SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene497

Length: 2213 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene497
CGTCGTGACCTTGGCTGTCACTCATTTTAGTCAGTTCAAGGGGAGCGCTCTGTTAGAAGAAATCCTCTTGTAAATTGTTGCAAGAACGACAACACCGACTCCAGGACCAATGGATTTACTGCAGAATTACCAGGATGACAGTGAAGATTCGAACCCAGAACTTAGAAATCATCCACCGCTGGAAGACGCCACGGCAACTTCGGCGCCCGCAGGAGTCGAAAACGAGATCTCTTCTTCACCAGACTCCTCCCCTTTGCGCCTCGCATTGCCAGCAAAATCTTGCGCACCGGATGTGGACGAAACCCTAATGGCCCTCGGGGTTCCAGGCTCCGAGAAAAAAACAATCACAACAAGCCTATCGACCCTACGCAGCACAGCGTGACGTTCAATCCAAGCTATGATCAGCTCTGGGCTCCGCTTTACGGTCCTGCTCATCCTTACGCCAAGGATGGAATCGCTCAGGGCATGAGAAACCACAAGCTCGGTTTTGTGGAGGATTCGGCCATCGAACCCTTCATGTTCGACGAGCAGTACAATACTTTTCACAGGTATGGTTACGCTGCCGACCCTTCTGCTTCTTTGGGTAGTCATATTGTTGGTGATTTAGAGTCTTTGAAGAGAAACGATGGAGCATCTGTGTATAATTTACCTAAACGTGAGCATAAGAAGCAGAAACTCGAGAAAAAAATGATACAGAAGGACGAGAACGAGGAGGAGGAAAAAGAAGTTGGAGAGGAAGTTGACAATCCTTCCACGGAAGAGTGGCTGAAGAAGAATAGGAAAAGCCCTTGGGCTGGTAAGAAGGAGGGTTTGCAGACTGAATTGACTGAGGAGCAGAAGAAGTATGCTCAGGAACATGCTGAGAAGAAGGGTGACAGGGAGAAGGGTGAGAAGGTTGAGATTGTAGATAAGACTACTTTCCATGGCAAGGAGGAGAGGGACTACCAGGGGAGGTCTTGGATTGATCCTCCCAAGGATGCCAAGGCAACCAATGATCATTGTTATATTCCGAAGAGGTGGGTCCATACATGGAGTGGGCATACAAAGGGGGTTTCGGCGATCCGATTCTTCCCCAAGTATGGCCATCTGTTGTTATCTGCTGGCATGGATACGAAGGTGAAGATCTGGGATGTTTTTAACAGTGGGAAATGCATGAGGACTTACATGGGTCATTCGAAGGCGGTGCGTGACATATCATTCAGCAATGATGGTTCTAGGTTTTGAGTGCTGGGTATGATAGGAATATCAAATTGTGGGATACGGAGACAGGGAAGGTGATTTCGACATTCTCCACAGGGAAGATACCATATGTTGTGAAGCTCCACCCAGACGAGGATAAGCAGAATGTGCTACTGGCAGGTATGAGTGATAAGAAGATCGTGCAGTGGGACATGAATAGTGGTGAGATCACTCAAGAGTATGATCAGCATCTTGGTGCTGTGAATACCATTACTTTTGTAGATAATAATAGGAGGTTTGTGACATCGAGCGATGACAAGTCCCTGAGGGTTTGGGAATTCGGCATTCCTGTGGTCATTAAATACATCAGTGAGCCTCACATGCATTCAATGCCTTCGATTTCTCTTCATCCAAACACGAATTGGCTTGCTGCACAGAGTTTGGATAATCAAATTCTGATCTACAGTACAAGGGAGAGGTTCCAACTCAATAAGAAGAAGAGGTTTGCGGGGCATATTGCAGCAGGTTATGCTTGCCAAGTTAACTTTTCACCCGATGGGCGATTTGTTATGTCCGGAGATGGTGAGGGCAGATGTTGGTTCTGGGATTGGAAAACTTGTAAAGTCTTCAGAACTTTAAAATGCCATGAGAACGTTTGCATAGGCTGTGAGTGGCATCCTCTGGAACAGAGCAAGGTTGCTACATGTGGCTGGGACGGAATGATTAAATATTGGGATTAAATTCAGTACAATAAATGCAAGATCTCTAACTCAACTTGAGTATTTATGAAGGTGCCGTATCAAAAGATTGGTACTTCTTTATGGACACACAAGATCGTAAGCATGGCTGAATTGACTTGAGGAAAATGAAACGACCTTGTTAAATGTAATGATGTAGAGGCCTGATGTGGTACCTGGTTGTCTACCAGACTATACCCTCTGTCCTACCTTCCGAAGGAAACTTTTGAATGCCTCATGTCAATTTGTTCTTGTATTTGACCTCCAAGAGATGTAACATTGAATTTGATTTCAACC

Ace file of the UniGene sp_v1.1_unigene497

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin family protein / WD-40 repeat family protein; K12816 pre-mRNA-processing factor 17	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	94%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	94%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	94%
Blast2go	WD40-repeat-containing domain	IPR017986	-	94%
Blast2go	WD40 repeat, conserved site	IPR019775	-	94%
Blast2go	WD40 repeat, subgroup	IPR019781	-	94%
Blast2go	WD40 repeat 2	IPR019782	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HPP2

Fln msg: Overlapping hits, possible frame ERROR between 340 and 340, and overlapping frame ERROR between 1233 and 1221,

Fln protein: MDLLQNYQDDSEDSNPELRNHPPLEDATATSAPAGVENEISSSPDSSPLRLALPAKSCAPDVDETLMALGVPGSEKxxNHNKPIDPTQHSVTFNPSYDQLWAPLYGPAHPYAKDGIAQGMRNHKLGFVEDSAIEPFMFDEQYNTFHRYGYAADPSASLGSHIVGDLESLKRNDGASVYNLPKREHKKQKLEKKMIQKDENEEEEKEVGEEVDNPSTEEWLKKNRKSPWAGKKEGLQTELTEEQKKYAQEHAEKKGDREKGEKVEIVDKTTFHGKEERDYQGRSWIDPPKDAKATNDHCYIPKRWVHTWSGHTKGVSAIRFFPKYGHLLLSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFSNDGSxxxxxxxDRNIKLWDTETGKVISTFSTGKIPYVVKLHPDEDKQNVLLAGMSDKKIVQWDMNSGEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKTCKVFRTLKCHENVCIGCEWHPLEQSKVATCGWDGMIKYWD*

Protein Length: 605

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGTCAGTTCAAGGGGAGCGCTCTGTTAGAAGAAATCCTCTTGTAAATTGTTGCAAGAACGACAACACCGACTCCAGGACCA_-_ATGGATTTACTGCAGAATTACCAGGATGACAGTGAAGATTCGAACCCAGAACTTAGAAATCATCCACCGCTGGAAGACGCCACGGCAACTTCGGCGCCCGCAGGAGTCGAAAACGAGATCTCTTCTTCACCAGACTCCTCCCCTTTGCGCCTCGCATTGCCAGCAAAATCTTGCGCACCGGATGTGGACGAAACCCTAATGGCCCTCGGGGTTCCAGGCTCCGAGAAAxxxxxxAATCACAACAAGCCTATCGACCCTACGCAGCACAGCGTGACGTTCAATCCAAGCTATGATCAGCTCTGGGCTCCGCTTTACGGTCCTGCTCATCCTTACGCCAAGGATGGAATCGCTCAGGGCATGAGAAACCACAAGCTCGGTTTTGTGGAGGATTCGGCCATCGAACCCTTCATGTTCGACGAGCAGTACAATACTTTTCACAGGTATGGTTACGCTGCCGACCCTTCTGCTTCTTTGGGTAGTCATATTGTTGGTGATTTAGAGTCTTTGAAGAGAAACGATGGAGCATCTGTGTATAATTTACCTAAACGTGAGCATAAGAAGCAGAAACTCGAGAAAAAAATGATACAGAAGGACGAGAACGAGGAGGAGGAAAAAGAAGTTGGAGAGGAAGTTGACAATCCTTCCACGGAAGAGTGGCTGAAGAAGAATAGGAAAAGCCCTTGGGCTGGTAAGAAGGAGGGTTTGCAGACTGAATTGACTGAGGAGCAGAAGAAGTATGCTCAGGAACATGCTGAGAAGAAGGGTGACAGGGAGAAGGGTGAGAAGGTTGAGATTGTAGATAAGACTACTTTCCATGGCAAGGAGGAGAGGGACTACCAGGGGAGGTCTTGGATTGATCCTCCCAAGGATGCCAAGGCAACCAATGATCATTGTTATATTCCGAAGAGGTGGGTCCATACATGGAGTGGGCATACAAAGGGGGTTTCGGCGATCCGATTCTTCCCCAAGTATGGCCATCTGTTGTTATCTGCTGGCATGGATACGAAGGTGAAGATCTGGGATGTTTTTAACAGTGGGAAATGCATGAGGACTTACATGGGTCATTCGAAGGCGGTGCGTGACATATCATTCAGCAATGATGGTTCTAGxxxxxxxxxxxxxxxxxxTGATAGGAATATCAAATTGTGGGATACGGAGACAGGGAAGGTGATTTCGACATTCTCCACAGGGAAGATACCATATGTTGTGAAGCTCCACCCAGACGAGGATAAGCAGAATGTGCTACTGGCAGGTATGAGTGATAAGAAGATCGTGCAGTGGGACATGAATAGTGGTGAGATCACTCAAGAGTATGATCAGCATCTTGGTGCTGTGAATACCATTACTTTTGTAGATAATAATAGGAGGTTTGTGACATCGAGCGATGACAAGTCCCTGAGGGTTTGGGAATTCGGCATTCCTGTGGTCATTAAATACATCAGTGAGCCTCACATGCATTCAATGCCTTCGATTTCTCTTCATCCAAACACGAATTGGCTTGCTGCACAGAGTTTGGATAATCAAATTCTGATCTACAGTACAAGGGAGAGGTTCCAACTCAATAAGAAGAAGAGGTTTGCGGGGCATATTGCAGCAGGTTATGCTTGCCAAGTTAACTTTTCACCCGATGGGCGATTTGTTATGTCCGGAGATGGTGAGGGCAGATGTTGGTTCTGGGATTGGAAAACTTGTAAAGTCTTCAGAACTTTAAAATGCCATGAGAACGTTTGCATAGGCTGTGAGTGGCATCCTCTGGAACAGAGCAAGGTTGCTACATGTGGCTGGGACGGAATGATTAAATATTGGGATTAA___ATTCAGTACAATAAATGCAAGATCTCTAACTCAACTTGAGTATTTATGAAGGTGCCGTATCAAAAGATTGGTACTTCTTTATGGACACACAAGATCGTAAGCATGGCTGAATTGACTTGAGGAAAATGAAACGACCTTGTTAAATGTAATGATGTAGAGGCCTGATGTGGTACCTGGTTGTCTACCAGACTATACCCTCTGTCCTACCTTCCGAAGGAAACTTTTGAATGCCTCATGTCAATTTGTTCTTGTATTTGACCTCCAAGAGATGTAACATTGAATTTGATTTCAACC

Fln Alignment:

sp_v1.1_unigene497___ENEISSSPDSSPLRLALPAKSCAPDVDETLMALGVPxxxxxPIDPTQHSVTFNPSYDQLWAPLYGPAHPYAKDGIAQGMRNHKLGFVEDSAIEPFMFDEQYNTFHRYGYAADPSASLGSHIVGDLESLKRNDGASVYNLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTEEWLKKNRKSPWAGKKEGLQTELTEEQKKYAQEHAEKKGDREKG--EKVEIV-DKTTFHGKEERDYQGRSWIDPPKDAKATNDHCYIPKRWVHTWSGHTKGVSAIRFFPKYGHLLLSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFSNDGSRFxxxxYDRNIKLWDTETGKVISTFSTGKIPYVVKLHPDEDKQNVLLAGMSDKKIVQWDMNSGEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKTCKVFRTLKCHENVCIGCEWHPLEQSKVATCGWDGMIKYWD
F6HPP2_____________QNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIAxxxxxPIDPIQHVVPFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNNYVGDLEALEKNDGISVYNIPQHEQKKRKIEKKKESESEENEDVDVEEVQN--PATDTWLLKNKKSPWAGKKEGLQTELTEEQKKYAEEYAKKKGE-EKGAAEKGEFVTDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFxxxxYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
46		16	83		0.994512
50		16		83	0.994512
65		83		16	0.994512
108	28	71			1.0
115	85		14		0.993533
163	28			71	1.0
188		71		28	1.0
190		71	28		1.0
197	71	28			1.0
229		40		60	1.0
299		80		20	0.995493
306	20	60		20	0.99255
309	60		40		1.0
310	60	20	20		0.99255
311			20	80	0.995493
313			80	20	0.995493
315	20	80			0.995493
320	20		80		0.995493
345		75		25	0.996473
360		75		25	0.996473
459		66		33	1.0
575	14			85	0.993533
576		85		14	0.993533
579		85	14		0.993533
580			14	85	0.993533
634	77		22		0.999999
640		11		88	0.923564
661		25		75	1.0
696		16		83	0.994512
697	83		16		0.994512
910	80		20		0.995493
1040			33	66	0.997452
1331		66		33	1.0
1334	66		33		1.0
1355		33	66		1.0
1424	28		71		1.0
1587		20		80	0.995493
1616	16	83			0.994512
1619		83	16		0.994512
1620	83		16		0.994512
1683	37		62		1.0
1719	10			90	0.90298
1722		90	10		0.90298
1723		90	10		0.90298
1836		14	85		0.999981
1905	83		16		0.999991
1970			59	40	1.0
2004		15		85	1.0
2014		85	15		1.0
2046	86		13		0.999973
2066		18		81	0.999994
2123		66	33		1.0
2142	33		66		0.997452
2154	66		33		0.997452
2157	33	66			0.997452
2178		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain