SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene476

Length: 2621 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene476
ATGGGGGCAGTTGTACAGACGAAGCAGAAAAAAAGGGAGGGTTTGCAGCTTTTGATGAAGAAGAAGCAACATTGTCGTATTTTGGAATTCTCATTATTGGAAAAATCGTGGTGTGGGCATTTTCGATCCTTGAGCTGCATCTGCTACGCTTTCTGCCCATCTAAATTATTCCTTCATCGATGATGCTCTGCTGCCATTTTCATGCTTCCAGCTGCTTAAAGGAGGTCGCCGGTTCTAGTTTCGGGGCGGCCAATGATTCAGGGTTTTGAGAAAAATATGCAGCGATTTTAGGCACTTTGATTTTCAATCTCTGGACTATTTTTAACGGGAGGCCGCCGGTTCGAGTCTTCAGGCGGCCAATGATTTGGGGTTTGACCCCGTAAAGCGAGCGTTTCTTGCAGAATTCTTTGGGAAAGAAATTAATGTGGGGTGAAACAAAAGGCTTCAGAAGAGATGTATGCAGCTCCACCTCCTCAGATTCCGAACATGGGGGGGTCTAATATGGACCAAACTGGCAGCGAGAAGAGAGTATTTCAAGCTTGGAAAGGAAGCAATAAATTTTTCTTTGCTGGGAGGTTTATATTTGGGCCAGATGTGAGGTCACTGGTTTTGACGTTTGTTCTTATCCTCGTTCCAGCAACAATATTCTGTGTATTTGTTGCAAGAAAACTTTTGGACAAGTTTTCACATCATGCTGGAGTATCCATAATGGTCATTGCAGTGGTCTTCACAATATATGTTCTGGTTCTTCTTCTTCTCACATCCGGAAGAGATCCTGGAATACTCCCTCGAAATGCACACCCTCCTGAGCCTGACGAAGGTTATGATGTTGCCAGTTTGACACCAGAGTCAATAGGTGGGCAGACTCCACATCCACGATTACCTCGTACAAAAGATGTGTTTGTGAATGGTATTTCAGTGAAGATAAAGTATTGTGATACCTGTATGTTGTATCGTCCACCACGATGTTCCCACTGCTCTATATGCAATAATTGTGTGGAGCGTTTTGATCATCATTGCCCATGGGTAGGGCAGTGCATTGGGCTGCGCAACTACCGTTTCTTCTTTATGTTTGTTTTTTCAACAACGCTGTTGTGCGTTTATGTATTCTCCTTTTGTTGGGTATATATCAAGAAAATTATGGTAGCAGATGATGTTACAGTCTGGAAAGCTATGTCAAAAACACCTGCGTCAATTGTGCTCATACTATACACATTCTTTTCAGTTTGGTTTGTTGGTGGACTTACGGTATTTCATCTCTATCTGATCAGTACAAATCAGACTACATATGAGAATTTCAGATATCGGTATGATAGAAGAGCAAATCCTTACAACAAAGGAGTAATACAGAATTTCAAAGAAATATTTTTTACAAGTGTTCCACCGTCAAAGAATAATTTTCGAGCCAAGTTACAGAATGATTCTACACTGCAAGATACTTCTGCTGCTCCTTCAGGGGGGAACTTTCTCAGTCCCAACATGGGCAAAGGAGGAATTGACCTTGAAATAGGTAATAAGCCTTCATGGCCATCCGTTGGTGCTGAAGTATTGGCAGATTTTGAAGCACATGAAAGCAATGGTGGATTAGAAAACAAAGATGGTTATGAGGACTCTTTTGCTCATTCAAGCCGTACACTTCCCGTGGAAAGTGCAGAGGGAAGAGGTGGAATACATCCAAGGCGTTCAAGTTGGGGCCGTAAGAGTGGGAGTTGGGAAATAACACCAGATATTCTTGCCTTGGCTGCTGGAGTTAGTGAAGCAAATCGAGTTAGTGGAGACATCACTCCTCCAGGAAACCGATAATTTCTGCATCATATTTCAAGCAACCAAATACATGCTCTTGCAAAGGGTGTCATTCGCCAGTCAACAAAAAATCGATCAACAATGTTCAGGCAACATGGTCAGTTGTTTCAGGAATAATTTTCAAGATTGTGAATTTGTATTTTAGAATGCAAATTTAAGAAATTGGCTGACTACATCAGAAGAATATCAATACGGCTTACATTCTTGTAAGTAGGATATCGGGAATTTACAAAATGACCTTTCATTTAGGTCGTGATGTGCAAGTCAAGGACTTAAATTGGACTGCTGCATGTATGACCTTTTTCTGGAGTTTTCTTATTCACCCAATTTTCATTTAAAGATAAACTCTGCGTTCTTGTAGATTTACAGATTTTGTGGTTGGCATGTATAGATAAAAAATTAAAATACAAAAAGGGTTGGAATTCAGCTATGGTTCTGGTCTGTCCAGTGGATTTGTTTCATTGGATATAAAAACACTGTTTCCAAGGAATAAATCTTTTGTGCACCAGGTTGTATTGTCTCTTGTGTCCCATGTGAAATTCCTCGGCATTCCAGACTGCTGCTATAGTTGTGAGACTATTACATACTACGAAGTGCCATCAAAAGCTGATGTAGGTGTTTGCTAGTTACATGCAGCAAACACTAATCTAGAGCCATAGCAAACTTCTGGCTCATCAATTGAGTATTGAGATTATATTTAACTATATGCTGGTAGATTTTTGTCTAAAGAATTTATTGAATATTTTGATCAAATATTTGTCTGTTGAAAACTGGCAGTTTAGCGCCTTTATTAATTAGCTTTTGGACTTTAATTATTG

Ace file of the UniGene sp_v1.1_unigene476

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein, putative (EC:1.3.1.74)	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY1

Fln msg:

Fln protein: MYAAPPPQIPNMGGSNMDQTGSEKRVFQAWKGSNKFFFAGRFIFGPDVRSLVLTFVLILVPATIFCVFVARKLLDKFSHHAGVSIMVIAVVFTIYVLVLLLLTSGRDPGILPRNAHPPEPDEGYDVASLTPESIGGQTPHPRLPRTKDVFVNGISVKIKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCVYVFSFCWVYIKKIMVADDVTVWKAMSKTPASIVLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIQNFKEIFFTSVPPSKNNFRAKLQNDSTLQDTSAAPSGGNFLSPNMGKGGIDLEIGNKPSWPSVGAEVLADFEAHESNGGLENKDGYEDSFAHSSRTLPVESAEGRGGIHPRRSSWGRKSGSWEITPDILALAAGVSEANRVSGDITPPGNR*

Protein Length: 451

Fln nts: ATGGGGGCAGTTGTACAGACGAAGCAGAAAAAAAGGGAGGGTTTGCAGCTTTTGATGAAGAAGAAGCAACATTGTCGTATTTTGGAATTCTCATTATTGGAAAAATCGTGGTGTGGGCATTTTCGATCCTTGAGCTGCATCTGCTACGCTTTCTGCCCATCTAAATTATTCCTTCATCGATGATGCTCTGCTGCCATTTTCATGCTTCCAGCTGCTTAAAGGAGGTCGCCGGTTCTAGTTTCGGGGCGGCCAATGATTCAGGGTTTTGAGAAAAATATGCAGCGATTTTAGGCACTTTGATTTTCAATCTCTGGACTATTTTTAACGGGAGGCCGCCGGTTCGAGTCTTCAGGCGGCCAATGATTTGGGGTTTGACCCCGTAAAGCGAGCGTTTCTTGCAGAATTCTTTGGGAAAGAAATTAATGTGGGGTGAAACAAAAGGCTTCAGAAGAG_-_ATGTATGCAGCTCCACCTCCTCAGATTCCGAACATGGGGGGGTCTAATATGGACCAAACTGGCAGCGAGAAGAGAGTATTTCAAGCTTGGAAAGGAAGCAATAAATTTTTCTTTGCTGGGAGGTTTATATTTGGGCCAGATGTGAGGTCACTGGTTTTGACGTTTGTTCTTATCCTCGTTCCAGCAACAATATTCTGTGTATTTGTTGCAAGAAAACTTTTGGACAAGTTTTCACATCATGCTGGAGTATCCATAATGGTCATTGCAGTGGTCTTCACAATATATGTTCTGGTTCTTCTTCTTCTCACATCCGGAAGAGATCCTGGAATACTCCCTCGAAATGCACACCCTCCTGAGCCTGACGAAGGTTATGATGTTGCCAGTTTGACACCAGAGTCAATAGGTGGGCAGACTCCACATCCACGATTACCTCGTACAAAAGATGTGTTTGTGAATGGTATTTCAGTGAAGATAAAGTATTGTGATACCTGTATGTTGTATCGTCCACCACGATGTTCCCACTGCTCTATATGCAATAATTGTGTGGAGCGTTTTGATCATCATTGCCCATGGGTAGGGCAGTGCATTGGGCTGCGCAACTACCGTTTCTTCTTTATGTTTGTTTTTTCAACAACGCTGTTGTGCGTTTATGTATTCTCCTTTTGTTGGGTATATATCAAGAAAATTATGGTAGCAGATGATGTTACAGTCTGGAAAGCTATGTCAAAAACACCTGCGTCAATTGTGCTCATACTATACACATTCTTTTCAGTTTGGTTTGTTGGTGGACTTACGGTATTTCATCTCTATCTGATCAGTACAAATCAGACTACATATGAGAATTTCAGATATCGGTATGATAGAAGAGCAAATCCTTACAACAAAGGAGTAATACAGAATTTCAAAGAAATATTTTTTACAAGTGTTCCACCGTCAAAGAATAATTTTCGAGCCAAGTTACAGAATGATTCTACACTGCAAGATACTTCTGCTGCTCCTTCAGGGGGGAACTTTCTCAGTCCCAACATGGGCAAAGGAGGAATTGACCTTGAAATAGGTAATAAGCCTTCATGGCCATCCGTTGGTGCTGAAGTATTGGCAGATTTTGAAGCACATGAAAGCAATGGTGGATTAGAAAACAAAGATGGTTATGAGGACTCTTTTGCTCATTCAAGCCGTACACTTCCCGTGGAAAGTGCAGAGGGAAGAGGTGGAATACATCCAAGGCGTTCAAGTTGGGGCCGTAAGAGTGGGAGTTGGGAAATAACACCAGATATTCTTGCCTTGGCTGCTGGAGTTAGTGAAGCAAATCGAGTTAGTGGAGACATCACTCCTCCAGGAAACCGATAA___TTTCTGCATCATATTTCAAGCAACCAAATACATGCTCTTGCAAAGGGTGTCATTCGCCAGTCAACAAAAAATCGATCAACAATGTTCAGGCAACATGGTCAGTTGTTTCAGGAATAATTTTCAAGATTGTGAATTTGTATTTTAGAATGCAAATTTAAGAAATTGGCTGACTACATCAGAAGAATATCAATACGGCTTACATTCTTGTAAGTAGGATATCGGGAATTTACAAAATGACCTTTCATTTAGGTCGTGATGTGCAAGTCAAGGACTTAAATTGGACTGCTGCATGTATGACCTTTTTCTGGAGTTTTCTTATTCACCCAATTTTCATTTAAAGATAAACTCTGCGTTCTTGTAGATTTACAGATTTTGTGGTTGGCATGTATAGATAAAAAATTAAAATACAAAAAGGGTTGGAATTCAGCTATGGTTCTGGTCTGTCCAGTGGATTTGTTTCATTGGATATAAAAACACTGTTTCCAAGGAATAAATCTTTTGTGCACCAGGTTGTATTGTCTCTTGTGTCCCATGTGAAATTCCTCGGCATTCCAGACTGCTGCTATAGTTGTGAGACTATTACATACTACGAAGTGCCATCAAAAGCTGATGTAGGTGTTTGCTAGTTACATGCAGCAAACACTAATCTAGAGCCATAGCAAACTTCTGGCTCATCAATTGAGTATTGAGATTATATTTAACTATATGCTGGTAGATTTTTGTCTAAAGAATTTATTGAATATTTTGATCAAATATTTGTCTGTTGAAAACTGGCAGTTTAGCGCCTTTATTAATTAGCTTTTGGACTTTAATTATTG

Fln Alignment:

sp_v1.1_unigene476___MYAAPPPQIPNMGGSNMDQTGSEKRVFQAWKGSNKFFFAGRFIFGPDVRSLVLTFVLILVPATIFCVFVARKLLDKFSHHAGVSIMVIAVVFTIYVLVLLLLTSGRDPGILPRNAHPPEPDEGYDVASLTPESIGGQTPHPRLPRTKDVFVNGISVKIKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCVYVFSFCWVYIKKIMVADDVTVWKAMSKTPASIVLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIQNFKEIFFTSVPPSKNNFRAKLQNDSTLQDTSAAPSGGNFLSPNMGKGGIDLEIGNKPSWPSVGAEVLADFEAHESNGGLENKDGYEDSFAHS-SRTLPVESAEGRGGIHPXXXXXXXXXXXXEITPDILALAAGVSEANRVSGDITPPGNR
A9NWY1_____________MYAAPPPQIPDIGGSNMDQTASEKRVYQSWKGSNKFFFAGRFIFGPDVRSLVLTFVLILAPATIFCVFVARKLLDKFSHHAGVSIMVIAVVFTIYVLVLLLLTSGRDPGIIPRNAHPPEPEEGYDVASLTPESIGGQTPHPRLPRTKDVFVNGISVKIKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVFSFCWVYIKKIMVADDVTVWKAMSKTPASIVLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIHNFKEIFFSSIPPSKNSFRAKLQHDSTLQDTSADP-GGNFLSPNMGKGGIDLEIGNKPSWPTVGAEALADFDEHESNGGLENKDGYEDSFAHALSRTLPVESAEGRGGIHPRRSSWGRKSGSWEITPDILALAAGVNEANRVSGDITPPGNR

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
217	33			66	0.997452
219	66		33		0.997452
220	66		33		0.997452
221	66		33		0.997452
504	90		10		0.90298
596		10		90	0.90298
599		10	90		0.90298
600	90		10		0.90298
601			90	10	0.90298
603	10			90	0.90298
605	90	10			0.90298
606		90		10	0.90298
610		10		90	0.90298
612			10	90	0.90298
614		10	90		0.90298
617		10	90		0.90298
618	10			90	0.90298
1221		10		90	0.90298
1282	84	15			0.999986
1284	84			15	0.999986
1289	83	16			0.999991
1291	83			16	0.999991
1292			16	83	0.999991
1294	83			16	0.999991
1296	81	18			0.999994
1298		18		81	0.999994
1300		18		81	0.999994
1301	18	81			0.999994
1375		90	10		0.90298
1376	90		10		0.90298
1377	90		10		0.90298
1397		10		90	0.90298
1409	20	80			0.999996
1805	16		83		0.994512
1872	75		12		0.975346
1982		90	10		0.90298
1983	90		10		0.90298
2022		11		88	0.923564
2023	88		11		0.923564
2027			88	11	0.923564
2030	88	11			0.923564
2031		11		88	0.923564
2035		88	11		0.923564
2036	88		11		0.923564
2037	88	11			0.923564
2038	88			11	0.923564
2039	88		11		0.923564
2041		11	88		0.923564
2117		11		88	0.923564
2147		14		85	0.993533
2151	14	85			0.993533
2152	14			85	0.993533
2204	80			20	0.995493
2207	80			20	0.995493
2234		11		88	0.923564
2503			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
746	758	TTC TTC TTC TTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain