SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene495

Length: 1357 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HNH endonuclease domain-containing protein	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	hnh endonuclease domain-containing protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HNH endonuclease	IPR002711	-	0.0	81%
Blast2go	HNH nuclease	IPR003615	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLU3

Fln msg:

Fln protein: MDSASPSEERAGNHKRARFFDEKTRNLCWQKADVVAGRHPERWRKDSAGNIVCRRFWHCDGCLCYEYDHIIPFSKGGETTIENCQILQSRVNRSKGNKDQVDKTVLEQYSCDLKFTDKELDVIEMAVYGNVIRPGLQCRCKSVAEMLGQMKSKSPQMACELPYKET*

Protein Length: 168

Fln nts: TCATGAACTCTCGATTTCCATTCTCGAAATTATAATTAGACAAGAGAATCCAAGTTTTCGCAAGCTTAACCAGGCCTAAAGAAAATTAATGAAGTTTTCCAAATCTTACAAATTGTAAAGTTGAATTATAACCAGCTGCACGCGTGAAGAATGCGGCATTTTTCCCACTCTTTTTAATCAGACATGCAGCGGGAGTGCTGAAAAGCAACCTTCTGGGTCGCATTTCTTCCTATTCAAGTCTCAAGCCTACTCTTGAGTTTAGGGGAGGCATAGGCATAGAGAGTTGAACATTACATTGGGTTTGTG_-_ATGGATTCTGCCTCGCCCTCGGAAGAGAGGGCAGGCAATCACAAAAGGGCTAGGTTCTTCGACGAGAAGACGAGAAATTTGTGCTGGCAGAAGGCAGATGTTGTTGCAGGTCGTCATCCAGAACGTTGGAGAAAGGACAGTGCCGGCAACATAGTCTGCAGAAGGTTTTGGCACTGTGACGGCTGTCTCTGCTACGAGTATGATCACATCATTCCCTTCTCCAAAGGTGGAGAGACGACAATTGAGAACTGCCAAATTTTGCAGTCAAGGGTCAATCGATCTAAAGGGAACAAGGATCAAGTCGATAAAACTGTTTTGGAACAGTATTCATGTGACCTTAAATTTACAGATAAAGAGCTGGATGTTATCGAGATGGCTGTCTATGGAAATGTGATACGACCAGGGCTTCAATGCCGGTGCAAATCTGTTGCTGAAATGCTTGGACAGATGAAGTCGAAAAGCCCTCAGATGGCATGCGAGTTGCCGTATAAAGAAACATAA___TAGATAGAGAAGACTGGCTGCCTGGTGCCATGTTGATGGTCACGTGCAGGTGAACAGAAGACAGGTTGCCATGAAATGAATTTGAAAATTGGGGAGTGGTGGGTTTATGATTTTTTTTCTGATGATTACAGGGAATTTAGCACGCAGTTGTGTGTCCCATTCTTTTGAGTCAATGATCATGGCCTTTGGCTCAGTATTATTATGCATGCTTCTTTTAAGAAATTAATAGTGATTTACAGTTCAGTTAATGATATTGGACTCGGCTTGTGGAAGTTAATTACAACAAAAAAGACTGTCAAACTCATTTCAGGTTGGATTTTCTGGTTTCACATGAAAGGTTTCTAGTAAAATTGTGCTTGCCTTGACCTTTTTGGATTCGAGCTATCTTACAAATTCAGGTAAGCACCGATGTTTCAGGTAATTAATTACCTTCTGAATTAAAAGTGGTGGTTGCATGGTAGAGCAAGATATACGCCATCTTTGATTAATAAACTGAAGTCGTGTTCTTGTATAAAAATTACTTTTATAATGCTTTAATGCTGTTTTATCT

Fln Alignment:

sp_v1.1_unigene495___MDSASPSEERAGNHKRARFFDEKTRNLCWQKADVVAGRHPERWRKDSAGNIVCRRFWHCDGCLCYEYDHIIPFSKGGETTIENCQILQSRVNRSKGNKDQVDKTVLEQYSCDLKFTDKELDVIEMAVYGNVIRPGLQCRCKSVAEMLGQMKSKSPQMACELPYKET
A9NLU3_____________MDSASPSEESARNQKRARFFDEKMRNLCWQKADVVPGRHPERWRKDGAGNIVCRRFWHCDGCLCYEYDHIIPFSKGGETTVENCQILQSRVNRSKGNKDQLDKTVLEQYSCDLKFTDKELDVIEMAVYGNVMRPGLQCRCKSVAEMLGQLKSKSPQMACELPYKET

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
227	25			75	0.996473
229		75	25		0.996473
230		75	25		0.996473
231			25	75	0.996473
237	80	20			0.995493
241			20	80	0.995493
242		80		20	0.995493
243	80		20		0.995493
249	80			20	0.995493
250		80	20		0.995493
251			20	80	0.995493
255		20	80		0.995493
258		20		80	0.995493
260		20		80	0.995493
787	10			90	0.90298
790		90	10		0.90298
791		90	10		0.90298
871			55	44	1.0
898	20		80		0.995493
929	83	16			0.994512
934		16		83	0.994512
938			83	16	0.994512
939		16	83		0.994512
940	16		83		0.994512
1191	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain