SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene474

Length: 1664 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene474 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA double-strand break repair rad50 ATPase, putative n=1 Tax=Ricinus communis RepID=B9RJ40_RICCO	-	-	8.0e-30	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	dna double-strand break repair rad50	-	-	1.47848e-29	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.47848e-29	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF869, plant	IPR008587	-	1.47848e-29	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX7

Fln msg: your sequence is shorter than subject: 438 - 528

Fln protein: GQESNNSLQFPLPNGNFRIIRKLNSIQVEKTALESELKTHVHRYADLEQAFMQLKTQKDSLESILAKTREKLEHTQGQLTESEQMVANLQVQLASAQESKRSLKYELGTMASHKSDIDKELVRLETKNTNLETALAATKEKLEQMQDQLTESEEMVKNLEEQLASAQESKQLSEYELGAMALRKSDIESQLKDRENEMKKLCEKVDALESELQAERMRCQDAMSKYKALEEQLQRKERDFEYSKHAILEEDIRKRQEKDIAAAAGKLAECQETILVLSKQLKALACPVDSMEFPYEAEKRAERDQRYELDAPWSPRSQSASWASEPENISTANGRGRASEWTSESGLVAPDLYKVNVPDSPIVDYLDGRLTMHTYSDTEESSPAGSPVKSTQQRNKFTCFSSGSEFPKSVKTYGGESPTSSSSSSSLASTFFSKSRE*

Protein Length: 439

Fln nts: GGGACAAGAAAGTAATAATAGCCTTCAATTTCCCTTGCCAAATGGAAATTTTCGCATAATTCGAAAGCTTAATAGCATTCAAGTTGAAAAAACAGCATTGGAATCTGAGTTGAAGACCCATGTACACAGATATGCAGATTTAGAGCAGGCGTTTATGCAATTGAAGACCCAGAAAGATAGTCTAGAGAGTATCCTAGCTAAAACCAGAGAGAAACTTGAGCACACGCAAGGCCAACTAACTGAGTCTGAACAAATGGTGGCAAACCTGCAAGTGCAGCTTGCTTCTGCACAGGAATCAAAGCGGTCATTAAAGTATGAATTAGGAACTATGGCTTCACATAAATCAGATATAGACAAGGAGCTTGTGCGATTGGAGACCAAGAATACTAATCTAGAAACTGCACTGGCTGCAACCAAAGAGAAACTTGAACAGATGCAAGACCAACTTACTGAGTCTGAAGAAATGGTGAAAAACCTGGAAGAGCAGCTTGCTTCTGCACAGGAATCAAAGCAGTTATCAGAGTATGAATTAGGAGCTATGGCTTTACGTAAATCAGATATTGAATCTCAACTTAAGGATCGTGAAAATGAGATGAAAAAATTGTGTGAAAAAGTGGATGCTTTAGAGTCAGAGCTTCAAGCAGAACGAATGCGCTGCCAAGATGCCATGTCCAAGTACAAGGCTTTAGAGGAGCAGTTACAAAGAAAGGAACGTGATTTTGAATATTCCAAACATGCAATTCTGGAGGAGGATATAAGGAAGAGACAGGAAAAGGACATAGCTGCGGCTGCAGGGAAGCTTGCAGAGTGCCAGGAAACCATACTTGTTCTTAGTAAGCAGTTGAAGGCCCTTGCTTGCCCAGTGGACTCCATGGAATTTCCATACGAGGCAGAAAAGAGAGCTGAAAGGGACCAAAGATATGAACTGGATGCTCCTTGGAGTCCTCGTAGCCAAAGTGCTTCATGGGCATCAGAACCTGAGAATATCAGCACAGCAAATGGCAGAGGACGTGCTAGTGAGTGGACTAGTGAATCTGGCCTTGTTGCTCCTGATCTATATAAAGTGAACGTACCAGATTCACCAATTGTAGATTATTTGGATGGACGTTTAACAATGCATACCTACTCTGATACGGAAGAAAGCTCGCCAGCAGGGTCTCCAGTGAAATCTACACAACAGAGAAACAAGTTCACATGTTTCTCATCAGGAAGTGAATTCCCAAAGTCTGTCAAAACATATGGAGGGGAGTCACCTACATCTTCTTCATCATCATCTTCTTTAGCATCCACTTTCTTTTCAAAGTCACGGGAGTAG___CTTATGTAAGCACTTTCATGTGCCAGAAGAAGTCACTAAATGGATAAGCAAGGAATTGGGAAAATTACAGCCCGTTTTGCGAGCAAAGAGCATAAATGTCACTTTAATTCATTCTAGCATGGCTTGTGATGTGGCTATTGAGCGGCAATAGCCTTGCAATTAGAATGCCTGTTACCAGGAACTTCAAAATTGTTACATTCAGTTTTGTATATTTACATCTTTGGAATATAGCCTTCGTTTATATTGAAAACTTGTGGCCATTAATATACTGCTAACTAAACTTGATTTGTAGTTGTAGTTAGTTTGGAAGTTTAATCGAGTACTTGTGAAGAAAGAGTGAAGATTCAGC

Fln Alignment:

sp_v1.1_unigene474___QESNNSLQFPLPNGNFRIIRKLNSIQVEKTALESELKTHVHRYADLEQAFMQLKTQKDSLESILAKTREKLEHTQGQLTESEQMVANLQVQLASAQESKRSLKYELGTMASHKSDIDKELVR--LETKNTNLETALAATKEKLEQMQDQLTESEEMVKNLEEQLASAQESKQLSEYELGAMALRKSDIESQLKDRENE-MKKLCEKVDALESELQAERMRCQDAMSKYKALEEQLQ
B8LQX7_____________REKLESLCRELQRQNKMLTDECKKVSTEGQQKRLDLSTKFHDA--IKDASTKLGEQRDENEMLRQKLKQFSEQYELREQQFKQQLKKKTLELQLA-EVKLQQQLEVSCQEQAKVQLYTEQISQLLETEK-NLRLQLAADGEKFQQFQETLTKSNEVFESFKK--------------EMEKMAKTIKDL-----NRENSFLKKKCEKTDVSLIELVDEREKVKKQLEKTKNQKEKLE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1152	88		11		0.923564
1173		12		87	0.992554
1174		12		87	0.992554
1175		12		87	0.992554
1489		12		87	0.992554
1512			12	87	0.992554
1513	12	87			0.992554
1516			87	12	0.992554
1518	12			87	0.992554
1520	12			87	0.992554
1521			12	87	0.992554
1523	87	12			0.992554
1525	12			87	0.992554
1526			12	87	0.992554
1530		12		87	0.992554
1531	87		12		0.992554
1579	85	14			0.993533
1580		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain