFAEQETNAKFVCEEWGIGMQVKKMVKREELAILVRNLIKGEEGDEMREKIGKLKETAKRAVSEGGSSKNNLDKLLHHIFLRGMHQMIVQNVEANN
A9NUG6_____________MESQSIPVDQQRPHAVLFPFPLQGHIKPFMNLAKILSNRGFYVTFVSTEFVQKRLAESGGGLTQHDS-----------ITFETVPDGLPPQHGR-TQNIPELFKSMEDNGHIHFHELMEKLQNLPNVPPVTFIVTDGLLSKTQDIANQYGVPRVAFWTTSACGFMAYFSMPLLINKGYLPLKDESCLTSEYLDEPRISCIPGMPQLRLRDLPSFCLVTDSSDIMFRNGISQTQGTLPAAALILNTFDELEGPVLEALSVHFPVYAIGPLLLSQSFHCNDKDGSFDELSMWKEESSCLTWLDTRKPSSVMYVCLGSLAVLSNEELLEFAWGLASSNQSFLWVVRTDIVHGESAILPKEFIEETKNRGMLVGWAPQIKVLSHPSVGGFLTHSGWNSTLESISAGVPMMCWPFFAEQQTNAKFVCEEWGIGMQVNKKVKREELAMLVRNLIKGEEGGEMRRKIGKLKETAKRAVQKGGSSNNNLDKLLSQIFLKSMHQMIVQNVEADS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
38	33		66		0.998671
54	33		66		1.0
532	25		75		1.0
890	25			75	0.997389
891		75		25	0.997389
892	75		25		0.997389
894			25	75	0.997389
1075		16	83		0.996358
1076		83		16	0.996358
1182	11		88		0.923564
1307		57		42	1.0
1350			75	12	0.995232
1716		88	11		0.923564
1734			10	90	0.90298
1735			10	90	0.90298
1736			10	90	0.90298
1784	25			75	0.996473
1786	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain