SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene491

Length: 1245 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene491 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F16B3.3 protein n=2 Tax=Arabidopsis thaliana RepID=Q9M8A0_ARATH	-	-	5.0e-18	31%
FL-Next	sp=FHA domain-containing protein At4g14490; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	protein	-	-	7.20416e-20	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Forkhead-associated (FHA) domain	IPR000253	-	7.20416e-20	55%
Blast2go	SMAD/FHA domain	IPR008984	-	7.20416e-20	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O23305

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 109 aas, your sequence is shorter than subject: 220 - 386

Fln protein: MDRTSVLSLHLEKGPRQGEVLDCRKRAKVTIGRVAKPNTFAIKEDGISQKHLCIELKDNKWTLADLGSSNGTFLNDDRLLPNKPCPLKNGDAIKIGEETLIRVKIESQASPEKKTLRPQANRKRGEAATSKKHKTVVQNPAPPQSVVGSTGKSAERVNSGAECSRKGSEDMTLEEWFDQMEQWLPKHLTEVSENIIGQMRERSEQFDEYILQKNPKNGQ*

Protein Length: 221

Fln nts: ATGGGGAAACGGAATGGGCGTCAATTCAAAATTTCAATAACTACCAGTGCTTCGTTGCTGTATGATGACAGGACACAGGAAGAAGCCACAAGATCCGTTCATGGCCGCCTCTTTCAGGCTCTATGATAAGGATGTTGCCCATCGCACTCCGAGCTAACCAGTCTTCTTTTCCGAATGTAGCCAAACCTCTTTTAATTACTTTATTTATATATAAAGAAACCATCCAAATTTTGGCCAGAGTGGGATCCAAACACCTGGGATCTGTGGCTTAAAGCATCACATTGTATGAAGCCGAACCCACAAGCCAAAATTCTTCTCTTCCTCATAAAATCTCATATCCACCGTTTAAAAAGGCAGCGCATTATATGAAGCCGAAGCCGGCAGTTGGGTTATTATTGGTGAAAA_-_ATGGACAGAACCAGTGTATTATCGCTGCATTTGGAGAAGGGCCCCCGCCAAGGCGAAGTCTTAGACTGCCGAAAACGAGCGAAAGTCACCATTGGTAGAGTCGCGAAACCTAACACTTTCGCGATCAAGGAAGACGGTATTTCACAGAAGCATTTGTGCATAGAATTGAAAGACAACAAATGGACTCTCGCAGACCTCGGCTCCTCAAACGGCACGTTCTTGAATGATGACCGGCTGCTCCCGAACAAGCCCTGCCCTCTAAAGAACGGCGATGCTATAAAAATCGGAGAAGAAACCCTCATCAGAGTCAAGATCGAATCTCAGGCCTCCCCAGAAAAGAAAACCCTAAGGCCTCAGGCAAACCGTAAAAGGGGGGAAGCGGCCACCTCTAAGAAACATAAAACTGTGGTTCAAAACCCTGCACCGCCTCAGTCCGTGGTTGGCTCCACCGGCAAATCTGCCGAAAGGGTTAATTCAGGAGCGGAATGTAGTCGCAAGGGTTCGGAGGATATGACCCTAGAAGAATGGTTTGATCAGATGGAACAGTGGTTACCTAAACATTTGACTGAAGTTTCGGAGAATATTATCGGGCAGATGCGAGAGCGGTCGGAGCAGTTCGATGAATACATCTTGCAGAAGAACCCAAAGAATGGGCAATGAGTTTTAGGATACGGTTTTGGGCATTCCACAGAGTATTCAATTTGTTTTTCCAGCGAGAGTGAAGCAGTAACTATGGCAATCTGAAGGAGGGTTCTCTATGACTAGTCTTATTTATGAGCTTTTCAGGTCAGCTTTAGCACCCTGTATATTGGTTATTATTGTAGTCTTGAGAAATCTCAA

Fln Alignment:

sp_v1.1_unigene491___TSVLSLHLEKGPRQGEVLDCRKRAKVTIGRVAKPNTFAIKEDGISQKHLCIELKDNKWTLADLGSSNGTFLNDDRLLPNKPCPLKNGDAIKIGEETLIRVKIESQASPEKKTLRPQANRKRGEA
O23305_____________TPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVIDDFQEKKLTR--NNRRQANA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
359	15		84		0.999986
364		23		76	1.0
373		76	15	7	0.999983
375			15	84	0.999986
379	16		83		0.999991
382	83	16			0.999991
383	16		83		0.999991
385			16	83	0.999991
386			16	83	0.999991
388		16	83		0.999991
389	16	83			0.999991
392	16		83		0.999991
393		16		83	0.999991
412	90	10			0.90298
413		10	90		0.90298
414		10	90		0.90298
415	10	60		30	1.0
416			90	10	0.90298
436	88			11	0.923564
485		20		80	0.995493
611	25			75	0.996473
614	25			75	0.996473
615	25	75			0.996473
617	25			75	0.996473
618	25			75	0.996473
619	25	75			0.996473
680	83			16	0.994512
686	83	16			0.994512
687	83			16	0.994512
688	83	16			0.994512
691	16	83			0.994512
695	16			83	0.994512
696	16		83		0.994512
773		16		33	1.0
854	75	25			0.996473
855	75	25			0.996473
856		25		75	0.996473
858	75			25	0.996473
909	33		66		0.997452
913		33		66	0.997452
954		66		33	0.997452
1107			33	66	0.997452
1160		33		66	0.997452
1179		33	66		0.997452
1180		33		66	0.997452
1181		66	33		0.997452
1182	66	33			0.997452
1183		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain