SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene493

Length: 2063 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene493
ATATTGTCATTTAGTCACCATATCGTCATTTCGTCGTCCCTTTGTTTCTCAGGCTGACACCTGGCATCGGGCATAGAGCGGGCATAAACCCTCTAACCACCCACACCTTTGTCTGCAGAGTTCTGAAAGCGAGCGGTCATATGTTGGAGGAATGTTTGAGATGCTATGCGGGGAATATGCCCTCCTTTTTTATATAAAGCGCTCGTCGTGCCTTCATGGAGATTCATGAAGGCGGTTCTGCGGCTAATTAATTTTTAGTTGGAGTTTGAGAAATTAGTGACGTTTTCTTCCGAAGCTTAAGCATTCATAAGCTATGGAGCATTGTGTTTTAGGAGCAAGATGCATATGGTTGTTTGAGAGTTATCGCAATGACTCTGTGAGAGGAGTGAGGGATTATGTTTCTCTGGTTTTTGGGTTGATCAGTGTTTTCAGCTGGGCTGTTGCTGAGATTCCACAGATTTTTTACCAACTTCAAGAATGGATCTACAGAGGGAGTCTCGCTTGCGTTTCTCATGACATGGGTTGCCGGGGATGTTTTCAATCTTATTGGGTGTTTGCTGGAGCCAGCAACTCTCCCAACACAGTTCTATACTGCACTGGTATATACAATTACCACAGTGGTCCTAGTTTGGCAAACTTTATATTATGACCACATCCGCAAGTGGTGGAAGACAAGGAAAGCGAAATCGTCTCCCGAGAAAAAGCAGCTCTCTGGAAGCAAGGATTGGTCAAACCACACAAAGCCCGTGAACGTACCAGAGAATAAAGACTATTCTGCGGAGCTAGGCAAGAAAAATGCCGCAGATAATTTCAAGAAATTATCTAATGGAACTCCTGCATCTAGTTTACCTATTCCCACTTTTTCACCGGCTCATGACAGATCGGTTGGAAGAAACCTATACTACATGTCTGCGAGATCTTTGGCGAGCAGTCATACCCCTACTCCGGGCTCATATCTCGCTCCATCATCCCGTGGGTCTGGTCGGAGTGGTCCGAGTTATATATTAAACCAGTCCTCTGTGGACGAAGAAGGATTGCTAGCAAATATTGATCCTAGTCCTAAGAACTCAAAAACTATATTACGCAGTGTAGCAGCAACAGTATTATTTGTTGGTGGGCTCAATTATTTCCATTTACAAGCCATTACCGCCTTTGATTATACTAAAACAGATCCAAAAGCAGCAGTAGCAGTCGTCCTAACAGGGAGGAAAATTTTGCAGGAAGCGAGCACAATTGCCTTCCGGGACTCAACTATACATGAACAGTCCGTCAGTCCACTAGGAACGTGGTTGGGATGGATTATGGCTGCCATCTATATGGGTGGAAGGTTTCCACAAATCTGGAAAAATGTACAGCGGGGAACTGTTGAGGGTCTAAATCCATTGATGTTCCTGTTTGCGCTAATTGGAAATGCAGCCTATGTAGCCAGCATTCTGGTAAAGACATTGGAATGGAAAGAATTGAAGCCAAATATGCCATGGCTGGTGGATGCTGCAGCCTGTGTGCTTTTAGATATTTTTATTCTCGCTCAGTTCATCTATTATAGGACGAGAAAAGATGATCAGCAAGAAGATAACATTAATGGAAATTACGAGGCAATAAAGTCATAGCAGTACAGTACATGGAACACATCTTAGGATCTCAGTGGATGGCTACTGTGCTGTATTCAACATTCAGTCCCAACTTTAGATGATGTTTGGACATGATAGTAAGGTAAGCCGATGGTTTAACTACTGATTATTATCATCTCAATTTGCATTTGAACCAGAGTATAACTTTATTCTACAGTTCCTCTCTCTTGTCCTCGTATAAAGAGCTATGTTCAGATATGTTCCAAAGTAATCAATCCTCTTCAAACAAAGTTTGTAATATTCTGTGGACAGCTTTTCTCCACTGCCATCATTACAGCTTTTCTCCACTATCATCCTTTTCCATGTGGAAAAAGTTAGAATCTATTTGGAAAAAATGAATGTTTTGCATAGTAGTAATTATTTTTTAGGAGGAAACAATGTATACAAATAAATTTTTTTAATGTAATTAATTATTTATGCAGTTGTCTATAA

Ace file of the UniGene sp_v1.1_unigene493

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PQ-loop repeat family protein / transmembrane family protein	-	-	41%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	44%
Blast2go	pq-loop repeat family protein	-	-	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cystinosin/ERS1p repeat	IPR006603	-	0.0	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9IHG0

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: SVFSAGLLLRFHRFFTNFKNGSTEGVSLAFLMTWVAGDVFNLIGCLLEPATLPTQFYTALVYTITTVVLVWQTLYYDHIRKWWKTRKAKSSPEKKQLSGSKDWSNHTKPVNVPENKDYSAELGKKNAADNFKKLSNGTPASSLPIPTFSPAHDRSVGRNLYYMSARSLASSHTPTPGSYLAPSSRGSGRSGPSYILNQSSVDEEGLLANIDPSPKNSKTILRSVAATVLFVGGLNYFHLQAITAFDYTKTDPKAAVAVVLTGRKILQEASTIAFRDSTIHEQSVSPLGTWLGWIMAAIYMGGRFPQIWKNVQRGTVEGLNPLMFLFALIGNAAYVASILVKTLEWKELKPNMPWLVDAAACVLLDIFILAQFIYYRTRKDDQQEDNINGNYEAIKS*

Protein Length: 398

Fln nts: ATATTGTCATTTAGTCACCATATCGTCATTTCGTCGTCCCTTTGTTTCTCAGGCTGACACCTGGCATCGGGCATAGAGCGGGCATAAACCCTCTAACCACCCACACCTTTGTCTGCAGAGTTCTGAAAGCGAGCGGTCATATGTTGGAGGAATGTTTGAGATGCTATGCGGGGAATATGCCCTCCTTTTTTATATAAAGCGCTCGTCGTGCCTTCATGGAGATTCATGAAGGCGGTTCTGCGGCTAATTAATTTTTAGTTGGAGTTTGAGAAATTAGTGACGTTTTCTTCCGAAGCTTAAGCATTCATAAGCTATGGAGCATTGTGTTTTAGGAGCAAGATGCATATGGTTGTTTGAGAGTTATCGCAATGACTCTGTGAGAGGAGTGAGGGATTATGTTTCTCTGGTTTTTGGGTTGATCAGTGTTTTCAGCTGGGCTGTTGCTGAGATTCCACAGATTTTTTACCAACTTCAAGAATGGATCTACAGAGGGAGTCTCGCTTGCGTTTCTCATGACATGGGTTGCCGGGGATGTTTTCAATCTTATTGGGTGTTTGCTGGAGCCAGCAACTCTCCCAACACAGTTCTATACTGCACTGGTATATACAATTACCACAGTGGTCCTAGTTTGGCAAACTTTATATTATGACCACATCCGCAAGTGGTGGAAGACAAGGAAAGCGAAATCGTCTCCCGAGAAAAAGCAGCTCTCTGGAAGCAAGGATTGGTCAAACCACACAAAGCCCGTGAACGTACCAGAGAATAAAGACTATTCTGCGGAGCTAGGCAAGAAAAATGCCGCAGATAATTTCAAGAAATTATCTAATGGAACTCCTGCATCTAGTTTACCTATTCCCACTTTTTCACCGGCTCATGACAGATCGGTTGGAAGAAACCTATACTACATGTCTGCGAGATCTTTGGCGAGCAGTCATACCCCTACTCCGGGCTCATATCTCGCTCCATCATCCCGTGGGTCTGGTCGGAGTGGTCCGAGTTATATATTAAACCAGTCCTCTGTGGACGAAGAAGGATTGCTAGCAAATATTGATCCTAGTCCTAAGAACTCAAAAACTATATTACGCAGTGTAGCAGCAACAGTATTATTTGTTGGTGGGCTCAATTATTTCCATTTACAAGCCATTACCGCCTTTGATTATACTAAAACAGATCCAAAAGCAGCAGTAGCAGTCGTCCTAACAGGGAGGAAAATTTTGCAGGAAGCGAGCACAATTGCCTTCCGGGACTCAACTATACATGAACAGTCCGTCAGTCCACTAGGAACGTGGTTGGGATGGATTATGGCTGCCATCTATATGGGTGGAAGGTTTCCACAAATCTGGAAAAATGTACAGCGGGGAACTGTTGAGGGTCTAAATCCATTGATGTTCCTGTTTGCGCTAATTGGAAATGCAGCCTATGTAGCCAGCATTCTGGTAAAGACATTGGAATGGAAAGAATTGAAGCCAAATATGCCATGGCTGGTGGATGCTGCAGCCTGTGTGCTTTTAGATATTTTTATTCTCGCTCAGTTCATCTATTATAGGACGAGAAAAGATGATCAGCAAGAAGATAACATTAATGGAAATTACGAGGCAATAAAGTCATAG___CAGTACAGTACATGGAACACATCTTAGGATCTCAGTGGATGGCTACTGTGCTGTATTCAACATTCAGTCCCAACTTTAGATGATGTTTGGACATGATAGTAAGGTAAGCCGATGGTTTAACTACTGATTATTATCATCTCAATTTGCATTTGAACCAGAGTATAACTTTATTCTACAGTTCCTCTCTCTTGTCCTCGTATAAAGAGCTATGTTCAGATATGTTCCAAAGTAATCAATCCTCTTCAAACAAAGTTTGTAATATTCTGTGGACAGCTTTTCTCCACTGCCATCATTACAGCTTTTCTCCACTATCATCCTTTTCCATGTGGAAAAAGTTAGAATCTATTTGGAAAAAATGAATGTTTTGCATAGTAGTAATTATTTTTTAGGAGGAAACAATGTATACAAATAAATTTTTTTAATGTAATTAATTATTTATGCAGTTGTCTATAA

Fln Alignment:

sp_v1.1_unigene493___SVFSAGLLLRFHRFFTNFKNGSTEGVSLAFLMTWVAGDVFNLIGCLLEPATLPTQFYTALVYTITTVVLVWQTLYYDHI-RKWWKTRKAKSSPEKKQLSGSKDWSNHTKPVNVPENKDYSAELGKKNAADNFKKLSNGTPASSLPIPTFSPAHDRSVGRNLYYMSARSLASSHTPTPGSYLAXXXXXXXXXXXXYILNQSSVDEEGLL---ANIDPSPK-NSKTILRSVAATVLFVGGLNYFHLQAITAFDYTKTDPKAAVAVVLTGRKILQEASTIAFRDSTIHEQSVSPLGTWLGWIMAAIYMGGRFPQIWKNVQRGTVEGLNPLMFLFALIGNAAYVASILVKTLEWKELKPNMPWLVDAAACVLLDIFILAQFIYYRTRKDDQQEDNI
B9IHG0_____________SVLSWGVA-EIPQIITNYKEKSTEGLSLAFLLTWIIGDLFNVFGCMLEPATLPTQYYMAVLYTITTSVLTAQTIYYGHIYHRLKRNRRCIKTEEAGRIRQG--------------NSDAGAQVNNAGKQRNETASPDGTNGSSSPIPFPTLFQKSSPGRELYYMSARSLSSSHTPAVGSFLAQRVASPSFSMRNSI-------EDPLLGGDATTQSAPNLNTKTML-CVVSVVTLLGTLN-LHQSANNRLARA-FENKHQGFVIQVGRKILQASSRMSHENYS----EGSGIGTFLGWSMAAIYMGGRLPQIFLNIKRGNVEGLNPLMFVFALIGNITYVASILVDSVAWSKISANLPWLVDAGGCVLLDTCILLQFAYFRHRRRQLLENKL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
332			66	33	0.997452
334	66		33		0.997452
336		66	33		0.997452
674	64	35			1.0
691		61		38	1.0
771		33		66	1.0
892	14		85		0.993533
907			12	87	0.992554
910		87	12		0.992554
914		12	87		0.992554
920			12	87	0.992554
921		12		87	0.992554
922		12		87	0.992554
923			87	12	0.992554
924		12	87		0.992554
926		12	87		0.992554
927	87			12	0.992554
947	14		85		0.993533
967		85		14	0.993533
1095	10		90		0.90298
1219	87	12			0.992554
1720		90		10	0.90298
1758	90	10			0.90298
1765		90		10	0.90298
1825	87	12			0.992554
1826	12		87		0.992554
1828	12			87	0.992554
1829	87		12		0.992554
1831	12		87		0.992554
1832	11			88	0.923564
1849		50		50	1.0
1886		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain